BAC Information

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BAC

Clone NameB6Ng01-170O15
Chromosome10 (Build37)
Map Location 83,726,200 - 83,839,042
singlet/doubletdoublet
Overlap geneLOC432482, Nuak1
Upstream geneSlc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
Downstream geneCkap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170O15.bB6Ng01-170O15.g
ACCDH961509DH961510
length897991
definitionDH961509|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O15, 5' end.DH961510|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,838,441 - 83,839,042)(83,726,200 - 83,727,201)
sequence
gaattctttctctattgcctagccttctgtacttgatgcagatctggaat
gacagggaagtcagtagttccaggagatctctttatttgtgggaaagcag
atcgtggctggggagatagcacagatgatacaatgcttgccttgtaagag
tgaaaatatgggtttgattctaagaacgtacccagaaacacctggcatgg
taatactcatttatgaccccacagctgtctagttataaatgaatggagcc
caggactttgctggccagccagccaggcctactcagtgaggtcttgccag
tggaagaccctgtcttaaaagaaaaagtttgaggggagcttgagggagga
ttcctgaagttgttctgtgtcgcccacctacacacagatgtatatatgca
acagcaaacacacatgtgtacttgtgtgtaccacaaaaagaaggaaagca
aacaaggatggagcagctttgtggctcatggttctgagccttggtcaggt
ttttgctgtacagtctaaagacttccactttctgcttgagcatgaagctg
gaacactccaaatgcattctctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttcttccttccttccttccttccttc
cttcctctctctctctcttcctctttctttctttctttctttctttcttt
ctttctctctctctctctcttcctccctcttccttcctttctctctctct
cttcctctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttttacctgaagtaagcacatctctagccatttgtg
gaaagtcaaccccacccaaagctcccacgcagagcctgatctttttg
gaattctctagagaaacagaacatgaagactggatagatatgaaggggat
ttattgggatgacgtacaggctatggtccagcagtgaccatctaccaaga
gaaagtccaagaatttagtagttgttcaatccacaaggctggatgtctca
actggtgttcagtatatgtcagaactaggctctaattccagagaaagaac
agacttggcagagagagcaagcgggaaaacaagcatgcttctatgtttat
ataggtgaccagcagagagtgtggcccagattaaaggtatactttcccac
ttcaaaagatctggattaaaggtgtatcctcttacctcaaaagatctgga
ttaaaaatgaatcatcctatttcaaaagatataattaagaaaaaaattcc
tcacaggtatacctagctttatgggttttctcaattccagatgtagtcaa
gttgacaaccaagaagagctatcacaaatccacctgttgtcaacttgaca
cacaattgtatctccttttattatgattaacttccacatgaaaataataa
ccaggtcataatcacccctcacatgatatatcaagcccatgtacaatcat
agacacattatatatttaaccaggtcataattatgcctaacaaaactatc
cattgtacaaccagaaactcattgcccctgcccctgagggacattctttt
ttaatgatttgttgctggactgactgattgattgattttatgtgcattgg
tgttttgtctgcatgtatgcctatatgaaggtgtcagatcaccttctggt
gatctggaactgtattatagagagttgagagatgatgtgtggttccatgg
ttctttggaagagcagctagggctcttaactactgaggatttctccagcc
ccagcacattctttttctatctcaacttaagtgtgaattcttaattgatg
ttctagtacatcataaacagattagaagaaaacatatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_83838441_83839042
seq2: B6Ng01-170O15.b_47_648 (reverse)

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAATGCATTTGGAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAATGCATTTGGAGTGT  50

seq1  TCCAGCTTCATGCTCAAGCAGAAAGTGGAAGTCTTTAGACTGTACAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCATGCTCAAGCAGAAAGTGGAAGTCTTTAGACTGTACAGCAA  100

seq1  AAACCTGACCAAGGCTCAGAACCATGAGCCACAAAGCTGCTCCATCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGACCAAGGCTCAGAACCATGAGCCACAAAGCTGCTCCATCCTTG  150

seq1  TTTGCTTTCCTTCTTTTTGTGGTACACACAAGTACACATGTGTGTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCCTTCTTTTTGTGGTACACACAAGTACACATGTGTGTTTGCT  200

seq1  GTTGCATATATACATCTGTGTGTAGGTGGGCGACACAGAACAACTTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATATATACATCTGTGTGTAGGTGGGCGACACAGAACAACTTCAGG  250

seq1  AATCCTCCCTCAAGCTCCCCTCAAACTTTTTCTTTTAAGACAGGGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCCTCAAGCTCCCCTCAAACTTTTTCTTTTAAGACAGGGTCTTC  300

seq1  CACTGGCAAGACCTCACTGAGTAGGCCTGGCTGGCTGGCCAGCAAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAAGACCTCACTGAGTAGGCCTGGCTGGCTGGCCAGCAAAGTCC  350

seq1  TGGGCTCCATTCATTTATAACTAGACAGCTGTGGGGTCATAAATGAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCATTCATTTATAACTAGACAGCTGTGGGGTCATAAATGAGTAT  400

seq1  TACCATGCCAGGTGTTTCTGGGTACGTTCTTAGAATCAAACCCATATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCCAGGTGTTTCTGGGTACGTTCTTAGAATCAAACCCATATTTT  450

