BAC Information

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BAC

Clone NameB6Ng01-170M20
Chromosome10 (Build37)8 (Build37)
Map Location 63,465,500 - 63,466,541108,835,628 - 108,835,718
singlet/doubletsingletsinglet
Overlap geneCtnna3, Lrrtm3
Upstream geneRufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170M20.bB6Ng01-170M20.g
ACCDH961423DH961424
length1,037624
definitionDH961423|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M20, 5' end.DH961424|Mus musculus domesticus DNA, BAC clone: B6Ng01-170M20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,465,500 - 63,466,541)(108,835,628 - 108,835,718)
sequence
gaattcagcagagcagtttttaaatgaaaattaatggtagagtttaatgt
acagtttctttactgctgatcaatgtgaaagaaactttatggcattggtt
tccttacaagtaggaaactcatttccttgagaaatgcatattcagaaggc
tgctcttcttgagaggtgatttggctgatatgttaagagcaacgagaagg
tacctcgtctttgcatgtccccccttttagttagagggtgagtgatcttc
caccaaagttccttgtatgacacaacactatctcttgctctcctgactag
tgttgttctttcaacattcaaattttactttaaatgtttgtaaatgaaat
tcattagatttgctagtagtatgtatacttaggaaatttgtaaatactaa
ttaatttatcttcataaaattcttggatctggattgccagatagtcattc
gtatttgggtgaaaataaggactatctcttacaactggcctggagtttca
aaatgtaggtaaggacaatagcttgtgggtgttccagaatccaggacctc
ataggattgaaatttttgttgtatgtttaaaaatgatccttttggtgagg
gttaaagaccaaaattagaaactaaacaattcttagtcatatgacaaaca
ggcagatatagaagattttcatctttctgataaaacatgcatatagtatt
gcatgggaggactgcatgtcttgtaatgtcagtcttctttcctaagaata
gcccctcttaaagaatatttattgaaaaatacatattaagaagctaaagg
tttaatatgacattgctttatgaaacatttttttgggggttaggaagagg
gttttcgttgttgttgttgttttttattgtttcttttttaaagccagtaa
tcataaaatctacttataactattcatacacctttcattcatggccatac
taatatagtcccagaatgatttttgcttcagaaagatgtacgatgaacct
tcagacatatcgcttcatgggggaacctgggtttatc
gaattctatctcagtgtgattgtccactgagagctgggatactcagacaa
gcattattctccatttctgcaagggggtttctagcttgattaatatttaa
attgctagactgagtgaaactgcacttctctgtgctgtgagtgggatcaa
gtccaatgcattgaagaacttacttgaagattaattaggatagatgtcgc
caaacttttgaactgtgagagtatagttgttgttgattatgatgatgttg
ttgttgttgttgttttctttgggttcagctaaaatacagctttctgagtc
gggagcttttcagcctttggaaagatattcaacagtttttttgattctga
aactttctgacagaaaccagactaccaccatccagtctcttctgagatct
gaactcactaacaaacctttcatttcctgagattagcttccatgagcaca
tacaccatttcctgttaacattaactttctgggctggagagatggctcag
aggttaagagcaccgactgctcttacagagaacctgagttcaattcccag
caaccacatggtggctcacaagcatctgtagtgggatctgatgtctgctt
ctggtatgtctgaggagagcaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63465500_63466541
seq2: B6Ng01-170M20.b_46_1082

seq1  GAATTCAGCAGAGCAGTTTTTAAATGAAAATTAATGGTAGAGTTTAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAGCAGTTTTTAAATGAAAATTAATGGTAGAGTTTAATGT  50

seq1  ACAGTTTCTTTACTGCTGATCAATGTGAAAGAAACTTTATGGCATTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTTTACTGCTGATCAATGTGAAAGAAACTTTATGGCATTGGTT  100

seq1  TCCTTACAAGTAGGAAACTCATTTCCTTGAGAAATGCATATTCAGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAAGTAGGAAACTCATTTCCTTGAGAAATGCATATTCAGAAGGC  150

seq1  TGCTCTTCTTGAGAGGTGATTTGGCTGATATGTTAAGAGCAACGAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTTGAGAGGTGATTTGGCTGATATGTTAAGAGCAACGAGAAGG  200

seq1  TACCTCGTCTTTGCATGTCCCCCCTTTTAGTTAGAGGGTGAGTGATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCGTCTTTGCATGTCCCCCCTTTTAGTTAGAGGGTGAGTGATCTTC  250

