BAC Information

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BAC

Clone NameB6Ng01-173K23
Chromosome10 (Build37)
Map Location 53,595,935 - 53,763,201
singlet/doubletdoublet
Overlap geneMan1a
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
Downstream geneLOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K23.bB6Ng01-173K23.g
ACCGA001967GA001968
length1,148579
definitionB6Ng01-173K23.b B6Ng01-173K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,595,935 - 53,597,096)(53,762,623 - 53,763,201)
sequence
gaattctcatgttcctctagctttcgacacagaacccagcttggccccac
cctgcttatgcaagttgtttttcacttgtcctcaatagctcctcctctgc
tggcccctattgacctcattattcaccacttcatcttccaaatattcttc
taggtctcctgattctcctcccttaggatggtcagtagaaagcagacaca
tgccctgcctctccccaaagttcattctgcttttcatgatggctttgttt
ttccccagccttaaagtcatggttgaagtcatggtgcctgttcttcttag
taaatacaggtaagaaacagcaggcgtcaagaacatctctgtgtttgtta
cagcaccgttcacagtatccactgatatggagacaacaaaagtggtcatt
gagggatgagtagataaagaaactttggtacatctacacaagagaatagt
attcattcataaagaaggataaaaccctgttatttatagcagcatacatg
gaaccagaggttgttagattaatagaaaataagccaggcaaagaaacata
aatatttgatgacttccctcaattatggaagctaaaagttccattttgta
gaagtgaagaatggttatcagaggctgaggagggtcatgtggagcacaca
gaaaagtcagataacaggcaccaaagaatggtcaaatagactaagttctg
gtgctgtacagcatggtagagaaagagcaattttgaatggctaaaaatgt
agcaatatagattatataaccaaaactacagtataaacaagtacaaagca
acacaaagggtgaagtgttccctgggacaggaaagcccaggtagaagatc
tgtgctcttagctgtgacctgctttcaatgcagagagacaaggcagctag
ttcttcccaagaaggaagggaaaaagggtggcctgctggctggcaacaat
aggatggaggattcccaagaacatatctacagacagcacagctggctcct
gaatagataacaggtcatgcccctctcatcatggccttcttgtcttggag
gcttattatggccttcattgtcagcaagcgggcacttaaggacccttata
gtcaactgtgctctgcaaggattccaacatcctttggatctctgttgg

gaattctaatgtaagccacaaacattgggagctgatggtgtataactgta
ggttcatcacttgtaatgaatatacctctctgtatggggttgatcttgca
gaggttgtatgcttgttgtaagcggggcatttgggagctgtgtgcttttc
tggttagtattgctatgaccataaaattgttctaaaaaacctcttcattt
agttaaaacataaaacattgagaaaaagaaataaagaacacatgtaccct
tttcttcttgatagcaaaagagaagacttcaattctctggggctaactgg
gtcgttcttttacagtcaagttaactgtaggatttaaaaaaaataaattt
caagttacttttcattggtcactgttttttaccacaagtacttttattgt
taataacttttctcaatattaacaatgacctcctagtatttgtaaaattt
agaaaaagattctaaatgaacaaaagtttagtctctgtgaatttgacaaa
tccactaattctttagaataataaacccacatatttctgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53595935_53597096
seq2: B6Ng01-173K23.b_48_1195

seq1  GAATTCTCATGTTCCTCTAGCTTTCGACACAGAACCCAGCTTGGCCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTTCCTCTAGCTTTCGACACAGAACCCAGCTTGGCCCCAC  50

seq1  CCTGCTTATGCAAGTTGTTTTTCACTTGTCCTCAATAGCTCCTCCTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTATGCAAGTTGTTTTTCACTTGTCCTCAATAGCTCCTCCTCTGC  100

seq1  TGGCCCCTATTGACCTCATTATTCACCACTTCATCTTCCAAATATTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTATTGACCTCATTATTCACCACTTCATCTTCCAAATATTCTTC  150

seq1  TAGGTCTCCTGATTCTCCTCCCTTAGGATGGTCAGTAGAAAGCAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTCCTGATTCTCCTCCCTTAGGATGGTCAGTAGAAAGCAGACACA  200

seq1  TGCCCTGCCTCTCCCCAAAGTTCATTCTGCTTTTCATGATGGCTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGCCTCTCCCCAAAGTTCATTCTGCTTTTCATGATGGCTTTGTTT  250

seq1  TTCCCCAGCCTTAAAGTCATGGTTGAAGTCATGGTGCCTGTTCTTCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGCCTTAAAGTCATGGTTGAAGTCATGGTGCCTGTTCTTCTTAG  300

seq1  TAAATACAGGTAAGAAACAGCAGGCGTCAAGAACATCTCTGTGTTTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAGGTAAGAAACAGCAGGCGTCAAGAACATCTCTGTGTTTGTTA  350

seq1  CAGCACCGTTCACAGTATCCACTGATATGGAGACAACAAAAGTGGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCGTTCACAGTATCCACTGATATGGAGACAACAAAAGTGGTCATT  400

seq1  GAGGGATGAGTAGATAAAGAAACTTTGGTACATCTACACAAGAGAATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGAGTAGATAAAGAAACTTTGGTACATCTACACAAGAGAATAGT  450

seq1  ATTCATTCATAAAGAAGGATAAAACCCTGTTATTTATAGCAGCATACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCATAAAGAAGGATAAAACCCTGTTATTTATAGCAGCATACATG  500

seq1  GAACCAGAGGTTGTTAGATTAATAGAAAATAAGCCAGGCAAAGAAACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAGGTTGTTAGATTAATAGAAAATAAGCCAGGCAAAGAAACATA  550

