BAC Information

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BAC

Clone NameB6Ng01-174E11
Chromosome10 (Build37)
Map Location 111,791,059 - 111,928,080
singlet/doubletdoublet
Overlap geneKcnc2
Upstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Downstream geneLOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174E11.bB6Ng01-174E11.g
ACCGA002401GA002402
length1,1551,189
definitionB6Ng01-174E11.b B6Ng01-174E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,791,059 - 111,792,192)(111,926,785 - 111,928,080)
sequence
gaattctttccaatatgtaactgtgcaattgcctagtaaatatgttatgt
gcacatattacagagaaccaatgctaggtcaccgtgcatttagctggctg
tcatttagaattcttaacttgccctaattttaaatatgcagtttcttact
tcataaagtactcattttctcttttcattctttagtatgaaataattacc
atcatcgaataatgtcactatcaactacttcctttctgacactttaaaat
aaatggtatgcttatccatgagtttactgatagctacttcaaagtgtaaa
ccctcatcattccaacagtctttacccagttccagacttccaacctatct
tcttcttctctgtaatcacgttttttatttctacactgctacatggtgat
ttttctaatcacagaactgattatacaccccacctcttttaaaaaacaaa
gctaaaactaagcagaaactaaacatacatttctttgttttcagaaaagt
tggatttacagaactgtatatttttttaaatttaattttgttcaaacagt
gtattttgaccaaatgcctttttctcctacactcctcctaggtcctcttc
atctcccctacctatgcaacctcataattgtgcttgctgccctgcttact
ccaagtcgagagagagagagagagagagagagagagacagagacagagac
agagacagagacagagacagagagacagaaagagagagacagagagacag
agagagagaatgaaaataattcactatcatgttatttgtgtttctgaatt
ttcagtctatgccattttcaattatagtttcagttttgtacaagtgtccc
tgattgtctcctgtcttccccatatcctggccatagaatagtgagatgga
aaacagctgaaggcggactttcccacttgccccattaaacatctcaggct
gtccagaccacagagcagggaggaacaattctagaggatagtcaatggtt
ttgctttagtagaagttgataagaggtttttatgggggagaggtggaatt
gccaatatattctcacaggaaaaataggcaagaaagggggaatgaacagt
aagttagatttaaagagagttgacagcatttgccttccggggggtgaccg
cattt

gaattcaatttgaattgaactgtagccatgacatcttcttctaagttgaa
ctaatttttcctattttgtataccctactaacagactatttttatataga
aatgtggatctgagtttccattccatggccttgatctgtatgtgtgtata
tgtatacatgtatgcatatgtgttgcatgcagaggtgtatacatatatac
atatacgtaaaataacattatatctttggattgcatcctggtcttggtag
tctctgttttcctctttctcttcaaaactgacatgctactaatgctaatc
agaaactgacctcactgccaggatctgtagaagtagagtcttttgtaggt
tattagataataagagtcaggctttcaactgctcaaattcgtatacttta
acaacagctacaatcctagcttgtggggactgagaataaatgatggatat
gggactcaggagatggatagtcacctgatacaggttctcacctcctcgat
cttgtacttctgagcatccgaaactgcaaaacaaaaatctgctatttagg
tccatactctgcatggtattctgccacagaagtccaaaagcactaagatg
tattgaaaggtaaggactgttttataccagttttaacatacacttaaagt
attaaaaacttctctggtggtctgttaagatcaggctatgccatactctt
aactactaaatattctatttaataatgtagctatttatttatttatttat
ttatggtttcaataaatttgttttttgattttcagtctgtctttcccagg
gagacttcattttacaagcaccttttaacctagatttctctgaatgaaac
cagaaactacaccacctttcagggtccattccatcacatgaattattcct
gggcccagaaaaggcagtcagccagcttataagtttattggattacttca
ctcagaaggaactcgcacaatatgtactcactgataagtgggatattagc
ccagaaacttatgatacccctagatataagatacaacttgccaaacgcat
gaaattcagaggattgaagaccaaagtgtgaccttacccttctttagaaa
tggacccaaaccacccatagaggagtcagaagatcaatttggaactgtga
acgaagatgacccatctatggaattgccatatgccaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111791059_111792192
seq2: B6Ng01-174E11.b_43_1197

