BAC Information

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BAC

Clone NameB6Ng01-168N23
Chromosome10 (Build37)
Map Location 111,566,059 - 111,668,159
singlet/doubletdoublet
Overlap geneGlipr1l3, Caps2
Upstream geneLOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895
Downstream geneKcnc2, LOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168N23.bB6Ng01-168N23.g
ACCDH959999DH960000
length1,1621,125
definitionDH959999|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N23, 5' end.DH960000|Mus musculus domesticus DNA, BAC clone: B6Ng01-168N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,566,059 - 111,567,261)(111,667,011 - 111,668,159)
sequence
gaattcaaaatatgtgttcatatatatatatacatacatacatatactta
tatatgtatacacacacatatacagtcatcattgaattcagtcctaagaa
attatattattcattttatgaaaaattgatgaccattgggtgctaagtga
caaactatttgatgtcccccattaaaaataaatctaatctatctatccat
ccattttcatctctctctctttctctttctctacatatgactttcaaaga
tggaaatttaactcacaaaccaaaaatttatcattgcagagcatataatt
tagtatgtataatattgttgtattatccctccgtgatcaaaatctaaaat
atttccaaccatgctctcaaagctactaaagaaacatacatattagcagt
ctccatcccgtaccccatcccatgtcaaccaatgatctatttacatctca
acagagagcctattttagacccgtctttccaatggagtaatacagtattt
gtttagctttaaaaatatggacacttgtctgccttttctcccataacact
gcattcaatagtcatattttatgtttctctaagaagaacagttttgaagt
gataacttgttacaattcagtaaaaacattaatgaaaaactgacaaataa
tgaatggggtaagaaacagtctcttatatcatcgggagtctgaaagaaac
catcagatccatgattccaaaaaggtgagaagcatagatagccaatgaag
aactgctgtaaacagcagcctgtaaggtaaagcacaaaaaaccactgtat
gcttgctttataatggagacaaaggctataactcatatcactagggagag
caaccaagaaggaatggggtcatcccttcttctcttgctctggggccaga
agcagaaggaaagtgaagtctgtctgtctgctgatctgtgggaatttggg
atgcaagtcactttcttaaagtctcattctctgtcagggactctgggtct
ttcagctctggctatataataagctgctatgacatactggagcatgtgtc
tatacatgtgagcatttctggcaataccaggagggtatagctgggtttca
gtagtaatatgtcatatctgagaacacaacctgacttcaggtggttacag
ctgcaatcatcc
gaattcttgcttgaaacaacaaccaaagctgtggttgcaggctgcttgct
ctggtgtggttgccttcagcatatcttcagacacagtgatttctaacagc
tttgctattcctgtatctttcttctgatccggtgattcgagaactacagg
aaaaggcaagatgcatcattgcaggtcctataaaatcatcttgatgcatg
gtgctttgaggtggagcctcctggagtcagagttcttgctgaggccaaaa
ccaggtaaccaacatgaagcagcctggctgctgggctgcgctttccacag
caggcctgcagaagctgagaacctttcctgtagaactggatgctgcagac
taaggaaaggaggagaaggggaaagagttatgatcagcacctgtcatctt
gggttcagtggctgaatttagcctgaatctggtctttggaatctgtggat
gtgtaccaatgcctgacctgcccctgttccatcttttatgggtcttgttt
attgttcatacatatgttcacacacccttcaggaagacgaaagctccaag
cagcttatgtctgttcacagaatggtgatgagtgtgcgcccatgtggtgg
gtgttgagctgtaatcaaacaatataaaatgccagtttagaaaaaataag
tttaagacattaatttgcaacgttctgaatgtacttgataatatatttta
attttgaaagattctgaagttgctcttccacaaaaaaaaatctatgtgaa
gtactacatgttaatcacctagatgtaaccattcctcaagatccatctgt
acatgtctatgtgcaagtttcctaacattatgtttcacatagtacatttg
tttaatattttgtttaatctttaatatattgttgattgtcagtgatttcg
tattgcctgttgaaagtgtgcacttcacacagaatgatctttacattgca
aagctattaaatctttagaaatggtaaagtataattcatcagagatttaa
acagaattgttctgatttctgcgagttaaatttctgactcaccacatatt
tcacatgccctgggaactattttctttatcagacaatggtgtattgtgaa
tgaatacattccatgggagcgagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111566059_111567261
seq2: B6Ng01-168N23.b_46_1207

