BAC Information

Click to search

BAC

Clone NameB6Ng01-173E02
Chromosome10 (Build37)
Map Location 49,508,751 - 49,632,805
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041689, Grik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173E02.bB6Ng01-173E02.g
ACCGA001651GA001652
length1,1221,117
definitionB6Ng01-173E02.b B6Ng01-173E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,631,692 - 49,632,805)(49,508,751 - 49,509,858)
sequence
gaattcattttctagactcaatagaagcattaactcatgacagcaatagt
tatctgcatttgcccaacacaaaattggccctattaccagccagtgatgg
aaaggatagcaatcacaagactctaccctttatcattaacatattgatta
tgggaaagtggaatcaatttcaatgtttttagttgtatactcactgacaa
gatccagtgttccactgaatagctccaaatccaagattaagcagataaat
gtagctaaattcaatgggtcacaggacaaaatgatacaattaaatggacc
tgagatacctgtgaatgaagaacacttgaacagtggtgatagagttgggc
ctgagattgtctatagtatgcattgtatacatgtaactaaaataaaccaa
tttaataaactaaaatgatggagccagctgagaaccatcattcatctcac
tttgcttccaattccatccaattgtaagaaaaatcctgttgctacagctg
tgaactgtcagtcctttttatgatgggccatgaaccaaaacaagtctttt
ctcactttagttgtcatgtacttgctcagaaaaataagaatatcaactaa
tacaaggatcacactctaattttctttttttttttactctaatttgccgt
ttttccctctatatttagaattcatagtaaagtgaataacacttggtaaa
agtcttcatccttcttatttttgaaaagcctttcttggaaagtaagtttt
caggtttcaccactttcatgtaacttgaaagatttgtataattattattt
atcaccctgaaatataatccctggacttataattttctgagagtattatg
gtgtttgtcaaatccattttctgtgattcttttttccactttatttccta
aatggaataagctacattaaattgcggatattaaaccatcctagccatat
aagttcctgtaataataaattattacacgggttttatcaaataatgcgtt
ttgcatgcttagttcagccattaggtattactctggtatcttttattctg
ggcatcctttattttgaatttggaaatttaaagtattacaaactcataga
attaattataaaattctttatt

gaattccgggtactgaccacctagtgcttccggaaccctcggccctgatt
tcgtctcctgcaagcaagcacatccacatccaggcataggggaacaggga
cagagatgctctgaatgacagtgggtaaggcaaaagggacaaggattgat
tttgcctgctctgagaagctacactgagtataaggactcatagcttctgc
ttctgggtggctgcttttttgctgctcctgaaaccatggcaacgagactt
ctatgttgccagcatctggggagcagctggttgtctccaaagtgaccctt
ttggttcaactactgcatttcccattcaggttggtgaggatcatcttggt
ttctgcatcttctacttctatcctgcttctcaagctagatgggttttggt
ctctcctggtgtccagtagcaaaagaaatggactttcaacatcaagaagc
tggcaggaaatctcagcacaggtctagcccctttatatctgattttgttc
ttcaagctaggtccctgaactctgagggaatttgaggcctggcaagcaca
gaacctggagtcctagctgtcatggttgggaaaatgagcatatagaagta
cttaaatatgagatattgaaagatgtttttaaggagaagtgggaggagga
gggtgcctaagtcctagggtcttcccaagggttgcttcctggagtcaggg
gtggggacaggaggcagagagcacaccagactcctcaggcttctctggag
gagcgattagcttctgcaaacaatcccggatttgctctcctctgggtcag
aaaagtcaacatgtattcaatacctttgctactttatcctcagccctgca
atattaactagagtggagacttagcagttccccccagagtacattggttg
agctactatttctcgaggaggttaagaagaggccaagcttggaccaggct
tggcagaccagcccaggaagacaaatttcaagggattgtaatagggaagc
taggccaggtggaattcctaagctcagtggagcctagaggcaacttgcca
gtcccaggagcactccagtctattcttgaagggcctggaagcaaaggctc
cttgttcaccttacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49631692_49632805
seq2: B6Ng01-173E02.b_33_1154 (reverse)

seq1  AATAAAGATTTTTATAATTAATTCTATGAAGTTTGTATTACTTT-AATTT  49
      |||||||| ||||||||||||||||||| |||||||| |||||| |||||
seq2  AATAAAGAATTTTATAATTAATTCTATG-AGTTTGTAATACTTTAAATTT  49

seq1  CCAAAT--CAAATAAA-GATGCCAAG-ATAAAAGATTACAGAGTAATACC  95
      ||||||   ||||||| |||||| || |||||||||  ||||||||||||
seq2  CCAAATTCAAAATAAAGGATGCCCAGAATAAAAGATACCAGAGTAATACC  99

seq1  TAATGCCTG-ACTAAGCATGCAAAACGCATTATTTGATAAAA-CCGTGTA  143
      ||||| ||| |||||||||||||||||||||||||||||||| |||||||
seq2  TAATGGCTGAACTAAGCATGCAAAACGCATTATTTGATAAAACCCGTGTA  149

