BAC Information

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BAC

Clone NameB6Ng01-172E20
Chromosome10 (Build37)
Map Location 56,151,391 - 56,194,141
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
Downstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172E20.bB6Ng01-172E20.g
ACCGA000956GA000957
length1,1161,175
definitionB6Ng01-172E20.b B6Ng01-172E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,193,047 - 56,194,141)(56,151,391 - 56,152,551)
sequence
gaattcttcatagattttgtaattgctgtgcttcagcttctcctcaaatt
gagattagagtaccactcacttcccactgttgccttaggtattgaaggag
ttaatttgatatagttctaattgagattagagtacctgcccctttgggag
gtacttgggttaatttgataccatcctgagaacaggctggcactcttaat
ggaggacctataactactccgttaataactaaagcaagttcagactctag
atacaaagcaacatcgtactctaccaggaaaagctggacaccacagaagc
aaatgataaccagtccaatctttataatcacttctttaaaaaaaaaatta
agcaattgctaagcactgtggcatatacctttaatcccagaacccaggag
gcagagacaggtgagttctaggccagtatcatctatgtagtaaattctag
ggcagccaagtctatgtattagaaccttgtcttgaaaatacaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagctattttgcacttgtaat
aaaaatatttaatttctctttcacccgtcatggtcactatgatccattat
atataatattagcctatacctctacccctgccttttttttccccctagct
tttgacacagaatctcatgtatcccagactggcttccaatgttgctaagg
atgaccttgaattcgtgtatctctccactcgatcatgctgactgtggtca
tgctttaccacgcccagcttcagaatcccttttctacctgttccaaaggt
ataaacttttaatggaaccaatacaagggtttttgttggtttgttttttt
tttttaagacaaaaattttttaaattccaagaaaataaaatgcaaggaca
caatgcccatttccttttggtcgtctttttctccttgctgaacctaagtg
ttattgttgccaatgaactttttgagcccctggatataaaaaggcagctg
tgtccacagcccctctaccttgagtacatttttattgttactatttacaa
gcaaaaacatcattatcagagaaattatttcaaaagccatactgctaact
actagtttggtatact

gaattctgcgaatgaaggcagggctgcgaatgaaggcagggaggtggcaa
gagactccgtgaaggagagattgtctgacagtgagggtggcatcaaaggg
ccaggactgggcaactcatggtgacaaacagaggagaggagcagctgcct
ctctggggctgtagcacaggctaaggaaggagagaggaaaataagagttg
ggagggcttgttcccagttcagacagagcgaatgcatgtggaaggttgct
ctgcaggcgtttcgctcggttgtctggggttgcgattaacatgctcggtg
gatccaaacattccaggggaaatagcggcagcctgcagtaatttgaaagt
ctgcctttaggctgtaacttgaaactgcgtttcggtggtttgagacagtc
tgcagctggcctgggaggcagaccccagaaaaaacaggagctggtagtag
gcgcggactctggctagtctgggttagcctgaagagatgacccaccggaa
tcaggacacgaaaggttcacatcagacgttaaagagcatttctgaatcat
caggaccccgaaggagtcccagaaacagccagtctaacaagcaaaccagg
taccacacgtagaacacgttgatttacgtttgagaagatgcccttctcag
gatggcgaagccctgcttcagtagctacttctggataagacaaagctaca
gcggctaagctcagctgtgattgatagccatattccttccaagtgtttgc
acttgaaagctgtagtgttctgatgcgaaggataactttaatccttggcc
acattttcatataactatcaagatattatattattccctgactagtatta
cattttacccgttagaggggaattgtgcaagggaagttaatcaccaacaa
ggaacattcccttgttatcaacaggaggagattcctttccagggcgtgtg
agggtgttgttgtgtgtatacattcttcatttggcctttcttcagggatt
ttggctgttctcgaagagcaatgattttgatttaacggtcggcgatggtg
aagagtcaccaaaatatttaagggaggctatctagggctcatttaggatt
ttatacacctcctgccggaacctcagggtcaagttggctcaagctgtcac
tcgaacctgcctccttaggagagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56193047_56194141
seq2: B6Ng01-172E20.b_46_1161 (reverse)