seq1  CACCAAAGTTCCTTGTATGACACAACACTATCTCTTGCTCTCCTGACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGTTCCTTGTATGACACAACACTATCTCTTGCTCTCCTGACTAG  300

seq1  TGTTGTTCTTTCAACATTCAAATTTTACTTTAAATGTTTGTAAATGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTTTCAACATTCAAATTTTACTTTAAATGTTTGTAAATGAAAT  350

seq1  TCATTAGATTTGCTAGTAGTATGTATACTTAGGAAATTTGTAAATACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGATTTGCTAGTAGTATGTATACTTAGGAAATTTGTAAATACTAA  400

seq1  TTAATTTATCTTCATAAAATTCTTGGATCTGGATTGCCAGATAGTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATCTTCATAAAATTCTTGGATCTGGATTGCCAGATAGTCATTC  450

seq1  GTATTTGGGTGAAAATAAGGACTATCTCTTACAACTGGCCTGGAGTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGGTGAAAATAAGGACTATCTCTTACAACTGGCCTGGAGTTTCA  500

seq1  AAATGTAGGTAAGGACAATAGCTTGTGGGTGTTCCAGAATCCAGGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGGTAAGGACAATAGCTTGTGGGTGTTCCAGAATCCAGGACCTC  550

seq1  ATAGGATTGAAATTTTTGTTGTATGTTTAAAAATGATCCTTTTGGTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTGAAATTTTTGTTGTATGTTTAAAAATGATCCTTTTGGTGAGG  600

seq1  GTTAAAGACCAAAATTAGAAACTAAACAATTCTTAGTCATATGACAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGACCAAAATTAGAAACTAAACAATTCTTAGTCATATGACAAACA  650

seq1  GGCAGATATAGAAGATTTTCATCTTTCTGATAAAACATGCATATAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATATAGAAGATTTTCATCTTTCTGATAAAACATGCATATAGTATT  700

seq1  GCATGGGAGGACTGCATGTCTTGTAATGTCAGTCTTCTTTCCTAAGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAGGACTGCATGTCTTGTAATGTCAGTCTTCTTTCCTAAGAATA  750

seq1  GCCCCTCTTAAAGAATATTTATTGAAAAATACATATTAAGAAGCTAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTTAAAGAATATTTATTGAAAAATACATATTAAGAAGCTAAAGG  800

seq1  TTTAATATGACATTGCTTTATGAAACATTTTTTTGGGGGTTAGGAAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATGACATTGCTTTATGAAACATTTTTTTGGGGGTTAGGAAGAGG  850

seq1  GTTTTCGTTGTTGTTGTTGTTTTTTATTGTTTTCTTTTTTTTAAAGCCAG  900
      |||||||||||||||||||||||||||||||   | ||||||||||||||
seq2  GTTTTCGTTGTTGTTGTTGTTTTTTATTGTT---TCTTTTTTAAAGCCAG  897

seq1  TAATCATAAAATCTACTTATAAACTAATCAAACACCTTTCATACATGACC  950
      |||||||||||||||||||| ||||| ||| ||||||||||| |||| ||
seq2  TAATCATAAAATCTACTTAT-AACTATTCATACACCTTTCATTCATGGCC  946

seq1  ATACTAAATATAGTCACAGAATGAATTTTGCTCTAG-AAGATGTTACGAT  999
      ||||| ||||||||| |||||||| |||||||  || |||||| ||||||
seq2  ATACT-AATATAGTCCCAGAATGATTTTTGCTTCAGAAAGATG-TACGAT  994

seq1  GAACTTTCAGACATTCCGCTTCATGGTGGAACCTGTGTTTATC  1042
      |||| |||||||||  |||||||||| |||||||| |||||||
seq2  GAACCTTCAGACATATCGCTTCATGGGGGAACCTGGGTTTATC  1037

seq1: chr8_108835628_108835718
seq2: B6Ng01-170M20.g_548_638 (reverse)

seq1  TTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACTTTTGGAAG  50
      |||||||||||||||||||||||||||||||||||||||   | || |||
seq2  TTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGTTCTCTGTAAG  50

seq1  AGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCC  91
      ||||||| |||||||||||| ||||||||||||||||||||
seq2  AGCAGTCGGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCC  91