BAC Information

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BAC

Clone NameB6Ng01-168I10
Chromosome10 (Build37)
Map Location 13,980,702 - 14,108,291
singlet/doubletdoublet
Overlap genenone
Upstream genePhactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168I10.bB6Ng01-168I10.g
ACCDH959741DH959742
length1,1491,169
definitionDH959741|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I10, 5' end.DH959742|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,980,702 - 13,981,883)(14,107,120 - 14,108,291)
sequence
gaattctttgtgccaaagaatcttttgcttactccttgcagacactgtac
atttggaatttgcttgttcacattttaaaaagcatactatttaattttat
ttcatgtgcatcagtgtgagggcatcagatcctctggaactggagttaca
gacagttgtgagttgccatgtgagtgctaggaattgaacctgggtccttt
ggaagaacagacagtgcaactaaccaccaagttatctctccagtgccctg
tttactttgctaatgatgtctttcaaagagaagcttttaagctcatgagc
tacaatgcattgagtttatgtttttatgtttactgtttttgtgttccact
taagagctgtttaactcttaagtgaggttcttcactaaaactttttccta
aagttttgcagtttaagtacatttttcaatttaaatctgaaatgtcttca
taaactatacttttaaatgtctctcccttagctggtgaagctgtttgtta
aggctatggcatctttagaaagtggggcctacctggcagaaggcatgcaa
gctgagcctcttatgcgggccttggttccacccttaatctctgctgcttg
ttccactgtgttgtgaccagctactgccactcacacccctgcacccctca
tgagcagagtcactcagctgtaccttccacatgatgaactgaaaccctct
gaagtcatgagcagaaatcaatttatcctcccaaaaattatctgtcatag
tgacgcagagctaatcagtacagtaagtcttcagtaatttagcaccaata
tctgtatgatatgacagaagaatataggcaaattaccgttcttgaaattc
ctgcccctcttggtaaatgtagtgtactttcctctgtttatgttaatatc
tttctcttcaaatagttgacatgcatgaagaagtctgtgtttacatttct
tttcagtatatgtcaattcttgtgtgatctgctttattgaactccttgct
tgtcatagtcggtgtattttatgctgatttggatagtttgatatatgtct
gaatgagcaatgtactctctaatctattattcttcgaaattgttttgaag
ctttgtaagtcttcaccattttgactcttctaagagaactgtcccgaaa
gaattctgcctcaggctcttcatctgtctcctttacaaaacaatgaaaaa
tgtaagtagactgtttcctgaattctgagaactcacagcaaattaatgaa
cacaaggaaggggtcatagaaccctcatttatatctagttggacaggggg
gcagcaagagaattgaaacttgcacttggcacgagagattgggagagtgt
taagggatcaagatcatgatgaagttgaaccatgggtcaccacgttggta
tctacagaggactggaattccttggtgaggaaatcctgtgttttgttggt
caaaagtatcagcccattgtcatataaaacaaaataggttttacttttat
agtctctgtctatttatcatttgcacagaaaaaaatataaccttgaataa
aaaactaagataaatgtgatcggatgcttatacttaggaatcagagttaa
agtcccacagaaaacctggatgttattcttataacttgtatataaaattt
aaattatttaaatgatcaggttagcatattgagaatatagatttggcata
gacactgcaaaatacaataatttagtgctcaaatttgaacattatttcat
ggcaaagagtgggtgaataacatttactttgcatgattaagaacccttaa
aatcttagaatggatcaatgcatattaaaatactcaaaaggataaattgg
tctttgatgcacacacaaagagaaacaaaacgcattaacaatatttaccc
ttgagctttcttcttcctgatagcattaattctcttatttcgatgtttct
ttttgtgattctataattagtaattactagtttcaatatttagtccttgg
gtttctccttttccccagtcacaggaaagaaaaagagaatgaggagagag
gccagaaagacagaaaacaagaagaagagaaagggagaggaggagattgg
ggagagcctcagagagagagaactaaaagggctgagatttggtatgcagc
tgttgactgaaggcagcaggaaagttcctgggcttgtacagtatcaacta
atggccctcaggcctgttatcacccagctgtctaaaaggcaaatcactgg
ttctgctctcatgactttctaattaagggtcactgacctctgagggcaac
taatcgaaccagaagccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13980702_13981883
seq2: B6Ng01-168I10.b_44_1192

