BAC Information

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BAC

Clone NameB6Ng01-170I06
Chromosome10 (Build37)
Map Location 109,569,723 - 109,698,827
singlet/doubletdoublet
Overlap geneLOC100042502, LOC100042506
Upstream geneNav3, LOC100042497
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170I06.bB6Ng01-170I06.g
ACCDH961209DH961210
length1,1551,138
definitionDH961209|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I06, 5' end.DH961210|Mus musculus domesticus DNA, BAC clone: B6Ng01-170I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,569,723 - 109,570,875)(109,697,667 - 109,698,827)
sequence
gaattctattttgcatgtctgagttatacagcatttttcatttgtgccct
taatttacaaatgtattcagcttaagaaataacaaactgttcaggctcca
tatctcccattgctaggagttttagctatggacaacctcatagattcgtg
ggagtttccattgtcctaggtttctagctcaatgtagagataccgttcat
attccctttgtctctccttcagccctcccagtgctgatccttcctggtcc
catctacagtccatgtcagcagttgagccctgagccctttctcatattaa
ttagttaatattagaaagtaaaacccttaaaaaagaaataacaaactgaa
aaccaagtaaacctgcattttacctagaaagtaaggtatgtactggatat
tcccatagtcatcagtaaactgcatgtgtttatcattgcaacagctaata
ctatggctgaagagaagattgtattttatatagttaaaaatacccaaaaa
tattcaagaaaaaaaatgttcatcttcctaaagtaagagatgagtaaact
tagcttagaattagtttacaagacacttaaaatgaataggaaaatttatg
tttaatgtggttttaaagagtacaatttacagcacttaaatagaaattaa
aaagagcattgttgctgtaaactgtaaattaagcagtaagtatgagaaga
tgcaaacagtttctttaatgaaatcaacactaaagaggaatatttgttaa
cacaattagtattgaaaaaagtattcactttaaatattcatctttggggt
aaagggggcattttaccaccaaaggtctcttaaattactcgaatctattc
tactgccagattgtatgttcttatttttttctccacatctcctatgtata
tgagaaatggtgttaaaacatgaacattagtaattttagctatcatcaaa
taaacactcaaaatgcacataaagttaacttttttgtgaacaattcatca
tagtttggaatagcatgaccctatacagaaatacccacacaatttatttc
tgtgcatctggaaagtcctcctctgtattactggagaacataaaagtctg
tttctgagaaaaatccagatggattttgacatccctagtccctccttaat
gagtt
gaattctccctgaaccatttccttataacgctttaaaaggatgaactgtt
agagtatgtgaattgtgaattatgcatcaagaagtcgttactgagcacaa
aaacacgacacaaagtgagcccaggtggagttacttgattggagggaagc
actgctgatcttgatttttcaagagtgagtttgattttctggcatttgaa
ttatttggcctgtgctggctgcaagctttttgggtgctgtgtgtggaaga
ttcagatttttcttcttgttcaggagtgataacccaaagaagaaaatgaa
aagtactatttaatgagtggccggttatggtttaagcatttaagtgcttg
tgtgttagaagagacagtcaaagcactagtatgaattttcattacattaa
aaaccctcttctgtacagagccaccaacctctgctcatgcaattgccaga
gacagagcgacccttctgtaattttagtttaaattcctgtagcttttcaa
cagagaggccacagtgtatgaatttgagatgagtagagagcagttcactt
tacgttaagaaaaagtttattcatctaggttaactatctttcaaagctct
ggtttctagtaattcttttgctatttattcacttaaatgcagcaatagta
agaatcctgaaaatttttttctatttatttaaagatgaaaatagtcttta
agtagtaaagaatctttgcaaaccaggatatgtttcaatctgtgtttttc
ttaggaaacctcaaaggtaatttcattttggaatcaaactgtaacactgt
agtgttttacttggcgaattagcattgctgtatattcaatacaaatatga
tcataaatctatgttttgagaagtttgcgttttattctcataccccttct
cccttagggaaattgcatgtattttttttagtattcaaatataaaacaaa
tgaaacaggctgtgaaacgatatggaaatgtcaatgcaaattggtgtatt
atcctttcattatcctagatggataggagtgcctgcctagaaaatttccc
tagaaatttataaaaatcaagaagattttagaaaaacacaaccatgtaaa
accaccctttaaaagtcttcagtgtttttccattttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109569723_109570875
seq2: B6Ng01-170I06.b_47_1201