seq1  GAATTCTTTCCAATATGTAACTGTGCAATTGCCTAGTAAATATGTTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAATATGTAACTGTGCAATTGCCTAGTAAATATGTTATGT  50

seq1  GCACATATTACAGAGAACCAATGCTAGGTCACCGTGCATTTAGCTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATTACAGAGAACCAATGCTAGGTCACCGTGCATTTAGCTGGCTG  100

seq1  TCATTTAGAATTCTTAACTTGCCCTAATTTTAAATATGCAGTTTCTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGAATTCTTAACTTGCCCTAATTTTAAATATGCAGTTTCTTACT  150

seq1  TCATAAAGTACTCATTTTCTCTTTTCATTCTTTAGTATGAAATAATTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGTACTCATTTTCTCTTTTCATTCTTTAGTATGAAATAATTACC  200

seq1  ATCATCGAATAATGTCACTATCAACTACTTCCTTTCTGACACTTTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCGAATAATGTCACTATCAACTACTTCCTTTCTGACACTTTAAAAT  250

seq1  AAATGGTATGCTTATCCATGAGTTTACTGATAGCTACTTCAAAGTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTATGCTTATCCATGAGTTTACTGATAGCTACTTCAAAGTGTAAA  300

seq1  CCCTCATCATTCCAACAGTCTTTACCCAGTTCCAGACTTCCAACCTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCATTCCAACAGTCTTTACCCAGTTCCAGACTTCCAACCTATCT  350

seq1  TCTTCTTCTCTGTAATCACGTTTTTTATTTCTACACTGCTACATGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTCTGTAATCACGTTTTTTATTTCTACACTGCTACATGGTGAT  400

seq1  TTTTCTAATCACAGAACTGATTATACACCCCACCTCTTTTAAAAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATCACAGAACTGATTATACACCCCACCTCTTTTAAAAAACAAA  450

seq1  GCTAAAACTAAGCAGAAACTAAACATACATTTCTTTGTTTTCAGAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACTAAGCAGAAACTAAACATACATTTCTTTGTTTTCAGAAAAGT  500

seq1  TGGATTTACAGAACTGTATATTTTTTTAAATTTAATTTTGTTCAAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTACAGAACTGTATATTTTTTTAAATTTAATTTTGTTCAAACAGT  550

seq1  GTATTTTGACCAAATGCCTTTTTCTCCTACACTCCTCCTAGGTCCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGACCAAATGCCTTTTTCTCCTACACTCCTCCTAGGTCCTCTTC  600

seq1  ATCTCCCCTACCTATGCAACCTCATAATTGTGCTTGCTGCCCTGCTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCTACCTATGCAACCTCATAATTGTGCTTGCTGCCCTGCTTACT  650

seq1  CCAAGTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAC  700

seq1  AGAGACAGAGACAGAGACAGAGAGACAGAAAGAGAGAGACAGAGAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGACAGAGAGACAGAAAGAGAGAGACAGAGAGACAG  750

seq1  AGAGAGAGAATGAAAATAATTCACTATCATGTTATTTGTGTTTCTGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAATGAAAATAATTCACTATCATGTTATTTGTGTTTCTGAATT  800

seq1  TTCAGTCTATGCCATTTTCAATTATAGTTTCAGTTTTGTACAAGTGTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTATGCCATTTTCAATTATAGTTTCAGTTTTGTACAAGTGTCCC  850