seq1  GAATTCAAAATATGTGTTCATATATATATATACATACATACATATACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATATGTGTTCATATATATATATACATACATACATATACTTA  50

seq1  TATATGTATACACACACATATACAGTCATCATTGAATTCAGTCCTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATACACACACATATACAGTCATCATTGAATTCAGTCCTAAGAA  100

seq1  ATTATATTATTCATTTTATGAAAAATTGATGACCATTGGGTGCTAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTATTCATTTTATGAAAAATTGATGACCATTGGGTGCTAAGTGA  150

seq1  CAAACTATTTGATGTCCCCCATTAAAAATAAATCTAATCTATCTATCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATTTGATGTCCCCCATTAAAAATAAATCTAATCTATCTATCCAT  200

seq1  CCATTTTCATCTCTCTCTCTTTCTCTTTCTCTACATATGACTTTCAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCATCTCTCTCTCTTTCTCTTTCTCTACATATGACTTTCAAAGA  250

seq1  TGGAAATTTAACTCACAAACCAAAAATTTATCATTGCAGAGCATATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTTAACTCACAAACCAAAAATTTATCATTGCAGAGCATATAATT  300

seq1  TAGTATGTATAATATTGTTGTATTATCCCTCCGTGATCAAAATCTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTATAATATTGTTGTATTATCCCTCCGTGATCAAAATCTAAAAT  350

seq1  ATTTCCAACCATGCTCTCAAAGCTACTAAAGAAACATACATATTAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAACCATGCTCTCAAAGCTACTAAAGAAACATACATATTAGCAGT  400

seq1  CTCCATCCCGTACCCCATCCCATGTCAACCAATGATCTATTTACATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCCGTACCCCATCCCATGTCAACCAATGATCTATTTACATCTCA  450

seq1  ACAGAGAGCCTATTTTAGACCCGTCTTTCCAATGGAGTAATACAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCCTATTTTAGACCCGTCTTTCCAATGGAGTAATACAGTATTT  500

seq1  GTTTAGCTTTAAAAATATGGACACTTGTCTGCCTTTTCTCCCATAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCTTTAAAAATATGGACACTTGTCTGCCTTTTCTCCCATAACACT  550

seq1  GCATTCAATAGTCATATTTTATGTTTCTCTAAGAAGAACAGTTTTGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAATAGTCATATTTTATGTTTCTCTAAGAAGAACAGTTTTGAAGT  600

seq1  GATAACTTGTTACAATTCAGTAAAAACATTAATGAAAAACTGACAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTGTTACAATTCAGTAAAAACATTAATGAAAAACTGACAAATAA  650

seq1  TGAATGGGGTAAGAAACAGTCTCTTATATCATCGGGAGTCTGAAAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGGTAAGAAACAGTCTCTTATATCATCGGGAGTCTGAAAGAAAC  700

seq1  CATCAGATCCATGATTCCAAAAAGGTGAGAAGCATAGATAGCCAATGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATCCATGATTCCAAAAAGGTGAGAAGCATAGATAGCCAATGAAG  750

seq1  AACTGCTGTAAACAGCAGCCTGTAAGGTAAAGCACAAAAAACCACTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTAAACAGCAGCCTGTAAGGTAAAGCACAAAAAACCACTGTAT  800

seq1  GCTTGCTTTATAATGGAGACAAAGGCTATAACTCATATCACTAGGGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTTATAATGGAGACAAAGGCTATAACTCATATCACTAGGGAGAG  850