seq1  AGTATA-CAAACTAGTATGTAGCAGTTATGCTTTTG-AATAATATCTCTG  48
      |||||| ||||||||||  |||||||   ||||||| |||||| ||||||
seq2  AGTATACCAAACTAGTAGTTAGCAGTATGGCTTTTGAAATAATTTCTCTG  50

seq1  ATAATTGATG-TTTTGCTTGTAAAATAGT-ACAAT-AAAATGTACTC-AG  94
      |||| ||||| |||||||||| ||||||| ||||| ||||||||||| ||
seq2  ATAA-TGATGTTTTTGCTTGT-AAATAGTAACAATAAAAATGTACTCAAG  98

seq1  GTAGAGGGGCTGTGGACCACAGCTGCC-TTTTATATCCA-GGGCTC-AAA  141
      |||||||||||||||| |||||||||| ||||||||||| |||||| |||
seq2  GTAGAGGGGCTGTGGA-CACAGCTGCCTTTTTATATCCAGGGGCTCAAAA  147

seq1  AGTTCATTG--CACAATAACAC-TAAGTTCAGC-AGGAG-AAAAGACGAC  186
      |||||||||   |||||||||| || ||||||| ||||| ||||||||||
seq2  AGTTCATTGGCAACAATAACACTTAGGTTCAGCAAGGAGAAAAAGACGAC  197

seq1  CAAAAGGAA--TGGCATTGTTGTCC-TGCATTT--ATTTCTT-GAATTTA  230
      |||||||||   ||||||| ||||| |||||||   |||||| |||||||
seq2  CAAAAGGAAATGGGCATTG-TGTCCTTGCATTTTATTTTCTTGGAATTTA  246

seq1  AAAA--TTTTGTC-TAAAAAAAAAAAACAAACCAACAAAAA-CCTTGTAT  276
      ||||  ||||||| ||||||||||||||||||||||||||| ||||||||
seq2  AAAAATTTTTGTCTTAAAAAAAAAAAACAAACCAACAAAAACCCTTGTAT  296

seq1  TGGTTCCATTAAAAGTTTATACCTTTGGAACAGGTAG-AAAGGGATTCTG  325
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTTCCATTAAAAGTTTATACCTTTGGAACAGGTAGAAAAGGGATTCTG  346

seq1  AAGCTGGGCGTGGTAAAGCATGACCACAGTCAGCATGATCGAGTGGAGAG  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGCGTGGTAAAGCATGACCACAGTCAGCATGATCGAGTGGAGAG  396

seq1  ATACACGAATTCAAGGTCATCCTTAGCAACATTGGAAGCCAGTCTGGGAT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGAATTCAAGGTCATCCTTAGCAACATTGGAAGCCAGTCTGGGAT  446

seq1  ACATGAGATTCTGTGTCAAAAGCTAGGGGGAAAAAAAAGGCAGGGGTAGA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGATTCTGTGTCAAAAGCTAGGGGGAAAAAAAAGGCAGGGGTAGA  496

seq1  GGTATAGGCTAATATTATATATAATGGATCATAGTGACCATGACGGGTGA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGGCTAATATTATATATAATGGATCATAGTGACCATGACGGGTGA  546

seq1  AAGAGAAATTAAATATTTTTATTACAAGTGCAAAATAGCTTTTTTTTTTT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATTAAATATTTTTATTACAAGTGCAAAATAGCTTTTTTTTTTT  596