seq1  GAATTCTATTTTGCATGTCTGAGTTATACAGCATTTTTCATTTGTGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTTGCATGTCTGAGTTATACAGCATTTTTCATTTGTGCCCT  50

seq1  TAATTTACAAATGTATTCAGCTTAAGAAATAACAAACTGTTCAGGCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACAAATGTATTCAGCTTAAGAAATAACAAACTGTTCAGGCTCCA  100

seq1  TATCTCCCATTGCTAGGAGTTTTAGCTATGGACAACCTCATAGATTCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCATTGCTAGGAGTTTTAGCTATGGACAACCTCATAGATTCGTG  150

seq1  GGAGTTTCCATTGTCCTAGGTTTCTAGCTCAATGTAGAGATACCGTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCCATTGTCCTAGGTTTCTAGCTCAATGTAGAGATACCGTTCAT  200

seq1  ATTCCCTTTGTCTCTCCTTCAGCCCTCCCAGTGCTGATCCTTCCTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTTGTCTCTCCTTCAGCCCTCCCAGTGCTGATCCTTCCTGGTCC  250

seq1  CATCTACAGTCCATGTCAGCAGTTGAGCCCTGAGCCCTTTCTCATATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACAGTCCATGTCAGCAGTTGAGCCCTGAGCCCTTTCTCATATTAA  300

seq1  TTAGTTAATATTAGAAAGTAAAACCCTTAAAAAAGAAATAACAAACTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAATATTAGAAAGTAAAACCCTTAAAAAAGAAATAACAAACTGAA  350

seq1  AACCAAGTAAACCTGCATTTTACCTAGAAAGTAAGGTATGTACTGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTAAACCTGCATTTTACCTAGAAAGTAAGGTATGTACTGGATAT  400

seq1  TCCCATAGTCATCAGTAAACTGCATGTGTTTATCATTGCAACAGCTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGTCATCAGTAAACTGCATGTGTTTATCATTGCAACAGCTAATA  450

seq1  CTATGGCTGAAGAGAAGATTGTATTTTATATAGTTAAAAATACCCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCTGAAGAGAAGATTGTATTTTATATAGTTAAAAATACCCAAAAA  500

seq1  TATTCAAGAAAAAAAATGTTCATCTTCCTAAAGTAAGAGATGAGTAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGAAAAAAAATGTTCATCTTCCTAAAGTAAGAGATGAGTAAACT  550

seq1  TAGCTTAGAATTAGTTTACAAGACACTTAAAATGAATAGGAAAATTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGAATTAGTTTACAAGACACTTAAAATGAATAGGAAAATTTATG  600

seq1  TTTAATGTGGTTTTAAAGAGTACAATTTACAGCACTTAAATAGAAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGGTTTTAAAGAGTACAATTTACAGCACTTAAATAGAAATTAA  650

seq1  AAAGAGCATTGTTGCTGTAAACTGTAAATTAAGCAGTAAGTATGAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCATTGTTGCTGTAAACTGTAAATTAAGCAGTAAGTATGAGAAGA  700

seq1  TGCAAACAGTTTCTTTAATGAAATCAACACTAAAGAGGAATATTTGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACAGTTTCTTTAATGAAATCAACACTAAAGAGGAATATTTGTTAA  750

seq1  CACAATTAGTATTGAAAAAAGTATTCACTTTAAATATTCATCTTTGGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTAGTATTGAAAAAAGTATTCACTTTAAATATTCATCTTTGGGGT  800

