BAC Information

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BAC

Clone NameB6Ng01-170F23
Chromosome10 (Build37)
Map Location 84,722,138 - 84,884,473
singlet/doubletdoublet
Overlap geneEG666974, Btbd11
Upstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1
Downstream geneEG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170F23.bB6Ng01-170F23.g
ACCDH961103DH961104
length1,0401,082
definitionDH961103|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F23, 5' end.DH961104|Mus musculus domesticus DNA, BAC clone: B6Ng01-170F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,722,138 - 84,723,314)(84,883,397 - 84,884,473)
sequence
gaattcaaggaaatagaatgtataaaacatcagaaccaaaaagatgatgt
gaattggatgccagggaggaacagagaatgggagtgtcaatgttccaagg
atctgagaacctttcaggctgacacagtcatcagagatgtcccagaggtg
ggaggagggggaactggtcctgatgcgtttgaggagcaggaagggaagtg
gggtggtttccagggaaggctgtggtaggttctcagaggtcagtacacat
ggggctttgatgcagcagagggtttttaataaaatataaacagagcaagg
gtttgtttagagcctttcttggggaatacaaatcaatagtcattgttgtc
tttctatacaaaatctgaaatctgaaatttactgcagcaaagcgctggct
tggcactgggggcttcattgtcccatgccaggtagcttccaggatagtaa
atgtgtgttcacaagagcccatggcaaccacccagtggtgtggggtctcc
aggtgcacagggaggcaggcagaagagccctgcaaggcctctctatggtg
tctgttatctatgatttaaaccctcagttctggccacccagcagcaccct
tgttctgaagcctgccaaaaaccctcccaagaatatatgccaagcctcac
agtgtgttgaaataccatagtaggtaaaattattaagaaagaaaagagca
caaaagatagatacttctccaactttccctgcatatgataaagctgactt
tttagaagtctatttctcctttagtttcctcttcttcctttccctctctc
ctcttctcctcttcttcttcctcccctcctcctcttctttttcttcctcc
ccctcttcctcctctcctcttatcctcctcctccgtgtcatcatcattat
catctatttttttgagataggtctcatgctaagggccaaatctgtctgtg
gtggttgaatgggcttggtccatgacaagtgccatcattaggaggtgtga
cttgtttgaagaagtgtgtctgttgacaaaatatgctcct
gaattcactattatttttattattgctccactgtgtcccccctgagcctg
taatagaaagctagagaagcgcttcattggaggaagaaaatagagttctg
agctccaagttaagcagcctgtggtgaaaagatgaaaacagataacagga
taagaaaacggctttgtgtgtgtcagccccaggagctgccgggttcccca
gtgagactgaagacagctggacagcgatgccccggcctcccaaacaccag
ctgtccaaggaagtccagaccccacctgccgtaacaggctgcagcccaca
tgctgccttctgtgcatgtcatgccgtttacaacacagaaaatctaaacc
caccggagtgttagctccaaggccactggctcagcgctgcagctcaggaa
cctgtaagaggcagcctgggaaggtatggaaaaggtcctgcgagctagag
acactcctggcttggtctgtgattcatctgcatgtaagagtaggtatccc
taagacggtacatgcagagactcaatgctactcagcaatccaaagcaaca
ccatcctccaaggcttccagaaaggcttctgctggtcgcaatgagtgcag
tgtgactcctcctggggaggcatggaccagtgcacagtcagcccacatag
ggctccaacggcaggctaaagaaacgattcccattcctgaagtatttcct
caccttgctgagtcacaggaggaagtgagaagcctgtgctcctgcgggca
ggcaggccactgggcagccctgagttctgaagtgtttacctctctgcatg
cccactgcctccacggaaccctgtctcctcttctccaagtccctgtcttt
ctgtgccttcacacacaaaccctgagaaaaggctcaaaagtataaatcca
cttgtactgtcctgatttccagaataccacagccccaagtctcttcaata
gaatggtggcccaagttgccaccaggacttatattggcttttggtgggca
atttttatgccagatacaaaccttgatgaccgactggagaagcccattct
gcccctgctcttgcaaacaaacatcaaactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_84722138_84723314
seq2: B6Ng01-170F23.b_48_1087

seq1  GAATTCAAGGAAATAGAATGTATAAAACATCAGAACCAAAAAGATGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAATAGAATGTATAAAACATCAGAACCAAAAAGATGATGT  50

seq1  GAATTGGATGCCAGGGAGGAACAGAGAATGGGAGTGTCAATGTTCCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGATGCCAGGGAGGAACAGAGAATGGGAGTGTCAATGTTCCAAGG  100

seq1  ATCTGAGAACCTTTCAGGCTGACACAGTCATCAGAGATGTCCCAGAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAACCTTTCAGGCTGACACAGTCATCAGAGATGTCCCAGAGGTG  150

seq1  GGAGGAGGGGGAACTGGTCCTGATGCGTTTGAGGAGCAGGAAGGGAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGGGAACTGGTCCTGATGCGTTTGAGGAGCAGGAAGGGAAGTG  200