seq1  AT-ATTTA-TATTACAGGAACTTATATGGCTAGGATGGTTTAATATCCGC  191
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATTATTACAGGAACTTATATGGCTAGGATGGTTTAATATCCGC  199

seq1  AATTTAATGTAGCTTATTCCATTTAGGAAATAAAGTGGAAAAAAGAATCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATGTAGCTTATTCCATTTAGGAAATAAAGTGGAAAAAAGAATCA  249

seq1  CAGAAAATGGATTTGACAAACACCATAATACTCTCAGAAAATTATAAGTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGGATTTGACAAACACCATAATACTCTCAGAAAATTATAAGTC  299

seq1  CAGGGATTATATTTCAGGGTGATAAATAATAATTATACAAATCTTTCAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTATATTTCAGGGTGATAAATAATAATTATACAAATCTTTCAAG  349

seq1  TTACATGAAAGTGGTGAAACCTGAAAACTTACTTTCCAAGAAAGGCTTTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAAAGTGGTGAAACCTGAAAACTTACTTTCCAAGAAAGGCTTTT  399

seq1  CAAAAATAAGAAGGATGAAGACTTTTACCAAGTGTTATTCACTTTACTAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAGAAGGATGAAGACTTTTACCAAGTGTTATTCACTTTACTAT  449

seq1  GAATTCTAAATATAGAGGGAAAAACGGCAAATTAGAGTAAAAAAAAAAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATATAGAGGGAAAAACGGCAAATTAGAGTAAAAAAAAAAAG  499

seq1  AAAATTAGAGTGTGATCCTTGTATTAGTTGATATTCTTATTTTTCTGAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGAGTGTGATCCTTGTATTAGTTGATATTCTTATTTTTCTGAGC  549

seq1  AAGTACATGACAACTAAAGTGAGAAAAGACTTGTTTTGGTTCATGGCCCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGACAACTAAAGTGAGAAAAGACTTGTTTTGGTTCATGGCCCA  599

seq1  TCATAAAAAGGACTGACAGTTCACAGCTGTAGCAACAGGATTTTTCTTAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAAGGACTGACAGTTCACAGCTGTAGCAACAGGATTTTTCTTAC  649

seq1  AATTGGATGGAATTGGAAGCAAAGTGAGATGAATGATGGTTCTCAGCTGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATGGAATTGGAAGCAAAGTGAGATGAATGATGGTTCTCAGCTGG  699

seq1  CTCCATCATTTTAGTTTATTAAATTGGTTTATTTTAGTTACATGTATACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCATTTTAGTTTATTAAATTGGTTTATTTTAGTTACATGTATACA  749

seq1  ATGCATACTATAGACAATCTCAGGCCCAACTCTATCACCACTGTTCAAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACTATAGACAATCTCAGGCCCAACTCTATCACCACTGTTCAAGT  799

seq1  GTTCTTCATTCACAGGTATCTCAGGTCCATTTAATTGTATCATTTTGTCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCATTCACAGGTATCTCAGGTCCATTTAATTGTATCATTTTGTCC  849

seq1  TGTGACCCATTGAATTTAGCTACATTTATCTGCTTAATCTTGGATTTGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCATTGAATTTAGCTACATTTATCTGCTTAATCTTGGATTTGGA  899

seq1  GCTATTCAGTGGAACACTGGATCTTGTCAGTGAGTATACAACTAAAAACA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCAGTGGAACACTGGATCTTGTCAGTGAGTATACAACTAAAAACA  949

seq1  TTGAAATTGATTCCACTTTCCCATAATCAATATGTTAATGATAAAGGGTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTGATTCCACTTTCCCATAATCAATATGTTAATGATAAAGGGTA  999

seq1  GAGTCTTGTGATTGCTATCCTTTCCATCACTGGCTGGTAATAGGGCCAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGTGATTGCTATCCTTTCCATCACTGGCTGGTAATAGGGCCAAT  1049

seq1  TTTGTGTTGGGCAAATGCAGATAACTATTGCTGTCATGAGTTAATGCTTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTGGGCAAATGCAGATAACTATTGCTGTCATGAGTTAATGCTTC  1099

seq1  TATTGAGTCTAGAAAATGAATTC  1114
      |||||||||||||||||||||||
seq2  TATTGAGTCTAGAAAATGAATTC  1122


seq1: chr10_49508751_49509858
seq2: B6Ng01-173E02.g_68_1184

seq1  GAATTCCGGGTACTGACCACCTAGTGCTTCCGGAACCCTCGGCCCTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGGTACTGACCACCTAGTGCTTCCGGAACCCTCGGCCCTGATT  50

seq1  TCGTCTCCTGCAAGCAAGCACATCCACATCCAGGCATAGGGGAACAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTCCTGCAAGCAAGCACATCCACATCCAGGCATAGGGGAACAGGGA  100

seq1  CAGAGATGCTCTGAATGACAGTGGGTAAGGCAAAAGGGACAAGGATTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGCTCTGAATGACAGTGGGTAAGGCAAAAGGGACAAGGATTGAT  150