seq1  CAACCAAGAAGGAATGGGGTCATCCCTTCTTCTCTTGCTCTGGGGCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGAAGGAATGGGGTCATCCCTTCTTCTCTTGCTCTGGGGCCAGA  900

seq1  AGCAGAAGGGAAAGTGAAGTCTTGTCTGTCTGCTGATCTGTGGGAATTTG  950
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCAGAA-GGAAAGTGAAGTC-TGTCTGTCTGCTGATCTGTGGGAATTTG  948

seq1  GGATGCAAGTCACTTTCTTTAAAAGTCTTCCATTCCTCTGTCAAGGGACC  1000
      |||||||||||||||||||  |||||||  |||| ||||||| ||||| |
seq2  GGATGCAAGTCACTTTCTT--AAAGTCT--CATT-CTCTGTC-AGGGA-C  991

seq1  TCTGGGTTCTTTTCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAACA  1050
      |||||||   |||||||| ||||||| ||| ||||| ||||||||| |||
seq2  TCTGGGT--CTTTCAGCT-CTGGCTA-TAT-AATAA-GCTGCTATG-ACA  1034

seq1  TACTGGAGCATGTGTCCTTATTACATGTTGGAGCATTTTCTGGGTATATA  1100
      ||||||||||||||||  || |||||||  ||||| |||||||  |||  
seq2  TACTGGAGCATGTGTC--TA-TACATGT--GAGCA-TTTCTGGCAATA--  1076

seq1  CCCAGGAGTGGTATAGCTGGGTCTTCAGGTAGTAATATGTCCAATTATCT  1150
       ||||||| ||||||||||||| |||| |||||||||||||    |||||
seq2  -CCAGGAG-GGTATAGCTGGGT-TTCA-GTAGTAATATGTC---ATATCT  1119

seq1  GAGGAACCACCAAACTGACTTCCAGGGTGGTTGTACCAGCTTGCAATCCA  1200
      || ||||   ||| ||||||||   |||||||    |||| |||||| ||
seq2  GA-GAAC--ACAACCTGACTTC--AGGTGGTT---ACAGC-TGCAAT-CA  1159

seq1  TCC  1203
      |||
seq2  TCC  1162

seq1: chr10_111667011_111668159
seq2: B6Ng01-168N23.g_68_1192 (reverse)

seq1  CTCT-GCTCCCATAGAATGTATTTCATCTCACAAT-CACAATTTGTCTTT  48
      |||| |||||||| ||||||| ||||| ||||||| ||| | |||||  |
seq2  CTCTCGCTCCCATGGAATGTA-TTCAT-TCACAATACACCA-TTGTC--T  45

seq1  GATAAAGAAAAATTAGGTTCCCAGGGCATTGTGAAATTATTGTGGGTTGG  98
      |||||||||||  || |||||||||||| ||||||||   |||||    |
seq2  GATAAAGAAAA--TA-GTTCCCAGGGCA-TGTGAAAT--ATGTGG---TG  86

seq1  GGTCAGAAATTTAAACTCGCAGATATTCAGAACAATTCTGGTTTAAATTC  148
       ||||||||||| |||||||||| | ||||||||||||| ||||||||  
seq2  AGTCAGAAATTT-AACTCGCAGA-AATCAGAACAATTCT-GTTTAAAT--  131

seq1  TTCTGATGAATTTATAACTTTACAATTTCTAAAGATTTAATTAGCTTTGC  198
       ||||||||| |||| ||||||| |||||||||||||||| |||||||||
seq2  CTCTGATGAA-TTAT-ACTTTACCATTTCTAAAGATTTAA-TAGCTTTGC  178

seq1  AATGTTAAAGATTCAATTCTGTGTGGAGTGCACACTTTCAACAGGCAATA  248
      |||| |||||||   |||||||||| ||||||||||||||||||||||||
seq2  AATG-TAAAGAT--CATTCTGTGTGAAGTGCACACTTTCAACAGGCAATA  225

