BAC Information

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BAC

Clone NameB6Ng01-167L22
Chromosome3 (Build37)10 (Build37)
Map Location 45,776,392 - 45,777,568104,054,435 - 104,054,646
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167L22.bB6Ng01-167L22.g
ACCDH959159DH959160
length1,171331
definitionDH959159|Mus musculus domesticus DNA, BAC clone: B6Ng01-167L22, 5' end.DH959160|Mus musculus domesticus DNA, BAC clone: B6Ng01-167L22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,776,392 - 45,777,568)(104,054,435 - 104,054,646)
sequence
gaattctttgagaaggattagaggaatgtgtccaggttggaagaggggca
tctatggccttggactatgccaatctccctctttccttccttccctctct
ccctccttccctctctccctccttcccttgctacctgcttctccccctct
ctcttattctgcatccttccctctctctccctccttcctttcctctgtct
ccattttccctctctccgtccctcccaccttccttccctcctcccctccc
tccttctctatctcactctgtctaattccctccctctctctccatcttct
ctccttccctcctcctatatccttctctctcagatacctgtaaaaacctt
ttacctattgtccattacatgtctgcttcccaccatgatctaatgattta
gtccaccatcctagaataaatctctaaaactgtaagcaggcccccaaata
atttcttctataagagttgccttggtcattgtttctcttcaaagacagta
gctaagataggtattcatgggtattcacagttgttagccagatttagcaa
atatacctcaatacatcaaagctgcattgccatcacttcaagcatacaga
gatgtgtgatgctgtagtcatcagtaccaacttctcttgaaattcagcac
tgtgaagaacataacaaacatggaataacttctgaggagccatgaagctg
agaccaccagtgtgtttcatattcacttatttgtcaagagatcatttcta
tctctaatattagtattattaatttattgtttgtaaattgtcaaatcata
cttataaatgtcaaagcataatgaagaaaatatatgaaaaattataagtg
gctcattaaagcaggctatttaatacatttctattagtcctcagtattga
cagacaggcagaaatgacaataaagaggattatgtttcataattagcaat
aaaatgaacaaacacaataatttttattatataccagaagatatagttct
agaaatgatgagtcctaccattaaaacgtgctgtaagatgattcaaacta
cttttgtgactaaaaattaggaccagataaactatgattagacctgttac
aatggagagttaagtacgtatttttccaaaccagaaacttcaaaggtccg
aatgataaggaaaagaaactc
gaattccacataaaaccagtgacagtgaaacttatagaggagaaagtgga
gaaacacctcgaagatatgggtacaggggaaaaattcctgaatagaacag
caatggcttgtgctgtaagatcgagaattgacaaatgggacctcataaaa
ttgcaaaaacttctgtaaggcatgggacaccatcaataaaaattaaaaaa
aaaggacaccaatagcctggggatgaatctttacctattctaaatcagat
aggggactaatatctaatatatatatatatatatatatatatatatatat
atatgtatatgtatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45776392_45777568
seq2: B6Ng01-167L22.b_45_1215 (reverse)

seq1  GAGTTTCTTTTCCTTTATCTATCTGAACTTTTACAGTTTTCTGTTTTGAA  50
      ||||||||||||| |||||  || || |||| | |||||   |||| |||
seq2  GAGTTTCTTTTCC-TTATCATTCGGACCTTTGA-AGTTTCTGGTTTGGAA  48

seq1  AAATAGGTACTTTAATTCT-CATTGTAACA-GTCTAATCATAGTTTTATC  98
      ||||| |||| |||| ||| |||||||||| |||||||||||| ||||||
seq2  AAATACGTAC-TTAACTCTCCATTGTAACAGGTCTAATCATAG-TTTATC  96

seq1  TGGTTCTATTTTTTGGTCAC-AAAGAAGTTTGAAATCATTTTACAGCAC-  146
      |||| ||| ||||| ||||| |||| |||||| |||||| ||||||||| 
seq2  TGGTCCTAATTTTTAGTCACAAAAGTAGTTTG-AATCATCTTACAGCACG  145

seq1  TTTTAATGGTAGGACTCATTCATTTCTAGAACTATATTCCTTCTGGTATA  196
      |||||||||||||||||| ||||||||||||||||||  |||||||||||
seq2  TTTTAATGGTAGGACTCA-TCATTTCTAGAACTATAT--CTTCTGGTATA  192

seq1  TAATAAAAATTATTGTGTTTGTTCATTTTTATTGCTAATTATGAAACATA  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAATAAAAATTATTGTGTTTGTTCA-TTTTATTGCTAATTATGAAACATA  241

seq1  ATCCTCTTTATTGTCATTTTCTGCCTGTCTGTCAATACTGAGGACTAATA  296
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCCTCTTTATTGTCA-TTTCTGCCTGTCTGTCAATACTGAGGACTAATA  290

seq1  GAAATGTAATAAATAGCCTGCTTTAATGAGCCACTTATAATTTTTCATAT  346
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATTAAATAGCCTGCTTTAATGAGCCACTTATAATTTTTCATAT  340