seq1  TTTGCCTGCTCTGAGAAGCTACACTGAGTATAAGGACTCATAGCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGCTCTGAGAAGCTACACTGAGTATAAGGACTCATAGCTTCTGC  200

seq1  TTCTGGGTGGCTGCTTTTTTGCTGCTCCTGAAACCATGGCAACGAGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTGGCTGCTTTTTTGCTGCTCCTGAAACCATGGCAACGAGACTT  250

seq1  CTATGTTGCCAGCATCTGGGGAGCAGCTGGTTGTCTCCAAAGTGACCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGCCAGCATCTGGGGAGCAGCTGGTTGTCTCCAAAGTGACCCTT  300

seq1  TTGGTTCAACTACTGCATTTCCCATTCAGGTTGGTGAGGATCATCTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAACTACTGCATTTCCCATTCAGGTTGGTGAGGATCATCTTGGT  350

seq1  TTCTGCATCTTCTACTTCTATCCTGCTTCTCAAGCTAGATGGGTTTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATCTTCTACTTCTATCCTGCTTCTCAAGCTAGATGGGTTTTGGT  400

seq1  CTCTCCTGGTGTCCAGTAGCAAAAGAAATGGACTTTCAACATCAAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGTGTCCAGTAGCAAAAGAAATGGACTTTCAACATCAAGAAGC  450

seq1  TGGCAGGAAATCTCAGCACAGGTCTAGCCCCTTTATATCTGATTTTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAAATCTCAGCACAGGTCTAGCCCCTTTATATCTGATTTTGTTC  500

seq1  TTCAAGCTAGGTCCCTGAACTCTGAGGGAATTTGAGGCCTGGCAAGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTAGGTCCCTGAACTCTGAGGGAATTTGAGGCCTGGCAAGCACA  550

seq1  GAACCTGGAGTCCTAGCTGTCATGGTTGGGAAAATGAGCATATAGAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGAGTCCTAGCTGTCATGGTTGGGAAAATGAGCATATAGAAGTA  600

seq1  CTTAAATATGAGATATTGAAAGATGTTTTTAAGGAGAAGTGGGAGGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATGAGATATTGAAAGATGTTTTTAAGGAGAAGTGGGAGGAGGA  650

seq1  GGGTGCCTAAGTCCTAGGGTCTTCCCAAGGGTTGCTTCCTGGAGTCAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCTAAGTCCTAGGGTCTTCCCAAGGGTTGCTTCCTGGAGTCAGGG  700

seq1  GTGGGGACAGGAGGCAGAGAGCACACCAGACTCCTCAGGCTTCTCTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGACAGGAGGCAGAGAGCACACCAGACTCCTCAGGCTTCTCTGGAG  750

seq1  GAGCGATTAGCTTCTGCAAACAATCCCGGATTTGCTCTCCTCTGGGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGATTAGCTTCTGCAAACAATCCCGGATTTGCTCTCCTCTGGGTCAG  800

seq1  AAAAGTCAACATGTATTCAATACCTTTGCTACTTTATCCTCAGCCCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAACATGTATTCAATACCTTTGCTACTTTATCCTCAGCCCTGCA  850

seq1  ATATTAACTAGAGTGGAGACTTAGCAGTTCCCCCCAGAGTACATTGG-TG  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATATTAACTAGAGTGGAGACTTAGCAGTTCCCCCCAGAGTACATTGGTTG  900

seq1  AGCTACTA-TTCTCGAGGAGGTTTAAGAGAGGCCAAGCTT-GAACAGGCT  947
      |||||||| |||||||||||||| |  ||||||||||||| || ||||||
seq2  AGCTACTATTTCTCGAGGAGGTTAAGAAGAGGCCAAGCTTGGACCAGGCT  950

seq1  TGGCAGACCAGCCCAGG-AGACAAATTTCAAAGGGATTGTAATA-GGAAG  995
      ||||||||||||||||| ||||||||||| |||||||||||||| |||||
seq2  TGGCAGACCAGCCCAGGAAGACAAATTTC-AAGGGATTGTAATAGGGAAG  999

seq1  C-AGGCCAGGTGGAATTCCTAAGCTCAGTGGAGCCTAGAGGCAACT--GC  1042
      | ||||||||||||||||||||||||||||||||||||||||||||   |
seq2  CTAGGCCAGGTGGAATTCCTAAGCTCAGTGGAGCCTAGAGGCAACTTGCC  1049

seq1  AGTCCCAGGAGCACTCCAGTCTAATTCTGAAGGG-CTGGAAGCAGAGGCT  1091
      ||||||||||||||||||||||| |  ||||||| ||||||||| |||||
seq2  AGTCCCAGGAGCACTCCAGTCTATTCTTGAAGGGCCTGGAAGCAAAGGCT  1099

seq1  CC-TGTTCACCCTACAGC  1108
      || |||||||| ||||||
seq2  CCTTGTTCACCTTACAGC  1117


| Home | SequenceCutter | Blast | Download |