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTTTCAAGACAAGGTTCT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTTTCAAGACAAGGTTCT  646

seq1  AATACATAGACTTGGCTGCCCTAGAATTTACTACATAGATGATACTGGCC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGACTTGGCTGCCCTAGAATTTACTACATAGATGATACTGGCC  696

seq1  TAGAACTCACCTGTCTCTGCCTCCTGGGTTCTGGGATTAAAGGTATATGC  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCACCTGTCTCTGCCTCCTGGGTTCTGGGATTAAAGGTATATGC  746

seq1  CACAGTGCTTAGCAATTGCTTAATTTTTTTTTTAAAGAAGTGATTATAAA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCTTAGCAATTGCTTAATTTTTTTTTTAAAGAAGTGATTATAAA  796

seq1  GATTGGACTGGTTATCATTTGCTTCTGTGGTGTCCAGCTTTTCCTGGTAG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGACTGGTTATCATTTGCTTCTGTGGTGTCCAGCTTTTCCTGGTAG  846

seq1  AGTACGATGTTGCTTTGTATCTAGAGTCTGAACTTGCTTTAGTTATTAAC  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGATGTTGCTTTGTATCTAGAGTCTGAACTTGCTTTAGTTATTAAC  896

seq1  GGAGTAGTTATAGGTCCTCCATTAAGAGTGCCAGCCTGTTCTCAGGATGG  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGTTATAGGTCCTCCATTAAGAGTGCCAGCCTGTTCTCAGGATGG  946

seq1  TATCAAATTAACCCAAGTACCTCCCAAAGGGGCAGGTACTCTAATCTCAA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATTAACCCAAGTACCTCCCAAAGGGGCAGGTACTCTAATCTCAA  996

seq1  TTAGAACTATATCAAATTAACTCCTTCAATACCTAAGGCAACAGTGGGAA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTATATCAAATTAACTCCTTCAATACCTAAGGCAACAGTGGGAA  1046

seq1  GTGAGTGGTACTCTAATCTCAATTTGAGGAGAAGCTGAAGCACAGCAATT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGTACTCTAATCTCAATTTGAGGAGAAGCTGAAGCACAGCAATT  1096

seq1  ACAAAATCTATGAAGAATTC  1095
      ||||||||||||||||||||
seq2  ACAAAATCTATGAAGAATTC  1116


seq1: chr10_56151391_56152551
seq2: B6Ng01-172E20.g_64_1238

seq1  GAATTCTGCGAATGAAGGCAGGGCTGCGAATGAAGGCAGGGAGGTGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCGAATGAAGGCAGGGCTGCGAATGAAGGCAGGGAGGTGGCAA  50

seq1  GAGACTCCGTGAAGGAGAGATTGTCTGACAGTGAGGGTGGCATCAAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCGTGAAGGAGAGATTGTCTGACAGTGAGGGTGGCATCAAAGGG  100

seq1  CCAGGACTGGGCAACTCATGGTGACAAACAGAGGAGAGGAGCAGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTGGGCAACTCATGGTGACAAACAGAGGAGAGGAGCAGCTGCCT  150

seq1  CTCTGGGGCTGTAGCACAGGCTAAGGAAGGAGAGAGGAAAATAAGAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGCTGTAGCACAGGCTAAGGAAGGAGAGAGGAAAATAAGAGTTG  200

seq1  GGAGGGCTTGTTCCCAGTTCAGACAGAGCGAATGCATGTGGAAGGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTTGTTCCCAGTTCAGACAGAGCGAATGCATGTGGAAGGTTGCT  250

seq1  CTGCAGGCGTTTCGCTCGGTTGTCTGGGGTTGCGATTAACATGCTCGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCGTTTCGCTCGGTTGTCTGGGGTTGCGATTAACATGCTCGGTG  300

seq1  GATCCAAACATTCCAGGGGAAATAGCGGCAGCCTGCAGTAATTTGAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAACATTCCAGGGGAAATAGCGGCAGCCTGCAGTAATTTGAAAGT  350

seq1  CTGCCTTTAGGCTGTAACTTGAAACTGCGTTTCGGTGGTTTGAGACAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTAGGCTGTAACTTGAAACTGCGTTTCGGTGGTTTGAGACAGTC  400

seq1  TGCAGCTGGCCTGGGAGGCAGACCCCAGAAAAAACAGGAGCTGGTAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGGCCTGGGAGGCAGACCCCAGAAAAAACAGGAGCTGGTAGTAG  450