seq1  GAATTCTTTGTGCCAAAGAATCTTTTGCTTACTCCTTGCAGACACTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGCCAAAGAATCTTTTGCTTACTCCTTGCAGACACTGTAC  50

seq1  ATTTGGAATTTGCTTGTTCACATTTTAAAAAGCATACTATTTAATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAATTTGCTTGTTCACATTTTAAAAAGCATACTATTTAATTTTAT  100

seq1  TTCATGTGCATCAGTGTGAGGGCATCAGATCCTCTGGAACTGGAGTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGCATCAGTGTGAGGGCATCAGATCCTCTGGAACTGGAGTTACA  150

seq1  GACAGTTGTGAGTTGCCATGTGAGTGCTAGGAATTGAACCTGGGTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGTGAGTTGCCATGTGAGTGCTAGGAATTGAACCTGGGTCCTTT  200

seq1  GGAAGAACAGACAGTGCAACTAACCACCAAGTTATCTCTCCAGTGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACAGACAGTGCAACTAACCACCAAGTTATCTCTCCAGTGCCCTG  250

seq1  TTTACTTTGCTAATGATGTCTTTCAAAGAGAAGCTTTTAAGCTCATGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGCTAATGATGTCTTTCAAAGAGAAGCTTTTAAGCTCATGAGC  300

seq1  TACAATGCATTGAGTTTATGTTTTTATGTTTACTGTTTTTGTGTTCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGCATTGAGTTTATGTTTTTATGTTTACTGTTTTTGTGTTCCACT  350

seq1  TAAGAGCTGTTTAACTCTTAAGTGAGGTTCTTCACTAAAACTTTTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTGTTTAACTCTTAAGTGAGGTTCTTCACTAAAACTTTTTCCTA  400

seq1  AAGTTTTGCAGTTTAAGTACATTTTTCAATTTAAATCTGAAATGTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGCAGTTTAAGTACATTTTTCAATTTAAATCTGAAATGTCTTCA  450

seq1  TAAACTATACTTTTAAATGTCTCTCCCTTAGCTGGTGAAGCTGTTTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATACTTTTAAATGTCTCTCCCTTAGCTGGTGAAGCTGTTTGTTA  500

seq1  AGGCTATGGCATCTTTAGAAAGTGGGGCCTACCTGGCAGAAGGCATGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGGCATCTTTAGAAAGTGGGGCCTACCTGGCAGAAGGCATGCAA  550

seq1  GCTGAGCCTCTTATGCGGGCCTTGGTTCCACCCTTAATCTCTGCTGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCTCTTATGCGGGCCTTGGTTCCACCCTTAATCTCTGCTGCTTG  600

seq1  TTCCACTGTGTTGTGACCAGCTACTGCCACTCACACCCCTGCACCCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGTGTTGTGACCAGCTACTGCCACTCACACCCCTGCACCCCTCA  650

seq1  TGAGCAGAGTCACTCAGCTGTACCTTCCACATGATGAACTGAAACCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAGTCACTCAGCTGTACCTTCCACATGATGAACTGAAACCCTCT  700

seq1  GAAGTCATGAGCAGAAATCAATTTATCCTCCCAAAAATTATCTGTCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATGAGCAGAAATCAATTTATCCTCCCAAAAATTATCTGTCATAG  750

seq1  TGACGCAGAGCTAATCAGTACAGTAAGTCTTCAGTAATTTAGCACCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCAGAGCTAATCAGTACAGTAAGTCTTCAGTAATTTAGCACCAATA  800