seq1  GGGTGGTTTCCAGGGAAGGCTGTGGTAGGTTCTCAGAGGTCAGTACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTTTCCAGGGAAGGCTGTGGTAGGTTCTCAGAGGTCAGTACACAT  250

seq1  GGGGCTTTGATGCAGCAGAGGGTTTTTAATAAAATATAAACAGAGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTGATGCAGCAGAGGGTTTTTAATAAAATATAAACAGAGCAAGG  300

seq1  GTTTGTTTAGAGCCTTTCTTGGGGAATACAAATCAATAGTCATTGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTAGAGCCTTTCTTGGGGAATACAAATCAATAGTCATTGTTGTC  350

seq1  TTTCTATACAAAATCTGAAATCTGAAATTTACTGCAGCAAAGCGCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATACAAAATCTGAAATCTGAAATTTACTGCAGCAAAGCGCTGGCT  400

seq1  TGGCACTGGGGGCTTCATTGTCCCATGCCAGGTAGCTTCCAGGATAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGGGGGCTTCATTGTCCCATGCCAGGTAGCTTCCAGGATAGTAA  450

seq1  ATGTGTGTTCACAAGAGCCCATGGCAACCACCCAGTGGTGTGGGGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTCACAAGAGCCCATGGCAACCACCCAGTGGTGTGGGGTCTCC  500

seq1  AGGTGCACAGGGAGGCAGGCAGAAGAGCCCTGCAAGGCCTCTCTATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCACAGGGAGGCAGGCAGAAGAGCCCTGCAAGGCCTCTCTATGGTG  550

seq1  TCTGTTATCTATGATTTAAACCCTCAGTTCTGGCCACCCAGCAGCACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATCTATGATTTAAACCCTCAGTTCTGGCCACCCAGCAGCACCCT  600

seq1  TGTTCTGAAGCCTGCCAAAAACCCTCCCAAGAATATATGCCAAGCCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGAAGCCTGCCAAAAACCCTCCCAAGAATATATGCCAAGCCTCAC  650

seq1  AGTGTGTTGAAATACCATAGTAGGT-AAATTATTAAGAAAGAAAAGAGCA  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTGTGTTGAAATACCATAGTAGGTAAAATTATTAAGAAAGAAAAGAGCA  700

seq1  CAAAAGATAGATACTTCTCCAACTTTCCCTGCATATGATAAAGCTGAC-T  748
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAAAGATAGATACTTCTCCAACTTTCCCTGCATATGATAAAGCTGACTT  750

seq1  TTTAGAAGTCTATTTCTCCTTTAGTTTCCTCTTCTTCCTTTCCCTCTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGTCTATTTCTCCTTTAGTTTCCTCTTCTTCCTTTCCCTCTCTC  800

seq1  CTCTTCTCCTCTTCTTCTTCCTCCCCTCCTCCTCTTCTTTTTCTTCCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCCTCTTCTTCTTCCTCCCCTCCTCCTCTTCTTTTTCTTCCTCC  850

seq1  CCCTCTTCCTCCTCTCCTCTTTATCCTCCTCCTCCGTGTCATCATCATTA  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTCTTCCTCCTCTCCTC-TTATCCTCCTCCTCCGTGTCATCATCATTA  899

seq1  TCATCTTATTTTTTTGAGATAAGGTCTCATGCTAAGGGCCAAATCTGTCT  948
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  TCATC-TATTTTTTTGAGAT-AGGTCTCATGCTAAGGGCCAAATCTGTCT  947

seq1  GTGGTGGTTTGAATGTGCTTGGTCCATGACAAGTGCCACTATTAGGAGGT  998
      ||||||| ||||||| ||||||||||||||||||||||  ||||||||||
seq2  GTGGTGG-TTGAATGGGCTTGGTCCATGACAAGTGCCATCATTAGGAGGT  996

seq1  GTGACCTGCTTGAAGGAGGTGTGGTCTTGTTAGACAAAATATG-TCACTA  1047
      ||||| || ||||| || |||| ||| |||| ||||||||||| ||    
seq2  GTGACTTGTTTGAA-GAAGTGT-GTC-TGTT-GACAAAATATGCTCCT--  1040

seq1  TGGAGGCAGTGCTTTGAGGTCTTATATGTATATGCTCAAGTCTGGCCAGT  1097
                                                        
seq2  --------------------------------------------------  1040

seq1  TTGAGACAATCTTGCCTGGCTTCCTGTGAGGAGTCAGTCTTCTGCTGCCT  1147
                                                        
seq2  --------------------------------------------------  1040

seq1  GTAGATTAAGATGTACAACTCTTGGCTCCT  1177
                                    
seq2  ------------------------------  1040

seq1: chr10_84883397_84884473
seq2: B6Ng01-170F23.g_66_1147 (reverse)

seq1  GGAGTTTGGTGTTTGTTTGC-AGAGCAGTGGGCAGATATGGCTTCTCCAG  49
      |||||||| ||||||||||| ||||||| |||||||   |||||||||||
seq2  GGAGTTTGATGTTTGTTTGCAAGAGCAG-GGGCAGAATGGGCTTCTCCAG  49

