BAC Information

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BAC

Clone NameB6Ng01-168E10
Chromosome10 (Build37)
Map Location 31,195,428 - 31,358,035
singlet/doubletdoublet
Overlap geneIbrdc1, LOC666055
Upstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294
Downstream geneLOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E10.bB6Ng01-168E10.g
ACCDH959555DH959556
length1,2211,137
definitionDH959555|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E10, 5' end.DH959556|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,356,420 - 31,358,035)(31,195,428 - 31,196,567)
sequence
gaattccaaggcagccagcgctacacaatgtctcagatagacaaacaaca
aaacgaaacttaaaactaaaactaccatacaggttaaaaagaaagaattt
atttgaccaaagagaataaaataaaaatgcagagatagtctacgtaagac
atgcccttgtctctgctatactggacattagccttaagaaagcaggaatc
acaggtatggaaaacactagaaacattgtccgctaagaaccaagagctct
agatttagatagtaacatggtaatgtaatagacttgataatagaatatat
tattttccatcaactaagcaaacatttcaaagagaatatagtatgttctg
ttctgccttgcaacacaaacatacttattcagtgctccataaagattctc
cttacagtactatccccaaagagttccaatgcctattttctgctttagct
ccattactacgaatgtgtgagtgggtttgccatttatgtgttgaattctc
atttctttagtattgtttttaatttaatgcctaaagctaaagctaaaccc
aagtttgaatcctatcccagataggatttgttgtaaccatggtccatgag
aaaagagtgtataaagagaagactcatcttaccagagttgaacagatttt
gtaggccatggcagagaggccagaggaggatgcctactgtcctgatctgt
cacaactctgtgatgttctctcaagatcaggtctctcactgaacttaaag
cttgtggtttccctagaagcttcgttcccagccaaccctggtacttcttt
tactcccaagtcccaaatccctggtttggtgcagggtcctcgtatttgcg
caacaattctttttgccgacactgagccaactccacagccccaatttttt
tttaagattataattttattctatttggtctacctggattatcttgccac
aaccaaaagtaattcaaccatacctaagttttagacagcagaaaatttct
tactcaacagcaccttgacttctttgtctaccaagtgagatagaaaagac
atttcccctatgaatgttatagaatatctaggatgtaaaaattcaagttt
gctttgtatattacctctttttcttaactgaccttcattccatttcatgt
tatgcaatgagatagctgaggctaagatagctagagaacagagaatattt
gttagggtttgagcctgaagc
gaattctgcagaagaagaagggaaaagagtctcagaatgagggggaatgg
atgatgctagggaacagtgtcctccagatacaccagcgaagatgagcctt
cagccatcactatttctctatgccctttggttctgtacccattgaattcc
tactgtgtaggtggtataaagcacctacatacttgaactttgggggctgg
agagatggatcaatggttaagagccctggctcttccagaggacctggatt
caattcccagcacccacgtggcagctcacaactgtctgtaacttttcaat
tccaggggatgcaacactctcataccagtgcacatgaaatagattgtctt
tgaagcacctgactatgcagagtttcagtagaactctacagatccttaga
ggtctgcttattttgcccccatcttcatttttttcctctttctgtttttt
tcattttttttccaagtgtgaagttagaggcagtttccaccattgcccaa
ctcaggcaatgtgttctattaatcagtcttgaagtgccaagtctcacact
tttatctctgctgtaatattgagtccatcccataaaaatatttctgctat
tgcattttttcagttttcaaacctgtatttgactcattttaaacagaggt
ttctagttcctactgagatgtcctcctttgtttcttccttttccaactct
cattctctgctttctacaattgtaaaggtggagaagcagtccaagtgcta
ctgggattttagcaactctgccatcttgcttgcacctctggcaaagcacc
cagtgggtaaacccaagtgggcttcttctccactttgattggcctggttt
tgctctttgcccctttcaggcagctgtctattgttttgatgcagtcagtg
gtggctggaatgtgcatagggatgcttgagggatgctgctcccctcatgc
tgagccttctatgcctctgtgcatctgtcaatgttcagactggtttataa
acagatttttacattaaaggatttacaccattatgcagggatctgggact
ttttactacgaaaaagacctttattcccaatcaatgcctcactctgaggg
tttagtacatataccaatgacagtgctagaggctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31356420_31358035
seq2: B6Ng01-168E10.b_45_1265 (reverse)

