BAC Information

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BAC

Clone NameB6Ng01-171C07
Chromosome10 (Build37)
Map Location 119,376,382 - 119,581,456
singlet/doubletdoublet
Overlap geneGrip1, Helb, Irak3
Upstream geneLOC100042861, LOC674417, Cand1
Downstream geneTmbim4, 1190005P17Rik, Hmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171C07.bB6Ng01-171C07.g
ACCGA000103GA000104
length1,081693
definitionB6Ng01-171C07.b B6Ng01-171C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,376,382 - 119,377,417)(119,580,767 - 119,581,456)
sequence
gaattcattgtgtgtgctggctcagcagttatgacatttttttttctggt
tataaagtttctctggccaaaacctatgtttcagactcaacgatgggttc
caagatctggttacaaaccacaaccgttcttaaatttcttttaaaaataa
ttagataaatatagtaaaaactctccttataagaaatttagggtgaaatg
tggtgattctctttggcagtttaaccataagggaagtgcttttgaaacac
atgcagaaattcgaattgttgaaaaaacagcattggagactacttctgcc
atacatattcatgactaattaccacacggttaatcaataccaatcaaact
tctaatgtaagacttaagccaattacaatttctcattgcaaaataaagcg
actagatgcaactgaattccacatctttctccaggcacgtgatggtgtaa
tcttaccaaaatatccccttaacaattttcaggaatttcaaaagtttcta
aggctgaaatactagttgatacatgggagacacctcatgcaggaacggag
gagtgaataactcacttaatgttcttctattgaatttgcgtgattatagg
tgctattctaatgtctccagagtaaagactcagttttagccagtgactgc
cacatttgtatagacttttagaaattgcctcaatacactggttagaccta
aaggtttaccgttttacatttttaaaatcagttttgaagcccaccctgta
gaacatttctctgctctcctcaacctatccgtcaagggtcaggggctaat
ccaggtgacagtatgacgggtaaagagtagcacatgtgatattttttgga
cctagctgcaattttttaactcaactttgggttcagttgagaatacttga
taaaattcattgaaggaagtagacactgcaggacttgaacaggtccggtt
caatggctgggaggagtttctttgctctccacatggtttctccatgccga
acttttgtatacccaccagttggcgaattcttgtttcctaattgccctgg
aaaaaacaaagtcttgggttttccagaaaga
gaattccaggatgaccaggaagggtagagtcagaatagagttgggttgcc
agtctgtggcaaccagaagatccttactgaaggtgatggcttagctatga
tctgggaacaggtcagatatgggtaacagtaaggagagaggacatcctcc
gaagaggtgatcagcactcctgagggatgactcagaggtcacaagcctta
gctgtaagacctgggcagtcagcatcatggaggtgagccttagttgtaag
accctgggcagccagaatcatggaggtgagccttagctgtaagaccctag
gtagccagcatcatggaggtcagccttagctgtgagaccctgggcagcca
gcatcatggaggtcagccttagctttgagaccctgggcagccagaatcat
ggaggtgagtcttagttgtaagacctggacagccagcatcatggaggtga
gccttaactgtaagacctgggcaggcagcatcttggaggagagccttagc
tgtaagacaccgggcagccagcatcatggaggtgagccttagctgtaaga
cctggacagccagcatcattgaggtgagccttaactgtgagaccctggac
agccagcatcatggaggtgagccttagctgtaaagactctgggaagccag
catcatggaggagagcccttagttataaatccagcattcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_119376382_119377417
seq2: B6Ng01-171C07.b_44_1124

seq1  GAATTCATTGTGTGTGCTGGCTCAGCAGTTATGACATTTTTTTTTCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGTGTGCTGGCTCAGCAGTTATGACATTTTTTTTTCTGGT  50

seq1  TATAAAGTTTCTCTGGCCAAAACCTATGTTTCAGACTCAACGATGGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTTCTCTGGCCAAAACCTATGTTTCAGACTCAACGATGGGTTC  100

seq1  CAAGATCTGGTTACAAACCACAACCGTTCTTAAATTTCTTTTAAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTGGTTACAAACCACAACCGTTCTTAAATTTCTTTTAAAAATAA  150