seq1  TCGGTCATCCAGG-TTGTATCTTGCAT-AAGATTGCCCACC-AAAGGCAA  96
      ||||||||| ||| |||||||| |||| || |||||||||| |||| |||
seq2  TCGGTCATCAAGGTTTGTATCTGGCATAAAAATTGCCCACCAAAAGCCAA  99

seq1  TATAGGTCCTGGT-GCACCTT-GGCCACCATTCTATTGAGGAGACTTGGG  144
      |||| |||||||| ||| ||| ||||||||||||||||| ||||||||||
seq2  TATAAGTCCTGGTGGCAACTTGGGCCACCATTCTATTGAAGAGACTTGGG  149

seq1  GCTGTGGTATTCTGGAAATCAGGACAGTACAAGTGGATTTATACTTTTGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTATTCTGGAAATCAGGACAGTACAAGTGGATTTATACTTTTGA  199

seq1  GCCTTTTCTCAGGGTTTGTGTGTGAAGGCACAGAAAGACAGGGACTTGGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCTCAGGGTTTGTGTGTGAAGGCACAGAAAGACAGGGACTTGGA  249

seq1  GAAGAGGAGACAGGGTTCCGTGGAGGCAGTGGGCATGCAGAGAGGTAAAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAGACAGGGTTCCGTGGAGGCAGTGGGCATGCAGAGAGGTAAAC  299

seq1  ACTTCAGAACTCAGGGCTGCCCAGTGGCCTGCCTGCCCGCAGGAGCACAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAACTCAGGGCTGCCCAGTGGCCTGCCTGCCCGCAGGAGCACAG  349

seq1  GCTTCTCACTTCCTCCTGTGACTCAGCAAGGTGAGGAAATACTTCAGGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCACTTCCTCCTGTGACTCAGCAAGGTGAGGAAATACTTCAGGAA  399

seq1  TGGGAATCGTTTCTTTAGCCTGCCGTTGGAGCCCTATGTGGGCTGACTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCGTTTCTTTAGCCTGCCGTTGGAGCCCTATGTGGGCTGACTGT  449

seq1  GCACTGGTCCATGCCTCCCCAGGAGGAGTCACACTGCACTCATTGCGACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTCCATGCCTCCCCAGGAGGAGTCACACTGCACTCATTGCGACC  499

seq1  AGCAGAAGCCTTTCTGGAAGCCTTGGAGGATGGTGTTGCTTTGGATTGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGCCTTTCTGGAAGCCTTGGAGGATGGTGTTGCTTTGGATTGCT  549

seq1  GAGTAGCATTGAGTCTCTGCATGTACCGTCTTAGGGATACCTACTCTTAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCATTGAGTCTCTGCATGTACCGTCTTAGGGATACCTACTCTTAC  599

seq1  ATGCAGATGAATCACAGACCAAGCCAGGAGTGTCTCTAGCTCGCAGGACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATGAATCACAGACCAAGCCAGGAGTGTCTCTAGCTCGCAGGACC  649

seq1  TTTTCCATACCTTCCCAGGCTGCCTCTTACAGGTTCCTGAGCTGCAGCGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATACCTTCCCAGGCTGCCTCTTACAGGTTCCTGAGCTGCAGCGC  699

seq1  TGAGCCAGTGGCCTTGGAGCTAACACTCCGGTGGGTTTAGATTTTCTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGTGGCCTTGGAGCTAACACTCCGGTGGGTTTAGATTTTCTGTG  749

seq1  TTGTAAACGGCATGACATGCACAGAAGGCAGCATGTGGGCTGCAGCCTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACGGCATGACATGCACAGAAGGCAGCATGTGGGCTGCAGCCTGT  799

seq1  TACGGCAGGTGGGGTCTGGACTTCCTTGGACAGCTGGTGTTTGGGAGGCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCAGGTGGGGTCTGGACTTCCTTGGACAGCTGGTGTTTGGGAGGCC  849

seq1  GGGGCATCGCTGTCCAGCTGTCTTCAGTCTCACTGGGGAACCCGGCAGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATCGCTGTCCAGCTGTCTTCAGTCTCACTGGGGAACCCGGCAGCT  899

seq1  CCTGGGGCTGACACACACAAAGCCGTTTTCTTATCCTGTTATCTGTTTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCTGACACACACAAAGCCGTTTTCTTATCCTGTTATCTGTTTTC  949

seq1  ATCTTTTCACCACAGGCTGCTTAACTTGGAGCTCAGAACTCTATTTTCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCACCACAGGCTGCTTAACTTGGAGCTCAGAACTCTATTTTCTT  999

seq1  CCTCCAATGAAGCGCTTCTCTAGCTTTCTATTACAGGCTCAGGGGGGACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATGAAGCGCTTCTCTAGCTTTCTATTACAGGCTCAGGGGGGACA  1049

seq1  CAGTGGAGCAATAATAAAAATAATAGTGAATTC  1077
      |||||||||||||||||||||||||||||||||
seq2  CAGTGGAGCAATAATAAAAATAATAGTGAATTC  1082