seq1  TCTGTATGATATGACAGAAGAATATAGGCAAATTACCGTTCTTGAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGATATGACAGAAGAATATAGGCAAATTACCGTTCTTGAAATTC  850

seq1  CTGCCCCTCTTGGTAAATGTAGTGTACTTTCCTCTGTTTATGTTAATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTCTTGGTAAATGTAGTGTACTTTCCTCTGTTTATGTTAATATC  900

seq1  TTTCTCTTCAAAATAGTTGACATGCATGAAGAAGTCTGTGTTTACATTTC  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTC-AAATAGTTGACATGCATGAAGAAGTCTGTGTTTACATTTC  949

seq1  TTTTCAGTTATATGTCAATTCTTGTGTTGATTCTGCTTTATTGAACTCCT  1000
      ||||||| |||||||||||||||||| ||| |||||||||||||||||||
seq2  TTTTCAG-TATATGTCAATTCTTGTG-TGA-TCTGCTTTATTGAACTCCT  996

seq1  TGCTTGTTCATAGGTCGGTGTTATTTTATGCTGATTTGGATAGTTTTGAT  1050
      |||||| ||||| ||||||| |||||||||||||||||||||| ||||||
seq2  TGCTTG-TCATA-GTCGGTG-TATTTTATGCTGATTTGGATAG-TTTGAT  1042

seq1  ATTATGTCTTGAAATAGAGCAAAATGTACTCTCTAATCTAAATTATTCTT  1100
      | |||||| ||||   ||||  |||||||||||||||||  |||||||||
seq2  A-TATGTC-TGAA--TGAGC--AATGTACTCTCTAATCT--ATTATTCTT  1084

seq1  TCCAAAAATTGTTTTTGGACAGTCTTTGTAGGTCTACAAACCATTTTTAA  1150
           ||||||||||  || || ||||||| |||| |  ||||||||   
seq2  ---CGAAATTGTTTT--GA-AG-CTTTGTAAGTCTTC--ACCATTTT---  1122

seq1  AACTCTTCCTACAGAGAAACCCTGTCTCGAAA  1182
       |||||| ||| ||||||   ||||| |||||
seq2  GACTCTT-CTA-AGAGAA---CTGTCCCGAAA  1149

seq1: chr10_14107120_14108291
seq2: B6Ng01-168I10.g_66_1234 (reverse)

seq1  ATGGCTTTCTGTCTGATTAGTTGCCACCTCAGAGCTCAGTGACACTTTAA  50
      |||||||   ||  ||||||||||  |||||||| |||||||| | ||||
seq2  ATGGCTTCTGGTTCGATTAGTTGC--CCTCAGAGGTCAGTGAC-CCTTAA  47

seq1  TTAGAAAGTCTAGAGAGCAGAA-CAGTGATATTGCCTTTTAGACAGCTGG  99
      ||||||||||  |||||||||| ||||||| |||||||||||||||||||
seq2  TTAGAAAGTCATGAGAGCAGAACCAGTGAT-TTGCCTTTTAGACAGCTGG  96

seq1  GTGATAACAGGCCTGAGGGCCATTAGTTGATACTGTACAAGCCCAGGAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACAGGCCTGAGGGCCATTAGTTGATACTGTACAAGCCCAGGAAC  146

seq1  TTTCCTGCTGGCCTCAGTCAACAGCTTGCATACCAAATCTCAGCCCTTTT  199
      |||||||||| | |||||||||||| ||||||||||||||||||||||||
seq2  TTTCCTGCTGCCTTCAGTCAACAGC-TGCATACCAAATCTCAGCCCTTTT  195

seq1  AGTTCTCTCTCTCTGAGGCTCT-CCCAATCTCCTCCTCTTCCTTTCTCTT  248
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  AGTTCTCTCTCTCTGAGGCTCTCCCCAATCTCCTCCTCTCCCTTTCTCTT  245

seq1  CTTCTTGTTTTCTGTCTTTCTGGCCTCTCTCCTCATTCTCTTTTTCTTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTTTCTGTCTTTCTGGCCTCTCTCCTCATTCTCTTTTTCTTTC  295