seq1  GCGCGGACTCTGGCTAGTCTGGGTTAGCCTGAAGAGATGACCCACCGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGGACTCTGGCTAGTCTGGGTTAGCCTGAAGAGATGACCCACCGGAA  500

seq1  TCAGGACACGAAAGGTTCACATCAGACGTTAAAGAGCATTTCTGAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACACGAAAGGTTCACATCAGACGTTAAAGAGCATTTCTGAATCAT  550

seq1  CAGGACCCCGAAGGAGTCCCAGAAACAGCCAGTCTAACAAGCAAACCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCCGAAGGAGTCCCAGAAACAGCCAGTCTAACAAGCAAACCAGG  600

seq1  TACCACACGTAGAACACGTTGATTTACGTTTGAGAAGATGCCCTTCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACGTAGAACACGTTGATTTACGTTTGAGAAGATGCCCTTCTCAG  650

seq1  GATGGCGAAGCCCTGCTTCAGTAGCTACTTCTGGATAAGACAAAGCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGAAGCCCTGCTTCAGTAGCTACTTCTGGATAAGACAAAGCTACA  700

seq1  GCGGCTAAGCTCAGCTGTGATTGATAGCCATATTCCTTCCAAGTGTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTAAGCTCAGCTGTGATTGATAGCCATATTCCTTCCAAGTGTTTGC  750

seq1  ACTTGAAAGCTGTAGTGTTCTGATGCGAAGGATAACTTTAATCCTTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAGCTGTAGTGTTCTGATGCGAAGGATAACTTTAATCCTTGGCC  800

seq1  ACATTTTCATATAACTATCAAGATATTATATTATTCCCTGACTAGTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCATATAACTATCAAGATATTATATTATTCCCTGACTAGTATTA  850

seq1  CATTTTACCCGTTAGA-GGGAATTGTGC-AGGGAAGTTAATCACCAACAA  898
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  CATTTTACCCGTTAGAGGGGAATTGTGCAAGGGAAGTTAATCACCAACAA  900

seq1  GGAACATTCCCTTGTTATCAACAGGAGGAGATTCC-TTCCAGGGCGTGTG  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAACATTCCCTTGTTATCAACAGGAGGAGATTCCTTTCCAGGGCGTGTG  950

seq1  AGGGTGT--GTGTGTGTATACATTCTTCATTTTGCCTTCCTTCA-GGATT  994
      |||||||   |||||||||||||||||||||| ||||| ||||| |||||
seq2  AGGGTGTTGTTGTGTGTATACATTCTTCATTTGGCCTTTCTTCAGGGATT  1000

seq1  TT-GCTGTTCTCGAAGAGCAAATGATTTTGATTTAAC-GTCGGCGAT-GT  1041
      || |||||||||||||||| ||||||||||||||||| ||||||||| ||
seq2  TTGGCTGTTCTCGAAGAGC-AATGATTTTGATTTAACGGTCGGCGATGGT  1049

seq1  G-AGAGTCACCCAAAAATTATTTAGGGA-GCTATCTA-GGCTCATTTTAA  1088
      | |||||||||  |||||  || ||||| |||||||| |||||| |||| 
seq2  GAAGAGTCACC--AAAATATTTAAGGGAGGCTATCTAGGGCTCA-TTTAG  1096

seq1  GATTTTATACA-CTCTTTCCAG-ACCTCA-GGTC-AGTTTGCTC-AGCTG  1133
      ||||||||||| ||| | || | |||||| |||| |||| |||| |||||
seq2  GATTTTATACACCTCCTGCCGGAACCTCAGGGTCAAGTTGGCTCAAGCTG  1146

seq1  TCACTCAGAACCTG-CTCCTTA-GAGAGCA  1161
      |||||| ||||||| ||||||| |||||||
seq2  TCACTC-GAACCTGCCTCCTTAGGAGAGCA  1175


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