BAC Information

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BAC

Clone NameB6Ng01-169O20
Chromosome4 (Build37)10 (Build37)
Map Location 93,624,524 - 93,625,640104,053,595 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169O20.bB6Ng01-169O20.g
ACCDH960773DH960774
length1,1061,012
definitionDH960773|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O20, 5' end.DH960774|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,624,524 - 93,625,640)(104,053,595 - 104,054,363)
sequence
gaattcagctatgcatcttgaattagaaaatattagatgttgcaaaatta
aatgaggaaacagagaaagaaaaaatacaagccagccccttttatttcct
gttaattagctatgaattgtaattagtgaaaacagtacaccccatccagg
tactccctccctccttctttctctgtacataggtagatctttatcatact
ttagaaatcaatgtaaacgtcacagttctcagtctaaactatttggttta
gatttcattctctaagcctttacttccttcataatgcataatttactggt
tattgatattggttttgtttttttgtttttgtttttgtattttttttcaa
tctcaagggggaattcagtttaaaaaaagatttattccagacattaaagc
agacacataagtcaagtcatttgctaaatgaatattaaatcacccactac
tttttatttatacaagatagattcatttggtggctgcctggatgagccat
ttttctggtgctagtaactgaactctaactaattttgagatccaacaaac
cctatcaaataaatatgcagtcatgttatatttgtgtttaagttatatgc
aggcatatgcatgcttacacacaaatatacatgtgaaggtcagaggctga
tgttatccatattcctctctgattcttcaccatacctttttacacagtct
ctcacttgaacctgagcttgtggtttcatagactgaattgccagcaagtc
tccagaattactttgtctctcctaccaccaatcccgggtttacacacatg
actcacgcccagcttttccatggacactgggattccaactcagctcatta
tgcttacacatgtacacatgcgcatgcactcataaacacacacaaaaatc
aaaaaaactttataacctgaaccatctctccagcccttgagttatctcta
aaatgcaaaacatatctttggcacagatattggactatatttttagtacc
tataatatacaaatatggtaagagcatgagagaaatatagctagaccctg
ggtggaaagctcacaataactaggttctactctgctatggatttcaggag
aatggc
gaattctcacctgaggaatactgaaaggctgagaagcacctgagaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
gaattgctagcttatacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccaacaatacatctcctgggc
atatacccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactacacagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattagcccagaaac
ttagtaaagcgagatataaggtacaatatgcgaaacacatgaaactgaag
aagaacgaagaccaaatgtgaacactttgttccttcttagaattggaaac
aatcacccatggaaggagttaaagagacaaagtttggagctgagacaaaa
ggatggaccatctagagactgccatatccagggatccatcccataattag
cctccaagcgatgacaccattgcatacattagcaagcctctgttgcaatt
ccatgtattcttatctgacctttagagttctaaacgggaagaagtattct
gcatccagggatttcatccttctctcctgaaagagtaatgggaatagttt
gctaactgtgggtcatttgaggttaaggtgtctgagccatcgtatgtgaa
ctgttaagaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93624524_93625640
seq2: B6Ng01-169O20.b_48_1153

seq1  GAATTCAGCTATGCATCTTGAATTAGAAAATATTAGATGTTGCAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTATGCATCTTGAATTAGAAAATATTAGATGTTGCAAAATTA  50

seq1  AATGAGGAAACAGAGAAAGAAAAAATACAAGCCAGCCCCTTTTATTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAAACAGAGAAAGAAAAAATACAAGCCAGCCCCTTTTATTTCCT  100

seq1  GTTAATTAGCTATGAATTGTAATTAGTGAAAACAGTACACCCCATCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTAGCTATGAATTGTAATTAGTGAAAACAGTACACCCCATCCAGG  150

seq1  TACTCCCTCCCTCCTTCTTTCTCTGTACATAGGTAGATCTTTATCATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTCCCTCCTTCTTTCTCTGTACATAGGTAGATCTTTATCATACT  200

seq1  TTAGAAATCAATGTAAACGTCACAGTTCTCAGTCTAAACTATTTGGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATCAATGTAAACGTCACAGTTCTCAGTCTAAACTATTTGGTTTA  250

seq1  GATTTCATTCTCTAAGCCTTTACTTCCTTCATAATGCATAATTTACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTCTCTAAGCCTTTACTTCCTTCATAATGCATAATTTACTGGT  300

seq1  TATTGATATTGGTTTTGTTTTTTTGTTTTTGTTTTTGTATTTTTTTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATATTGGTTTTGTTTTTTTGTTTTTGTTTTTGTATTTTTTTTCAA  350

seq1  TCTCAAGGGGGAATTCAGTTTAAAAAAAGATTTATTCCAGACATTAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGGGGAATTCAGTTTAAAAAAAGATTTATTCCAGACATTAAAGC  400

seq1  AGACACATAAGTCAAGTCATTTGCTAAATGAATATTAAATCACCCACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATAAGTCAAGTCATTTGCTAAATGAATATTAAATCACCCACTAC  450

seq1  TTTTTATTTATACAAGATAGATTCATTTGGTGGCTGCCTGGATGAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTATACAAGATAGATTCATTTGGTGGCTGCCTGGATGAGCCAT  500

