BAC Information

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BAC

Clone NameB6Ng01-172C01
Chromosome10 (Build37)
Map Location 47,862,226 - 47,863,335
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668252, LOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172C01.bB6Ng01-172C01.g
ACCGA000828GA000829
length1,1361,198
definitionB6Ng01-172C01.b B6Ng01-172C01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagaagtgcttgctgacaggaacctggaaacaaaaataataac
ctgtccactgggaaggtctgccacagcctgaccaataacagattcggatg
ctagcagccaaccattggtctgagcatggagaccacaatggaagtgttaa
ggcaaagactgaaggagatgaagtggtttacaaccccatatgaagaacaa
tttcaaccaaccagaccctccagagctcccagggccccaaatagagtaca
aacaaagggacccatggctctacctgcagagaattgccttatctggaatc
agttggaggggaggcccttggtcctgtggaggctcgatgcttcaaagtag
gggaattctacagcagtgaggctggagaagatgtgtgcagggggcaccct
attagaagcagggggaggggaaatgacatagggggtttgcagagggtaaa
ctgggaatgggtataatatttgaaatgtaaataaataaataaataaataa
ataaataaataaataaataaatggatataaaataatatgtcaggaagaaa
gaaggcatacaaagatagctcaacattgcattttatagtcctacaaactg
tagaaagttaggatccattacagctagaagacacaaagtttcttcccaaa
gatataaatattcctccggtcctttggatttggatttatgagctctgaat
catctaaagagtagtggtccattgttttaaggttgatgtcatctcctttg
tttctgtgactcttgcttacactgataaagttctctatggacttccccat
tgtttttggatctactgaggatgcgcttcttattggttttacagaaactt
tatatctgtttgtggactttgctcactgacatgtaagtctcagtaagttt
catatctttttattgctttaatctaaatttaccttctttcatattaatct
ttttgcccttatttaattttatatttgtgcattttatatactactccagt
aattaaagcagtttatccctttagtgtacagatgctttttctgattaatt
tccttggagggtggaatccaaattggatgttatgattttccttttattaa
aaatagggtttttcctcttggcatgcttgaattaca

gaattccctagtagaaatgttggagttattgtgtatagtattgtaacatc
tgaaaatatcaacactttgacttctcctccaaattttagatgcttgaact
cattcagctgccttattgccaatgctaaaacttcaagtactatattaact
cgatatacctttatgtccctgattttaattgaattgctttgagtttctga
gcatttaatttaatgtcgactacacacttgatgtaaattgcctttattat
gtttagatctgtctcttgtctctaagacttttattatgaaaggatgttga
tcttggctgaggcatttttatcttataatgaaataatcatatttaggtct
ttctttctttccttttttttaatatgttgaattatattgactcatttttc
aagttgtatcactgggttgaggcatatttgatcatggagaattatatttt
taatgtgttcttggattcagtttgtcagtattttgttgagttttttgcat
caatattcatgaggaaaattattcccacaaagaaaaagaacttcagaacg
actactcttatgaatactgatgcaaaaatactcaataagctactcacaaa
atgaatctagaaacacatctaaaatattatccaccctgatcaaggagccc
taatcccaggtatacagggatggttcaatatatgaaaatctagcaatgta
atccactataaacaaactaaaaaatttttaaaaaatctcacaatcaactc
attgcatgctgaaaaaactttgacaaattcactcctgtgcatatatccaa
aaaagcttctactcgtccacaaacataattgcacagctatgttcatggca
agtttatctgtaatagccacaaactggaaacaacctagatgcctctcagt
ttaaaattacataaagaaagggtggaacttctacacatggaatactattc
agctatttaaacaaagacatcatgatctgccatcaatagaaggattcttg
agaaatcattttgagtgagatactcattccaaagacatggatggtgtgta
cctcccttatattggataataagtcataaaaatacagatacctcttgcta
tactccaccgaccagagtactaacgaaggcatagtagatgcctggactca
tggaaggggaatgatatgttccaagaaggccagtggtgatatagggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_47862226_47863335
seq2: B6Ng01-172C01.b_73_1179

seq1  CCTGGAAACAAAAATAATAACCTGTCCACTGGGAAGGTCTGCCACAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAACAAAAATAATAACCTGTCCACTGGGAAGGTCTGCCACAGCCT  50

seq1  GACCAATAACAGATTCGGATGCTAGCAGCCAACCATTGGTCTGAGCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATAACAGATTCGGATGCTAGCAGCCAACCATTGGTCTGAGCATGG  100

seq1  AGACCACAATGGAAGTGTTAAGGCAAAGACTGAAGGAGATGAAGTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACAATGGAAGTGTTAAGGCAAAGACTGAAGGAGATGAAGTGGTTT  150