seq1  AAAGGGGGCATTTTACCACCAAAGGTCTCTTAAATTACTCGAATCTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGCATTTTACCACCAAAGGTCTCTTAAATTACTCGAATCTATTC  850

seq1  TACTGCCAGATTGTATGTTCTTATTTTTTTCTCCACATCTCCTATGTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCAGATTGTATGTTCTTATTTTTTTCTCCACATCTCCTATGTATA  900

seq1  TGAGAAATGGTGTTAAAACATGAACATTAGTAATTTTAGCTATCATCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGGTGTTAAAACATGAACATTAGTAATTTTAGCTATCATCAAA  950

seq1  TAAACACTCAAAATGCACATATAGTTAAC-TTTTTGTGAACCATTCATCA  999
      ||||||||||||||||||||| ||||||| ||||||||||| ||||||||
seq2  TAAACACTCAAAATGCACATAAAGTTAACTTTTTTGTGAACAATTCATCA  1000

seq1  TAG-TTAGAATAGCATGACCCTATACAGAAATACCCACAACAATTTA-TT  1047
      ||| || ||||||||||||||||||||||||||||||| |||||||| ||
seq2  TAGTTTGGAATAGCATGACCCTATACAGAAATACCCAC-ACAATTTATTT  1049

seq1  CTGT-CATCTGAAAAGTCACTCCTCTGTATTACT-GAGAACATAAGAGTC  1095
      |||| |||||| |||||| ||||||||||||||| |||||||||| ||||
seq2  CTGTGCATCTGGAAAGTC-CTCCTCTGTATTACTGGAGAACATAAAAGTC  1098

seq1  TGTTTCTGAGAAATATCCAGAATGGGATTTTGACAT-CCTAGTCACTCTA  1144
      ||||||||||||| |||||||   |||||||||||| ||||||| |||  
seq2  TGTTTCTGAGAAAAATCCAGA--TGGATTTTGACATCCCTAGTCCCTCCT  1146

seq1  TAATGAGTT  1153
      |||||||||
seq2  TAATGAGTT  1155

seq1: chr10_109697667_109698827
seq2: B6Ng01-170I06.g_67_1204 (reverse)

seq1  ATAAAAAATTGGAAAAAAAAACTTGAAATGAAATTTTTTAAAAAGTGTGG  50
      ||||||   ||||||||         | ||||   ||||  |||| ||||
seq2  ATAAAA---TGGAAAAA--------CACTGAAGACTTTT--AAAGGGTGG  37

seq1  TTTTATCATCGTATGTGTTATTTTCTAAAATC-TCTTGATGTTTTTATAA  99
      ||||| ||| || |||||  |||||||||||| ||||||  |||||||||
seq2  TTTTA-CATGGT-TGTGT--TTTTCTAAAATCTTCTTGA--TTTTTATAA  81

seq1  ATTTTCTAGGGGAAAATATTCTA-GCAGGCACTCCATTCAATCTAGGATA  148
      | |||||||||  |||| ||||| |||||||||||  || ||||||||| 
seq2  A-TTTCTAGGG--AAATTTTCTAGGCAGGCACTCCTATCCATCTAGGAT-  127

seq1  AATGAAGGTAT-ATACACCAAATTGCATTGACATTTCAATATCGTTTCAC  197
      |||||| | || ||||||||| ||||||||||||||| ||||||||||||
seq2  AATGAAAGGATAATACACCAATTTGCATTGACATTTCCATATCGTTTCAC  177

seq1  AGCCTGTTTCATTTGTTTTATATTTTGAATACTAAGAAAAAATACATGCA  247
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  AGCCTGTTTCATTTGTTTTATA-TTTGAATACTAA-AAAAAATACATGCA  225

seq1  ATTTCCCTAAAGGGAGAAGGGGTATGAGAATAAAACGCAAACTTCTCAAA  297
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCT-AAGGGAGAAGGGGTATGAGAATAAAACGCAAACTTCTCAAA  274