seq1  GCTTCATGCTCAAACCCCAAAGTAACCTGAAAGACTGGACTAATACTGAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGTGGGATGGGTTAATTTTCACAGGAGAGGGATCTGGATAAAATGCTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AACTGAGCCACATCTTTAATCCCAAAACTTGGGAGGCAAACGAAGGCAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCAGTGAGTTCAAGGCCAGCCTGTTCTACTGAGCAAGTTATAGGACAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGGGCTACACAACAGAGAGACCCTGTTTCAAACAACAAGAACAACAAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  AACAACAATAAAAACAAATGAATTGAACCTCATGATTCCCTCCCTCCTTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTATGTAATTGCTTGTCATGTTGTCTTCCATTGTGGGATAATGTAACAGG  350
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGCTTTCAGCAGACATAGGCTCTGTATATTTGGCTTTCTAGCTTCA--  398
                                                ||||||  
seq2  ------------------------------------------GCTTCAGG  8

seq1  --TAAACCATAACAAATAATTCTCTGTTCTCTATAGACTA-CTTAGCCTC  445
         ||||| |||||||| |||||||||||||||    ||| |||||||||
seq2  CTCAAACCCTAACAAAT-ATTCTCTGTTCTCTA---GCTATCTTAGCCTC  54

seq1  AGCTATTCTATTGCAATAACATGACAATGAATGAA-GTCAGTTAAGAAAA  494
      ||||||   ||||| ||||||||| |  ||||||| ||||||||||||||
seq2  AGCTATCTCATTGC-ATAACATGAAATGGAATGAAGGTCAGTTAAGAAAA  103

seq1  AGA-GTAATATACAAAAGCAAACTTGAATATTTACATCCTAGATA-TCTA  542
      ||| ||||||||| ||||||||||||||| ||||||||||||||| ||||
seq2  AGAGGTAATATAC-AAAGCAAACTTGAATTTTTACATCCTAGATATTCTA  152

seq1  TAACATTCATAGGGGGAAATGTCTTTTCTATCTCACTTGGTAGACAAAGA  592
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCATA-GGGGAAATGTCTTTTCTATCTCACTTGGTAGACAAAGA  201

seq1  AGTCAAGGTGCTGTTGAGTAAGAAATTTTCTTGCTGTTCTAAAAACTTAG  642
      |||||||||||||||||||||||||||||| ||||| ||| |||||||||
seq2  AGTCAAGGTGCTGTTGAGTAAGAAATTTTC-TGCTG-TCT-AAAACTTAG  248

seq1  GTATGGTTGAATTACTTTTGGTTTGTGGCAAGATAATCCAGGTAGACCAA  692
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTATGGTTGAATTACTTTTGG-TTGTGGCAAGATAATCCAGGTAGACCAA  297

seq1  ATAGAATAAAATTATAATCTTAAAAAAAAATTGGGGCTGTGGAGTTGGCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAAAATTATAATCTTAAAAAAAAATTGGGGCTGTGGAGTTGGCT  347

seq1  CAGTGTCGGCAAAAAGAATTGTTGCGCAAATACGAGGACCCTGCACCAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCGGCAAAAAGAATTGTTGCGCAAATACGAGGACCCTGCACCAAA  397

seq1  CCAGGGATTTGGGACTTGGGAGTAAAAGAAGTACCAGGGTTGGCTGGGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATTTGGGACTTGGGAGTAAAAGAAGTACCAGGGTTGGCTGGGAA  447

seq1  CGAAGCTTCTAGGGAAACCACAAGCTTTAAGTTCAGTGAGAGACCTGATC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCTTCTAGGGAAACCACAAGCTTTAAGTTCAGTGAGAGACCTGATC  497

seq1  TTGAGAGAACATCACAGAGTTGTGACAGATCAGGACAGTAGGCATCCTCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAACATCACAGAGTTGTGACAGATCAGGACAGTAGGCATCCTCC  547

seq1  TCTGGCCTCTCTGCCATGGCCTACAAAATCTGTTCAACTCTGGTAAGATG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTCTCTGCCATGGCCTACAAAATCTGTTCAACTCTGGTAAGATG  597