seq1  ACAACCCCATATGAAGAACAATTTCAACCAACCAGACCCTCCAGAGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCCATATGAAGAACAATTTCAACCAACCAGACCCTCCAGAGCTCC  200

seq1  CAGGGCCCCAAATAGAGTACAAACAAAGGGACCCATGGCTCTACCTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCCAAATAGAGTACAAACAAAGGGACCCATGGCTCTACCTGCAG  250

seq1  AGAATTGCCTTATCTGGAATCAGTTGGAGGGGAGGCCCTTGGTCCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGCCTTATCTGGAATCAGTTGGAGGGGAGGCCCTTGGTCCTGTGG  300

seq1  AGGCTCGATGCTTCAAAGTAGGGGAATTCTACAGCAGTGAGGCTGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGATGCTTCAAAGTAGGGGAATTCTACAGCAGTGAGGCTGGAGAA  350

seq1  GATGTGTGCAGGGGGCACCCTATTAGAAGCAGGGGGAGGGGAAATGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGCAGGGGGCACCCTATTAGAAGCAGGGGGAGGGGAAATGACAT  400

seq1  AGGGGGTTTGCAGAGGGTAAACTGGGAATGGGTATAATATTTGAAATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTTGCAGAGGGTAAACTGGGAATGGGTATAATATTTGAAATGTA  450

seq1  AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGGATATA  500

seq1  AAATAATATGTCAGGAAGAAAGAAGGCATACAAAGATAGCTCAACATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATGTCAGGAAGAAAGAAGGCATACAAAGATAGCTCAACATTGC  550

seq1  ATTTTATAGTCCTACAAACTGTAGAAAGTTAGGATCCATTACAGCTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGTCCTACAAACTGTAGAAAGTTAGGATCCATTACAGCTAGAA  600

seq1  GACACAAAGTTTCTTCCCAAAGATATAAATATTCCTCCGGTCCTTTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAAGTTTCTTCCCAAAGATATAAATATTCCTCCGGTCCTTTGGAT  650

seq1  TTGGATTTATGAGCTCTGAATCATCTAAAGAGTAGTGGTCCATTGTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTATGAGCTCTGAATCATCTAAAGAGTAGTGGTCCATTGTTTTA  700

seq1  AGGTTGATGTCATCTCCTTTGTTTCTGTGACTCTTGCTTACACTGATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATGTCATCTCCTTTGTTTCTGTGACTCTTGCTTACACTGATAAA  750

seq1  GTTCTCTATGGACTTCCCCATTGTTTTTGGATCTACTGAGGATGCGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTATGGACTTCCCCATTGTTTTTGGATCTACTGAGGATGCGCTTC  800

seq1  TTATTGGTTTTACAGAAACTTTATATCTGTTTGTGGAC-TTGCTCACTGA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTATTGGTTTTACAGAAACTTTATATCTGTTTGTGGACTTTGCTCACTGA  850

seq1  CATGTAAGTCTCAGTAAGTTTCAATATC-TTTTATTGCTTTAATCTAAAT  898
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  CATGTAAGTCTCAGTAAGTTTC-ATATCTTTTTATTGCTTTAATCTAAAT  899

seq1  TTACCTTCTTTCAATATTAATCTTTTTGCCCTTATTTAATTTTAATATTT  948
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TTACCTTCTTTC-ATATTAATCTTTTTGCCCTTATTTAATTTT-ATATTT  947

seq1  GTGCATTTTATATTACTACT-CAGTAATTAAAGCAGTTTTATTCCTTTAG  997
      |||||||||||| ||||||| ||||||||||||||| ||||| |||||||
seq2  GTGCATTTTATA-TACTACTCCAGTAATTAAAGCAG-TTTATCCCTTTAG  995

seq1  TGTACAGATGCTTTTTCTGATTATTTTCCTTGAAGGTTGGATTCCCAAAT  1047
      ||||||||||||||||||||||| |||||||| ||| |||| | ||||||
seq2  TGTACAGATGCTTTTTCTGATTAATTTCCTTGGAGGGTGGAAT-CCAAAT  1044

seq1  TGAATGTTTATGATTTTTCTTTTATTAAAAATA-GGTTTTTCTCTTTGGC  1096
      || ||| |||||||||| ||||||||||||||| ||||||||   |||||
seq2  TGGATG-TTATGATTTTCCTTTTATTAAAAATAGGGTTTTTCCTCTTGGC  1093

seq1  ATGTCTTG-ATTACA  1110
      ||| |||| ||||||
seq2  ATG-CTTGAATTACA  1107


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