seq1  TTAGATAAATATAGTAAAAACTCTCCTTATAAGAAATTTAGGGTGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAATATAGTAAAAACTCTCCTTATAAGAAATTTAGGGTGAAATG  200

seq1  TGGTGATTCTCTTTGGCAGTTTAACCATAAGGGAAGTGCTTTTGAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTCTCTTTGGCAGTTTAACCATAAGGGAAGTGCTTTTGAAACAC  250

seq1  ATGCAGAAATTCGAATTGTTGAAAAAACAGCATTGGAGACTACTTCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAATTCGAATTGTTGAAAAAACAGCATTGGAGACTACTTCTGCC  300

seq1  ATACATATTCATGACTAATTACCACACGGTTAATCAATACCAATCAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTCATGACTAATTACCACACGGTTAATCAATACCAATCAAACT  350

seq1  TCTAATGTAAGACTTAAGCCAATTACAATTTCTCATTGCAAAATAAAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTAAGACTTAAGCCAATTACAATTTCTCATTGCAAAATAAAGCG  400

seq1  ACTAGATGCAACTGAATTCCACATCTTTCTCCAGGCACGTGATGGTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATGCAACTGAATTCCACATCTTTCTCCAGGCACGTGATGGTGTAA  450

seq1  TCTTACCAAAATATCCCCTTAACAATTTTCAGGAATTTCAAAAGTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAAAATATCCCCTTAACAATTTTCAGGAATTTCAAAAGTTTCTA  500

seq1  AGGCTGAAATACTAGTTGATACATGGGAGACACCTCATGCAGGAACGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAATACTAGTTGATACATGGGAGACACCTCATGCAGGAACGGAG  550

seq1  GAGTGAATAACTCACTTAATGTTCTTCTATTGAATTTGCGTGATTATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATAACTCACTTAATGTTCTTCTATTGAATTTGCGTGATTATAGG  600

seq1  TGCTATTCTAATGTCTCCAGAGTAAAGACTCAGTTTTAGCCAGTGACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCTAATGTCTCCAGAGTAAAGACTCAGTTTTAGCCAGTGACTGC  650

seq1  CACATTTGTATAGAC-TTTAGAAATTGCCTCAATACACTGGTTAGACCTA  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACATTTGTATAGACTTTTAGAAATTGCCTCAATACACTGGTTAGACCTA  700

seq1  AAGGTTTACCGTTTTACA-TTTTAAAATCAG-TTTGAAGCCCA-CCTGTA  746
      |||||||||||||||||| |||||||||||| ||||||||||| ||||||
seq2  AAGGTTTACCGTTTTACATTTTTAAAATCAGTTTTGAAGCCCACCCTGTA  750

seq1  GAACATTTCTCTGCTCTCCTCAACCTATCCGTCAA-GGTCAGGGGCTAAT  795
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAACATTTCTCTGCTCTCCTCAACCTATCCGTCAAGGGTCAGGGGCTAAT  800

seq1  CCAGGTGACAGTATGACGGGTAAAGAGTAGCACATGTGATA-TTTTTGGA  844
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAGGTGACAGTATGACGGGTAAAGAGTAGCACATGTGATATTTTTTGGA  850

seq1  CCTAGCTGCAA-TTTTTAACTCAACTT--GGATCAG-TGAGAATAC-TGA  889
      ||||||||||| |||||||||||||||  || |||| ||||||||| |||
seq2  CCTAGCTGCAATTTTTTAACTCAACTTTGGGTTCAGTTGAGAATACTTGA  900

seq1  TAAA--TCA-TGAAGGAAGTAGACACTGCA-GAC-TGAACAGGTCC-GTT  933
      ||||  ||| |||||||||||||||||||| ||| ||||||||||| |||
seq2  TAAAATTCATTGAAGGAAGTAGACACTGCAGGACTTGAACAGGTCCGGTT  950