seq1  AGTCTTCTCTTTATACACTCTTTTCTCATGGACCATGGTTACAACAAATC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTCTTTATACACTCTTTTCTCATGGACCATGGTTACAACAAATC  647

seq1  CTATCTGGGATAGGATTCAAACTTGGGTTTAGCTTTAGCTTTAGGCATTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGGGATAGGATTCAAACTTGGGTTTAGCTTTAGCTTTAGGCATTA  697

seq1  AATTAAAAACAATACTAAAGAAATGAGAATTCAACACATAAATGGCAAAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAACAATACTAAAGAAATGAGAATTCAACACATAAATGGCAAAC  747

seq1  CCACTCACACATTCGTAGTAATGGAGCTAAAGCAGAAAATAGGCATTGGA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACACATTCGTAGTAATGGAGCTAAAGCAGAAAATAGGCATTGGA  797

seq1  ACTCTTTGGGGATAGTACTGTAAGGAGAATCTTTATGGAGCACTGAATAA  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGGGGATAGTACTGTAAGGAGAATCTTTATGGAGCACTGAATAA  847

seq1  GTATGTTTGTGTTGCAAGGCAGAACAGAACATACTATATTCTCTTTGAAA  1292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTGTGTTGCAAGGCAGAACAGAACATACTATATTCTCTTTGAAA  897

seq1  TGTTTGCTTAGTTGATGGAAAATAATATATTCTATTATCAAGTCTATTAC  1342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTAGTTGATGGAAAATAATATATTCTATTATCAAGTCTATTAC  947

seq1  ATTACCATGTTACTATCTAAATCTAGAGCTCTTGGTTCTTAGCGGACAAT  1392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCATGTTACTATCTAAATCTAGAGCTCTTGGTTCTTAGCGGACAAT  997

seq1  GTTTCTAGTGTTTTCCATACCTGTGATTCCTGCTTTCTTAAGGCTAATGT  1442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGTGTTTTCCATACCTGTGATTCCTGCTTTCTTAAGGCTAATGT  1047

seq1  CCAGTATAGCAGAGACAAGGGCATGTCTTACGTAGACTATCTCTGCATTT  1492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATAGCAGAGACAAGGGCATGTCTTACGTAGACTATCTCTGCATTT  1097

seq1  TTATTTTATTCTCTTTGGTCAAATAAATTCTTTCTTTTTAACCTGTATGG  1542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTCTCTTTGGTCAAATAAATTCTTTCTTTTTAACCTGTATGG  1147

seq1  TAGTTTTAGTTTTAAGTTTCGTTTTGTTGTTTGTCTATCTGAGACATTGT  1592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAGTTTTAAGTTTCGTTTTGTTGTTTGTCTATCTGAGACATTGT  1197

seq1  GTAGCGCTGGCTGCCTTGGAATTC  1616
      ||||||||||||||||||||||||
seq2  GTAGCGCTGGCTGCCTTGGAATTC  1221

seq1: chr10_31195428_31196567
seq2: B6Ng01-168E10.g_67_1203

seq1  GAATTCTGCAGAAGAAGAAGGGAAAAGAGTCTCAGAATGAGGGGGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGAAGAAGAAGGGAAAAGAGTCTCAGAATGAGGGGGAATGG  50

seq1  ATGATGCTAGGGAACAGTGTCCTCCAGATACACCAGCGAAGATGAGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTAGGGAACAGTGTCCTCCAGATACACCAGCGAAGATGAGCCTT  100

seq1  CAGCCATCACTATTTCTCTATGCCCTTTGGTTCTGTACCCATTGAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCACTATTTCTCTATGCCCTTTGGTTCTGTACCCATTGAATTCC  150

seq1  TACTGTGTAGGTGGTATAAAGCACCTACATACTTGAACTTTGGGGGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTAGGTGGTATAAAGCACCTACATACTTGAACTTTGGGGGCTGG  200

seq1  AGAGATGGATCAATGGTTAAGAGCCCTGGCTCTTCCAGAGGACCTGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGATCAATGGTTAAGAGCCCTGGCTCTTCCAGAGGACCTGGATT  250

seq1  CAATTCCCAGCACCCACGTGGCAGCTCACAACTGTCTGTAACTTTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCAGCACCCACGTGGCAGCTCACAACTGTCTGTAACTTTTCAAT  300