seq1  CGAAATCACTGACAATCAACAATATAATTAAAGATTAAACAAAATATTAA  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGAAATCACTGACAATCAACAATAT-ATTAAAGATTAAACAAAATATTAA  274

seq1  ACAAATGTACTATGTGAAACATAATGTTAGGAAACTTGCACATAGACATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTACTATGTGAAACATAATGTTAGGAAACTTGCACATAGACATG  324

seq1  TACAGATGGATCTTGAGGAATGGTTACATCTAGGTGATTAACATGTAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGATCTTGAGGAATGGTTACATCTAGGTGATTAACATGTAGTA  374

seq1  CTTCACATAGATTTTTTTTTGTGGAAGAGCAACTTCAGAATCTTTCAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATAGATTTTTTTTTGTGGAAGAGCAACTTCAGAATCTTTCAAAA  424

seq1  TTAAAATATATTATCAAGTACATTCAGAACGTTGCAAATTAATGTCTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATATTATCAAGTACATTCAGAACGTTGCAAATTAATGTCTTAA  474

seq1  ACTTATTTTTTCTAAACTGGCATTTTATATTGTTTGATTACAGCTCAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTTTCTAAACTGGCATTTTATATTGTTTGATTACAGCTCAACA  524

seq1  CCCACCACATGGGCGCACACTCATCACCATTCTGTGAACAGACATAAGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACATGGGCGCACACTCATCACCATTCTGTGAACAGACATAAGCT  574

seq1  GCTTGGAGCTTTCGTCTTCCTGAAGGGTGTGTGAACATATGTATGAACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGCTTTCGTCTTCCTGAAGGGTGTGTGAACATATGTATGAACAA  624

seq1  TAAACAAGACCCATAAAAGATGGAACAGGGGCAGGTCAGGCATTGGTACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGACCCATAAAAGATGGAACAGGGGCAGGTCAGGCATTGGTACA  674

seq1  CATCCACAGATTCCAAAGACCAGATTCAGGCTAAATTCAGCCACTGAACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACAGATTCCAAAGACCAGATTCAGGCTAAATTCAGCCACTGAACC  724

seq1  CAAGATGACAGGTGCTGATCATAACTCTTTCCCCTTCTCCTCCTTTCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGACAGGTGCTGATCATAACTCTTTCCCCTTCTCCTCCTTTCCTT  774

seq1  AGTCTGCAGCATCCAGTTCTACAGGAAAGGTTCTCAGCTTCTGCAGGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCAGCATCCAGTTCTACAGGAAAGGTTCTCAGCTTCTGCAGGCCT  824

seq1  GCTGTGGAAAGCGCAGCCCAGCAGCCAGGCTGCTTCATGTTGGTTACCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGAAAGCGCAGCCCAGCAGCCAGGCTGCTTCATGTTGGTTACCTG  874

seq1  GTTTTGGCCTCAGCAAGAACTCTGACTCCAGGAGGCTCCACCTCAAAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGCCTCAGCAAGAACTCTGACTCCAGGAGGCTCCACCTCAAAGCA  924

seq1  CCATGCATCAAGATGATTTTATAGGACCTGCAATGATGCATCTTGCCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATCAAGATGATTTTATAGGACCTGCAATGATGCATCTTGCCTTT  974

seq1  TCCTGTAGTTCTCGAATCACCGGATCAGAAGAAAGATACAGGAATAGCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGTTCTCGAATCACCGGATCAGAAGAAAGATACAGGAATAGCAA  1024

seq1  AGCTGTTAGAAATCACTGTGTCTGAAGATATGCTGAAGGCAACCACACCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTAGAAATCACTGTGTCTGAAGATATGCTGAAGGCAACCACACCA  1074

seq1  GAGCAAGCAGCCTGCAACCACAGCTTTGGTTGTTGTTTCAAGCAAGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCAGCCTGCAACCACAGCTTTGGTTGTTGTTTCAAGCAAGAATT  1124

seq1  C  1149
      |
seq2  C  1125