seq1  CAGT-GCTGG--AGAGTTTC-TTGCT---CACATG--TTCT-CATGC--G  971
      || | |||||   ||||||| |||||   ||||||  |||| |||||   
seq2  CAATGGCTGGGAGGAGTTTCTTTGCTCTCCACATGGTTTCTCCATGCCGA  1000

seq1  ACTT---TGTAGCCA-CAGTT-GCG-ATTC-TGTTT-CTAAT---GCTTG  1010
      ||||   | || ||| ||||| ||| |||| ||||| |||||    || |
seq2  ACTTTTGTATACCCACCAGTTGGCGAATTCTTGTTTCCTAATTGCCCTGG  1050

seq1  --AAAACAAAGTCTTGG---TTCCAGAAAGA  1036
        |||||||||||||||   |||||||||||
seq2  AAAAAACAAAGTCTTGGGTTTTCCAGAAAGA  1081

seq1: chr10_119580767_119581456
seq2: B6Ng01-171C07.g_69_761 (reverse)

seq1  ACATG-ATGCTGGATTTATAACTAA-GGCTCTCCTCCATGATGCTGGCTT  48
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACATGAATGCTGGATTTATAACTAAGGGCTCTCCTCCATGATGCTGGCTT  50

seq1  CCCAGAGTC-TTACAGCTAAGGCTCACCTCCATGATGCTGGCTGTCCAGG  97
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTCTTTACAGCTAAGGCTCACCTCCATGATGCTGGCTGTCCAGG  100

seq1  GTCTCACAGTTAAGGCTCACCTCAATGATGCTGGCTGTCCAGGTCTTACA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACAGTTAAGGCTCACCTCAATGATGCTGGCTGTCCAGGTCTTACA  150

seq1  GCTAAGGCTCACCTCCATGATGCTGGCTGCCCGGTGTCTTACAGCTAAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCTCACCTCCATGATGCTGGCTGCCCGGTGTCTTACAGCTAAGG  200

seq1  CTCTCCTCCATGATGCTGCCTGCCCAGGTCTTACAGTTAAGGCTCACCTC  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCAAGATGCTGCCTGCCCAGGTCTTACAGTTAAGGCTCACCTC  250

seq1  CATGATGCTGGCTGTCCAGGTCTTACAACTAAGACTCACCTCCATGATTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCTGGCTGTCCAGGTCTTACAACTAAGACTCACCTCCATGATTC  300

seq1  TGGCTGCCCAGGGTCTCAAAGCTAAGGCTGACCTCCATGATGCTGGCTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCCAGGGTCTCAAAGCTAAGGCTGACCTCCATGATGCTGGCTGC  350

seq1  CCAGGGTCTCACAGCTAAGGCTGACCTCCATGATGCTGGCTACCTAGGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTCACAGCTAAGGCTGACCTCCATGATGCTGGCTACCTAGGGT  400

seq1  CTTACAGCTAAGGCTCACCTCCATGATTCTGGCTGCCCAGGGTCTTACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGCTAAGGCTCACCTCCATGATTCTGGCTGCCCAGGGTCTTACAA  450

seq1  CTAAGGCTCACCTCCATGATGCTGACTGCCCAGGTCTTACAGCTAAGGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTCACCTCCATGATGCTGACTGCCCAGGTCTTACAGCTAAGGCT  500

seq1  TGTGACCTCTGAGTCATCCCTCAGGAGTGCTGATCACCTCTTCGGAGGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTCTGAGTCATCCCTCAGGAGTGCTGATCACCTCTTCGGAGGAT  550

seq1  GTCCTCTCTCCTTACTGTTACCCATATCTGACCTGTTCCCAGATCATAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCTCCTTACTGTTACCCATATCTGACCTGTTCCCAGATCATAGC  600

seq1  TAAGCCATCACCTTCAGTAAGGATCTTCTGGTTGCCACAGACTGGCAACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATCACCTTCAGTAAGGATCTTCTGGTTGCCACAGACTGGCAACC  650

seq1  CAACTCTATTCTGACTCTACCCTTCCTGGTCATCCTGGAATTC  690
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTATTCTGACTCTACCCTTCCTGGTCATCCTGGAATTC  693