seq1  TTTTCTGGTGCTAGTAACTGAACTCTAACTAATTTTGAGATCCAACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGTGCTAGTAACTGAACTCTAACTAATTTTGAGATCCAACAAAC  550

seq1  CCTATCAAATAAATATGCAGTCATGTTATATTTGTGTTTAAGTTATATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAAATAAATATGCAGTCATGTTATATTTGTGTTTAAGTTATATGC  600

seq1  AGGCATATGCATGCTTACACACAAATATACATGTGAAGGTCAGAGGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATGCATGCTTACACACAAATATACATGTGAAGGTCAGAGGCTGA  650

seq1  TGTTATCCATATTCCTCTCTGATTCTTCACCATACCTTTTTACACAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCCATATTCCTCTCTGATTCTTCACCATACCTTTTTACACAGTCT  700

seq1  CTCACTTGAACCTGAGCTTGTGGTTTCATAGACTGAATTGCCAGCAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGAACCTGAGCTTGTGGTTTCATAGACTGAATTGCCAGCAAGTC  750

seq1  TCCAGAATTACTTTGTCTCTCCTACCACCAATCCCGGGTTTACACACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATTACTTTGTCTCTCCTACCACCAATCCCGGGTTTACACACATG  800

seq1  ACTCACGCCCAGCTTTTCCATGGACACTGGGATTCCAACTCAGCTCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGCCCAGCTTTTCCATGGACACTGGGATTCCAACTCAGCTCATTA  850

seq1  TGCTTACACATGTACACATGCGCATGCACTCATAAACACACACAAAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACACATGTACACATGCGCATGCACTCATAAACACACACAAAAATC  900

seq1  AAAAAAACTTTATAACCTGAACCATCTCTCCAGCCCTTGAGTTATCTCTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAAAACTTTATAACCTGAACCATCTCTCCAGCCCTTGAGTTATCTC-T  949

seq1  AAAATGCAAAACATATTCTTTGGCACAGATATTGGACTATATTTTTAGTA  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAATGCAAAACATA-TCTTTGGCACAGATATTGGACTATATTTTTAGTA  998

seq1  CCTATAATATACAAATATGGTTAAGAGCAATGAAGAGAAATATAGCTTAG  1050
      |||||||||||||||||||| ||||||| ||| ||||||||||||| |||
seq2  CCTATAATATACAAATATGG-TAAGAGC-ATG-AGAGAAATATAGC-TAG  1044

seq1  ACCCTGGGTGGAAAAGCTCACAATAACTAAGTTTCCTACTCTGCTATAGG  1100
      ||||||||||| ||||||||||||||||| |||  |||||||||||| ||
seq2  ACCCTGGGTGG-AAAGCTCACAATAACTAGGTT--CTACTCTGCTAT-GG  1090

seq1  ATTTCAGGAGACATGGC  1117
      ||||||||||| |||||
seq2  ATTTCAGGAGA-ATGGC  1106

seq1: chr10_104053595_104054363
seq2: B6Ng01-169O20.g_66_622 (reverse)

seq1  GAGTTCCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTC  50
      |||||| ||||||||||||||||| ||||||||||||| | |||||||||
seq2  GAGTTCTTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTC  50

seq1  CATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCAT  100
      || |||||||||||||||||||||||||||||||||||||||||||    
seq2  CAACCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCT----  96

seq1  TTACATTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAA  150
                                                        
seq2  --------------------------------------------------  96

seq1  ATAATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTA  200
                                                        
seq2  --------------------------------------------------  96

seq1  ATTAAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATA  250
                                                        
seq2  --------------------------------------------------  96

seq1  ATAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATT  300
                                   ||||           |||   
seq2  ----------------------------GTGTA-----------GTA---  104

seq1  ACATTACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATC  350
                      ||||||||||||||||||||||||||| ||||||
seq2  ----------------CTCCATTGTGTAAATGTACCACATTTTTTGTATC  138

seq1  TATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTAT  400
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTAT  188

seq1  AAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTG  450
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  AAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTG  238

seq1  GGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGT  500
      || |||||||||| ||||||||||| ||| |||||| |||||||||||||
seq2  GGACATCTTCTGGGTATATGCCCAGGAGATGTATTGTTGGATCCTCCGGT  288

seq1  AGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGG  550
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  AGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGG  338

seq1  TTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTC  600
      ||||| ||||  ||||| ||||||||||||||||||||||||||||||||
seq2  TTGTATAAGCTAGCAATTCCACCAACAATGGAGGAGTGTTCCTCTTTCTC  388

seq1  CACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT  650
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  CACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTCATCTTAGCCATT  438

seq1  CTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCT  488

seq1  GATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGT  750
      |||||||||||||| |||||||||| ||||||||||||| ||| ||| ||
seq2  GATGATTAAGGATGCTGAACATTTTCTCAGGTGCTTCTCAGCCTTTCAGT  538

seq1  ATTCCTCAGGTGAGAATTC  769
      |||||||||||||||||||
seq2  ATTCCTCAGGTGAGAATTC  557