seq1  ACATAGATTTATGATCATATTTGTATTGAATATACAGCAATGCTAATTCG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATTTATGATCATATTTGTATTGAATATACAGCAATGCTAATTCG  324

seq1  CCAAGTAAAACACTACAGTGTTACAGTTTGATTCCAAAATGAAATTACCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAAAACACTACAGTGTTACAGTTTGATTCCAAAATGAAATTACCT  374

seq1  TTGAGGTTTCCTAAGAAAAACACAGATTGAAACATATCCTGGTTTGCAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTTCCTAAGAAAAACACAGATTGAAACATATCCTGGTTTGCAAA  424

seq1  GATTCTTTACTACTTAAAGACTATTTTCATCTTTAAATAAATAGAAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTACTACTTAAAGACTATTTTCATCTTTAAATAAATAGAAAAAA  474

seq1  ATTTTCAGGATTCTTACTATTGCTGCATTTAAGTGAATAAATAGCAAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGGATTCTTACTATTGCTGCATTTAAGTGAATAAATAGCAAAAG  524

seq1  AATTACTAGAAACCAGAGCTTTGAAAGATAGTTAACCTAGATGAATAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAGAAACCAGAGCTTTGAAAGATAGTTAACCTAGATGAATAAAC  574

seq1  TTTTTCTTAACGTAAAGTGAACTGCTCTCTACTCATCTCAAATTCATACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAACGTAAAGTGAACTGCTCTCTACTCATCTCAAATTCATACA  624

seq1  CTGTGGCCTCTCTGTTGAAAAGCTACAGGAATTTAAACTAAAATTACAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCTCTCTGTTGAAAAGCTACAGGAATTTAAACTAAAATTACAGA  674

seq1  AGGGTCGCTCTGTCTCTGGCAATTGCATGAGCAGAGGTTGGTGGCTCTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCGCTCTGTCTCTGGCAATTGCATGAGCAGAGGTTGGTGGCTCTGT  724

seq1  ACAGAAGAGGGTTTTTAATGTAATGAAAATTCATACTAGTGCTTTGACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAGGGTTTTTAATGTAATGAAAATTCATACTAGTGCTTTGACTG  774

seq1  TCTCTTCTAACACACAAGCACTTAAATGCTTAAACCATAACCGGCCACTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTAACACACAAGCACTTAAATGCTTAAACCATAACCGGCCACTC  824

seq1  ATTAAATAGTACTTTTCATTTTCTTCTTTGGGTTATCACTCCTGAACAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAGTACTTTTCATTTTCTTCTTTGGGTTATCACTCCTGAACAAG  874

seq1  AAGAAAAATCTGAATCTTCCACACACAGCACCCAAAAAGCTTGCAGCCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATCTGAATCTTCCACACACAGCACCCAAAAAGCTTGCAGCCAG  924

seq1  CACAGGCCAAATAATTCAAATGCCAGAAAATCAAACTCACTCTTGAAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCAAATAATTCAAATGCCAGAAAATCAAACTCACTCTTGAAAAA  974

seq1  TCAAGATCAGCAGTGCTTCCCTCCAATCAAGTAACTCCACCTGGGCTCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCAGCAGTGCTTCCCTCCAATCAAGTAACTCCACCTGGGCTCAC  1024

seq1  TTTGTGTCGTGTTTTTGTGCTCAGTAACGACTTCTTGATGCATAATTCAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCGTGTTTTTGTGCTCAGTAACGACTTCTTGATGCATAATTCAC  1074

seq1  AATTCACATACTCTAACAGTTCATCCTTTTAAAGCGTTATAAGGAAATGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACATACTCTAACAGTTCATCCTTTTAAAGCGTTATAAGGAAATGG  1124

seq1  TTCAGGGAGAATTC  1161
      ||||||||||||||
seq2  TTCAGGGAGAATTC  1138