seq1  CACTCTTACAAGGCAAGCATTGTATCATCTGTGCTATCTCCCCAGCCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTACAAGGCAAGCATTGTATCATCTGTGCTATCTCCCCAGCCACG  500

seq1  ATCTGCTTTCCCACAAATAAAGAGATCTCCTGGAACTACTGACTTCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTTCCCACAAATAAAGAGATCTCCTGGAACTACTGACTTCCCTG  550

seq1  TCATTCCAGATCTGCATCAAGTACAGAAGGCTAGGCAATAGAGAAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCAGATCTGCATCAAGTACAGAAGGCTAGGCAATAGAGAAAGAAT  600

seq1  TC  602
      ||
seq2  TC  602

seq1: chr10_83726200_83727201
seq2: B6Ng01-170O15.g_71_1061

seq1  GAATTCTCTAGAGAAACAGAACATGAAGACTGGATAGATATGAAGGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAGAAACAGAACATGAAGACTGGATAGATATGAAGGGGAT  50

seq1  TTATTGGGATGACGTACAGGCTATGGTCCAGCAGTGACCATCTACCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGGATGACGTACAGGCTATGGTCCAGCAGTGACCATCTACCAAGA  100

seq1  GAAAGTCCAAGAATTTAGTAGTTGTTCAATCCACAAGGCTGGATGTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCAAGAATTTAGTAGTTGTTCAATCCACAAGGCTGGATGTCTCA  150

seq1  ACTGGTGTTCAGTATATGTCAGAACTAGGCTCTAATTCCAGAGAAAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTTCAGTATATGTCAGAACTAGGCTCTAATTCCAGAGAAAGAAC  200

seq1  AGACTTGGCAGAGAGAGCAAGCGGGAAAACAAGCATGCTTCTATGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGCAGAGAGAGCAAGCGGGAAAACAAGCATGCTTCTATGTTTAT  250

seq1  ATAGGTGACCAGCAGAGAGTGTGGCCCAGATTAAAGGTATACTTTCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGACCAGCAGAGAGTGTGGCCCAGATTAAAGGTATACTTTCCCAC  300

seq1  TTCAAAAGATCTGGATTAAAGGTGTATCCTCTTACCTCAAAAGATCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGATCTGGATTAAAGGTGTATCCTCTTACCTCAAAAGATCTGGA  350

seq1  TTAAAAATGAATCATCCTATTTCAAAAGATATAATTAAGAAAAAAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGAATCATCCTATTTCAAAAGATATAATTAAGAAAAAAATTCC  400

seq1  TCACAGGTATACCTAGCTTTATGGGTTTTCTCAATTCCAGATGTAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTATACCTAGCTTTATGGGTTTTCTCAATTCCAGATGTAGTCAA  450

seq1  GTTGACAACCAAGAAGAGCTATCACAAATCCACCTGTTGTCAACTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAACCAAGAAGAGCTATCACAAATCCACCTGTTGTCAACTTGACA  500

seq1  CACAATTGTATCTCCTTTTATTATGATTAACTTCCACATGAAAATAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTGTATCTCCTTTTATTATGATTAACTTCCACATGAAAATAATAA  550

seq1  CCAGGTCATAATCACCCCTCACATGATATATCAAGCCCATGTACAATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCATAATCACCCCTCACATGATATATCAAGCCCATGTACAATCAT  600

seq1  AGACACATTATATATTTAACCAGGTCATAATTATGCCTAACAAAACTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATTATATATTTAACCAGGTCATAATTATGCCTAACAAAACTATC  650

seq1  CATTGTACAACCAGAAACTCATTGCCCCTGCCCCTGAGGGACATTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACAACCAGAAACTCATTGCCCCTGCCCCTGAGGGACATTCTTTT  700

seq1  TTAATGATTTGTTGCTGGACTGACTGATTGATTGATTTTATGTGCATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATTTGTTGCTGGACTGACTGATTGATTGATTTTATGTGCATTGG  750

seq1  TGTTTTGTCTGCATGTATGCCTATATGAAGGTGTCAGATCACCTTCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTCTGCATGTATGCCTATATGAAGGTGTCAGATCACCTTCTGGT  800

seq1  GATCTGGAACTGTAATTATAGAGAGTTGAGAGATGATGTGTGGTTCCATG  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAACTGT-ATTATAGAGAGTTGAGAGATGATGTGTGGTTCCATG  849

seq1  GTTCTTTGGAAGAGCAGCTAGGGCTCTTAACTACTGAGGAATTTCTCCAG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTCTTTGGAAGAGCAGCTAGGGCTCTTAACTACTGAGG-ATTTCTCCAG  898

seq1  CCCCAAGGCACATTCTTTTCCTATCTCAAACTTAAGTGTGATATTCTTAA  950
      |||||  |||||||||||| ||||||| ||||||||||||| ||||||||
seq2  CCCCA--GCACATTCTTTTTCTATCTC-AACTTAAGTGTGA-ATTCTTAA  944

seq1  TTGATGTTCTAGTACATCATAAACAGATTAAGGAAAGAAAACACATATCT  1000
      ||||||||||||||||||||||||||||||    ||||||  ||||||||
seq2  TTGATGTTCTAGTACATCATAAACAGATTA---GAAGAAA--ACATATCT  989

seq1  GT  1002
      ||
seq2  GT  991