seq1  ATTTTCTTCATTATGCTTTGACATTTATAAGTATGATTTGACAATTTACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCATTATGCTTTGACATTTATAAGTATGATTTGACAATTTACA  390

seq1  AACAATAAATTAATAATACTAATATTAGAGATAGAAATGATCTCTTGACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAATTAATAATACTAATATTAGAGATAGAAATGATCTCTTGACA  440

seq1  AATAAGTGAATATGAAACACACTGGTGGTCTCAGCTTCATGGCTCCTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGAATATGAAACACACTGGTGGTCTCAGCTTCATGGCTCCTCAG  490

seq1  AAGTTATTCCATGTTTGTTATGTTCTTCACAGTGCTGAATTTCAAGAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTCCATGTTTGTTATGTTCTTCACAGTGCTGAATTTCAAGAGAA  540

seq1  GTTGGTACTGATGACTACAGCATCACACATCTCTGTATGCTTGAAGTGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTACTGATGACTACAGCATCACACATCTCTGTATGCTTGAAGTGAT  590

seq1  GGCAATGCAGCTTTGATGTATTGAGGTATATTTGCTAAATCTGGCTAACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCAGCTTTGATGTATTGAGGTATATTTGCTAAATCTGGCTAACA  640

seq1  ACTGTGAATACCCATGAATACCTATCTTAGCTACTGTCTTTGAAGAGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAATACCCATGAATACCTATCTTAGCTACTGTCTTTGAAGAGAAA  690

seq1  CAATGACCAAGGCAACTCTTATAGAAGAAATTATTTGGGGGCCTGCTTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACCAAGGCAACTCTTATAGAAGAAATTATTTGGGGGCCTGCTTAC  740

seq1  AGTTTTAGAGATTTATTCTAGGATGGTGGACTAAATCATTAGATCATGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGAGATTTATTCTAGGATGGTGGACTAAATCATTAGATCATGGT  790

seq1  GGGAAGCAGACATGTAATGGACAATAGGTAAAAGGTTTTTACAGGTATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAGACATGTAATGGACAATAGGTAAAAGGTTTTTACAGGTATCT  840

seq1  GAGAGAGAAGGATATAGGAGGAGGGAAGGAGAGAAGATGGAGAGAGAGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAGGATATAGGAGGAGGGAAGGAGAGAAGATGGAGAGAGAGGG  890

seq1  AGGGAATTAGACAGAGTGAGATAGAGAAGGAGGGAGGGGAGGAGGGAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTAGACAGAGTGAGATAGAGAAGGAGGGAGGGGAGGAGGGAAGG  940

seq1  AAGGTGGGAGGGACGGAGAGAGGGAAAATGGAGACAGAGGAAAGGAAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGAGGGACGGAGAGAGGGAAAATGGAGACAGAGGAAAGGAAGGA  990

seq1  GGGAGAGAGAGGGAAGGATGCAGAATAAGAGAGAGGGGGAGAAGCAGGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGAGGGAAGGATGCAGAATAAGAGAGAGGGGGAGAAGCAGGTA  1040

seq1  GCAAGGGAAGGAGGGAGAGAGGGAAGGAGGGAGAGAGGGAAGGAAGGAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGAAGGAGGGAGAGAGGGAAGGAGGGAGAGAGGGAAGGAAGGAAA  1090

seq1  GAGGGAGATTGGCATAGTCCAAGGCCATAGATGCCCCTCTTCCAACCTGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGATTGGCATAGTCCAAGGCCATAGATGCCCCTCTTCCAACCTGG  1140

seq1  ACACATTCCTCTAATCCTTCTCAAAGAATTC  1177
      |||||||||||||||||||||||||||||||
seq2  ACACATTCCTCTAATCCTTCTCAAAGAATTC  1171

seq1: chr10_104054435_104054646
seq2: B6Ng01-167L22.g_122_338 (reverse)

seq1  TATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAGGTAAAGATC  50
        ||||| || |||||||||||||||||||| |||| |||||||||||| 
seq2  --TATATATTAGATATTAGTCCCCTATCTGATTTAGAATAGGTAAAGATT  48

seq1  CTTTCTCAATCTGTTGGTGGTCTTTTT------GTCTTATTGACGGTGTC  94
      | | | ||  || ||||||  ||||||       | ||||||| ||||||
seq2  CATCCCCAGGCTATTGGTGTCCTTTTTTTTTAATTTTTATTGATGGTGTC  98

seq1  TTTTGCCTTGCAGAAG-CTTTGCAATTTTATGAGGTCCCATTTATCAACT  143
         |||||| ||||||  ||||||||||||||||||||||||| |||| |
seq2  CCATGCCTTACAGAAGTTTTTGCAATTTTATGAGGTCCCATTTGTCAATT  148

seq1  CTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCC  193
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCC  198

seq1  TGTACCCATATCTTCGAGG  212
      |||||||||||||||||||
seq2  TGTACCCATATCTTCGAGG  217