seq1  TCCAGGGGATGCAACACTCTCATACCAGTGCACATGAAATAGATTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGATGCAACACTCTCATACCAGTGCACATGAAATAGATTGTCTT  350

seq1  TGAAGCACCTGACTATGCAGAGTTTCAGTAGAACTCTACAGATCCTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACCTGACTATGCAGAGTTTCAGTAGAACTCTACAGATCCTTAGA  400

seq1  GGTCTGCTTATTTTGCCCCCATCTTCATTTTTTTCCTCTTTCTGTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTTATTTTGCCCCCATCTTCATTTTTTTCCTCTTTCTGTTTTTT  450

seq1  TCATTTTTTTTCCAAGTGTGAAGTTAGAGGCAGTTTCCACCATTGCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTTCCAAGTGTGAAGTTAGAGGCAGTTTCCACCATTGCCCAA  500

seq1  CTCAGGCAATGTGTTCTATTAATCAGTCTTGAAGTGCCAAGTCTCACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAATGTGTTCTATTAATCAGTCTTGAAGTGCCAAGTCTCACACT  550

seq1  TTTATCTCTGCTGTAATATTGAGTCCATCCCATAAAAATATTTCTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCTGCTGTAATATTGAGTCCATCCCATAAAAATATTTCTGCTAT  600

seq1  TGCATTTTTTCAGTTTTCAAACCTGTATTTGACTCATTTTAAACAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTTTCAGTTTTCAAACCTGTATTTGACTCATTTTAAACAGAGGT  650

seq1  TTCTAGTTCCTACTGAGATGTCCTCCTTTGTTTCTTCCTTTTCCAACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCCTACTGAGATGTCCTCCTTTGTTTCTTCCTTTTCCAACTCT  700

seq1  CATTCTCTGCTTTCTACAATTGTAAAGGTGGAGAAGCAGTCCAAGTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTGCTTTCTACAATTGTAAAGGTGGAGAAGCAGTCCAAGTGCTA  750

seq1  CTGGGATTTTAGCAACTCTGCCATCTTGCTTGCACCTCTGGCAAAGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTTAGCAACTCTGCCATCTTGCTTGCACCTCTGGCAAAGCACC  800

seq1  CAGT-GGTTAACCCAAGTGGGCTTCTTCTCCACTTTGATTGGCCTGGTTT  849
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTAAACCCAAGTGGGCTTCTTCTCCACTTTGATTGGCCTGGTTT  850

seq1  TGCTCTTTGCCCCTTTCAGGCAGCTGTCTATTGTTTTGATGCAGTCAGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTGCCCCTTTCAGGCAGCTGTCTATTGTTTTGATGCAGTCAGTG  900

seq1  GTGGCTGGAATGTGCTATAGGGATGCTTGAGGGATGCTGCATCCCCTCAT  949
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  GTGGCTGGAATGTGC-ATAGGGATGCTTGAGGGATGCTGC-TCCCCTCAT  948

seq1  GCTGAGCCTTCTATG-CTCTGTGCATCTGTCAAATGTTCAGACTGGTTTA  998
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  GCTGAGCCTTCTATGCCTCTGTGCATCTGTC-AATGTTCAGACTGGTTTA  997

seq1  ATAAAACAGA-TTTTACA-TAAAGGATTTACAACTATTATGCAGGGATCT  1046
         ||||||| ||||||| |||||||||||| || |||||||||||||||
seq2  --TAAACAGATTTTTACATTAAAGGATTTAC-ACCATTATGCAGGGATCT  1044

seq1  -GGAC-TTTTACTACAAAAAAGA-CTTTATCTCCAAATCCAAATGCAGCA  1093
       |||| ||||||||| ||||||| |||||| ||| ||||  |||||  ||
seq2  GGGACTTTTTACTACGAAAAAGACCTTTAT-TCCCAATC--AATGCCTCA  1091

seq1  CCTGGAGGGTTTAGTACATAGACCTATGACAGTGCTAGGAGGCTGAG  1140
      |   |||||||||||||||| ||| |||||||||||| |||||||||
seq2  CTCTGAGGGTTTAGTACATATACCAATGACAGTGCTA-GAGGCTGAG  1137