seq1  CTGTGACTGGGGAAAAGGAGAAACCCAAGGACTAAATATTGAAACTAGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTGGGGAAAAGGAGAAACCCAAGGACTAAATATTGAAACTAGTA  345

seq1  ATTACTAATTATAGAATCACAAAAAGAAACATCGAAATAAGAGAATTAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAATTATAGAATCACAAAAAGAAACATCGAAATAAGAGAATTAAT  395

seq1  GCTATCAGGAAGAAGAAAGCTCAAGGGTAAATATTGTTAATGCGTTTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAGGAAGAAGAAAGCTCAAGGGTAAATATTGTTAATGCGTTTTGT  445

seq1  TTCTCTTTGTGTGTGCATCAAAGACCAATTTATCCTTTTGAGTATTTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGTGTGTGCATCAAAGACCAATTTATCCTTTTGAGTATTTTAA  495

seq1  TATGCATTGATCCATTCTAAGATTTTAAGGGTTCTTAATCATGCAAAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTGATCCATTCTAAGATTTTAAGGGTTCTTAATCATGCAAAGTA  545

seq1  AATGTTATTCACCCACTCTTTGCCATGAAATAATGTTCAAATTTGAGCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTCACCCACTCTTTGCCATGAAATAATGTTCAAATTTGAGCAC  595

seq1  TAAATTATTGTATTTTGCAGTGTCTATGCCAAATCTATATTCTCAATATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTGTATTTTGCAGTGTCTATGCCAAATCTATATTCTCAATATG  645

seq1  CTAACCTGATCATTTAAATAATTTAAATTTTATATACAAGTTATAAGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGATCATTTAAATAATTTAAATTTTATATACAAGTTATAAGAAT  695

seq1  AACATCCAGGTTTTCTGTGGGACTTTAACTCTGATTCCTAAGTATAAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAGGTTTTCTGTGGGACTTTAACTCTGATTCCTAAGTATAAGCA  745

seq1  TCCGATCACATTTATCTTAGTTTTTTATTCAAGGTTATATTTTTTTCTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCACATTTATCTTAGTTTTTTATTCAAGGTTATATTTTTTTCTGT  795

seq1  GCAAATGATAAATAGACAGAGACTATAAAAGTAAAACCTATTTTGTTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGATAAATAGACAGAGACTATAAAAGTAAAACCTATTTTGTTTTA  845

seq1  TATGACAATGGGCTGATACTTTTGACCAACAAAACACAGGATTTCCTCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAATGGGCTGATACTTTTGACCAACAAAACACAGGATTTCCTCAC  895

seq1  CAAGGAATTCCAGTCCTCTGTAGATACCAACGTGGTGACCCATGGTTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATTCCAGTCCTCTGTAGATACCAACGTGGTGACCCATGGTTCAA  945

seq1  CTTCATCATGATCTTGATCCCTTAACACTCTCCCAATCTCTCGTGCCAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCATGATCTTGATCCCTTAACACTCTCCCAATCTCTCGTGCCAAG  995

seq1  TGCAAGTTTCAATTCTCTTGCTGCCCCCCTGTCCAACTAGATATAAATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTTCAATTCTCTTGCTGCCCCCCTGTCCAACTAGATATAAATGA  1045

seq1  GGGTTCTATGACCCCTTCCTTGTGTTCATTAATTTGCTGTGAGTTCTCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTATGACCCCTTCCTTGTGTTCATTAATTTGCTGTGAGTTCTCAG  1095

seq1  AATTCAGGAAACAGTCTACTTACATTTTTCATTGTTTTGTAAAGGAGACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGAAACAGTCTACTTACATTTTTCATTGTTTTGTAAAGGAGACA  1145

seq1  GATGAAGAGCCTGAGGCAGAATTC  1172
      ||||||||||||||||||||||||
seq2  GATGAAGAGCCTGAGGCAGAATTC  1169