seq1  AATATTTGATGACTTCCCTCAATTATGGAAGCTAAAAGTTCCATTTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGATGACTTCCCTCAATTATGGAAGCTAAAAGTTCCATTTTGTA  600

seq1  GAAGTGAAGAATGGTTATCAGAGGCTGAGGAGGGTCATGTGGAGCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAGAATGGTTATCAGAGGCTGAGGAGGGTCATGTGGAGCACACA  650

seq1  GAAAAGTCAGATAACAGGCACCAAAGAATGGTCAAATAGACTAAGTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCAGATAACAGGCACCAAAGAATGGTCAAATAGACTAAGTTCTG  700

seq1  GTGCTGTACAGCATGGTAGAGAAAGAGCAATTTTGAATGGCTAAAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTACAGCATGGTAGAGAAAGAGCAATTTTGAATGGCTAAAAATGT  750

seq1  AGCAATATAGATTATATAACCAAAACTACAGTATAAACAAGTACAAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATAGATTATATAACCAAAACTACAGTATAAACAAGTACAAAGCA  800

seq1  ACACAAAGGGTGAAGTGTTCCCTGGGACAGGAAAGCCCAGGTAGAAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGGTGAAGTGTTCCCTGGGACAGGAAAGCCCAGGTAGAAGATC  850

seq1  TGTGCTCTTAGCTGTGACCTGCTTTCAATGCAGAGAGACAAGGCAGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTTAGCTGTGACCTGCTTTCAATGCAGAGAGACAAGGCAGCTAG  900

seq1  TTCTT-CCAAG-AGGAAGGGAAAAAGGGTGG-CTGCTGGCTGGCAACAAA  947
      ||||| ||||| ||||||||||||||||||| ||||||||||||||| ||
seq2  TTCTTCCCAAGAAGGAAGGGAAAAAGGGTGGCCTGCTGGCTGGCAAC-AA  949

seq1  TAGGATGGAGGATT-CCAAGAACATATCTACAGACAGGCACAGCTGGCTC  996
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  TAGGATGGAGGATTCCCAAGAACATATCTACAGACA-GCACAGCTGGCTC  998

seq1  CTGGATAGATAACAGGGTCATGCCCCTTCCTCCATCCATGGCCTTCCTTT  1046
      ||| |||||||||| ||||||||||||  || ||| ||||||||||  ||
seq2  CTGAATAGATAACA-GGTCATGCCCCT--CT-CAT-CATGGCCTTC--TT  1041

seq1  GTCTTTGAAGCCTTATTTATGG-CTTCATTTTGTCCACAAACCGGGCACT  1095
      ||| ||| || |||| |||||| ||||||| |   ||  || ||||||||
seq2  GTC-TTGGAGGCTTA-TTATGGCCTTCATTGT---CAGCAAGCGGGCACT  1086

seq1  AAGGGACAC-TATAGTCCACTGTGCTTCTGGGAAAGAGTTCACAACATTT  1144
       | |||| | ||||||| ||||||| |||  | |||  ||| ||||| | 
seq2  TAAGGACCCTTATAGTCAACTGTGC-TCT--GCAAGGATTC-CAACA-TC  1131

seq1  CTTTGTGTTCTCTGTTGG  1162
      ||||| | ||||||||||
seq2  CTTTG-GATCTCTGTTGG  1148


seq1: chr10_53762623_53763201
seq2: B6Ng01-173K23.g_67_645 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACAGAAATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACAGAAATATG  50

seq1  TGGGTTTATTATTCTAAAGAATTAGTGGATTTGTCAAATTCACAGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTATTATTCTAAAGAATTAGTGGATTTGTCAAATTCACAGAGACT  100

seq1  AAACTTTTGTTCATTTAGAATCTTTTTCTAAATTTTACAAATACTAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGTTCATTTAGAATCTTTTTCTAAATTTTACAAATACTAGGAG  150

seq1  GTCATTGTTAATATTGAGAAAAGTTATTAACAATAAAAGTACTTGTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTTAATATTGAGAAAAGTTATTAACAATAAAAGTACTTGTGGTA  200

seq1  AAAAACAGTGACCAATGAAAAGTAACTTGAAATTTATTTTTTTTAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGTGACCAATGAAAAGTAACTTGAAATTTATTTTTTTTAAATCC  250

seq1  TACAGTTAACTTGACTGTAAAAGAACGACCCAGTTAGCCCCAGAGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTAACTTGACTGTAAAAGAACGACCCAGTTAGCCCCAGAGAATTG  300

seq1  AAGTCTTCTCTTTTGCTATCAAGAAGAAAAGGGTACATGTGTTCTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCTCTTTTGCTATCAAGAAGAAAAGGGTACATGTGTTCTTTATT  350

seq1  TCTTTTTCTCAATGTTTTATGTTTTAACTAAATGAAGAGGTTTTTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTCAATGTTTTATGTTTTAACTAAATGAAGAGGTTTTTTAGAA  400

seq1  CAATTTTATGGTCATAGCAATACTAACCAGAAAAGCACACAGCTCCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATGGTCATAGCAATACTAACCAGAAAAGCACACAGCTCCCAAA  450

seq1  TGCCCCGCTTACAACAAGCATACAACCTCTGCAAGATCAACCCCATACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCGCTTACAACAAGCATACAACCTCTGCAAGATCAACCCCATACAG  500

seq1  AGAGGTATATTCATTACAAGTGATGAACCTACAGTTATACACCATCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATATTCATTACAAGTGATGAACCTACAGTTATACACCATCAGCT  550

seq1  CCCAATGTTTGTGGCTTACATTAGAATTC  579
      |||||||||||||||||||||||||||||
seq2  CCCAATGTTTGTGGCTTACATTAGAATTC  579


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