seq1  TGATTGTCTCCTGTCTTCCCCATATCCTGGCCATAGAATAGTGAGATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCTCCTGTCTTCCCCATATCCTGGCCATAGAATAGTGAGATGGA  900

seq1  AAACAGCTG-AGGCGGACTTTCCCAC-TGCCCCATTAAACATCTCAGGCT  948
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  AAACAGCTGAAGGCGGACTTTCCCACTTGCCCCATTAAACATCTCAGGCT  950

seq1  GTCCAGACCACAGAGCAGGGAGGAAC-ATTCTAGAGGATAGTCAATGG-T  996
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  GTCCAGACCACAGAGCAGGGAGGAACAATTCTAGAGGATAGTCAATGGTT  1000

seq1  TTGCTTTAGTAG-AGTTGAT-AGAGG-TTTTAT-GGGGAGA-GTGGAATT  1041
      |||||||||||| ||||||| ||||| |||||| ||||||| ||||||||
seq2  TTGCTTTAGTAGAAGTTGATAAGAGGTTTTTATGGGGGAGAGGTGGAATT  1050

seq1  G-CAATA-ATTTTCACAAG-AAAATAGG-AAGAAAGGGGGAATGAACAGT  1087
      | ||||| ||| ||||| | |||||||| |||||||||||||||||||||
seq2  GCCAATATATTCTCACAGGAAAAATAGGCAAGAAAGGGGGAATGAACAGT  1100

seq1  AAGTTAGATT---AGAGAG-TGACAGC-TTTG-CTTC--GGGGGTGACAG  1129
      ||||||||||   |||||| ||||||| |||| ||||  ||||||||| |
seq2  AAGTTAGATTTAAAGAGAGTTGACAGCATTTGCCTTCCGGGGGGTGACCG  1150

seq1  CATTT  1134
      |||||
seq2  CATTT  1155


seq1: chr10_111926785_111928080
seq2: B6Ng01-174E11.g_67_1255 (reverse)

seq1  CCCTGGCATAGTCTCACAAGAGAGAGCTATATCTGGGTCCTTTCAGCAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAATCTGATTATGGGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGATCCCT-GCATATGGCAA-TCACTAGATGGTCCATCCTTTCG-TCAC  147
           |||| ||||||||||| ||  |||||||  ||||  |||| ||||
seq2  -----CCCTGGCATATGGCAATTCCATAGATGGGTCATC--TTCGTTCAC  43

seq1  AGCTCCAAATTTTGTCTCTGTAACTCCTTCTATGGGTGTTTTGTTCCCAT  197
      || ||||||||     ||||  ||||| |||||||||| ||||   ||||
seq2  AGTTCCAAATTGATCTTCTG--ACTCC-TCTATGGGTGGTTTGGGTCCAT  90

seq1  TTCTAAGAAAGGGTAAAGTGTCAACACTTTGGTCTTCATTCTTCTTGAAT  247
      ||||||  |||||||| ||    ||||||||||||||| || || |||||
seq2  TTCTAAAGAAGGGTAAGGT---CACACTTTGGTCTTCAATCCTC-TGAAT  136

seq1  TTCATGCGTTTGGCAAGTTGTATCTTATATCT-TGGGTATCCTAAGTTTC  296
      ||||||||||||||||||||||||||||||||  ||||||| ||||||||
seq2  TTCATGCGTTTGGCAAGTTGTATCTTATATCTAGGGGTATCATAAGTTTC  186

seq1  TGGGCTAATAT-CCACTTATCAGTGAGTACATATTGTGCGAGTTCCTTCT  345
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAATATCCCACTTATCAGTGAGTACATATTGTGCGAGTTCCTTCT  236

seq1  GAGTGAAGTAATCCAATAAACTTATAAGCTGGCTGACTGCC-TTTCTGGG  394
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGTGAAGTAATCCAATAAACTTATAAGCTGGCTGACTGCCTTTTCTGGG  286

seq1  CCCAGGAATAATTCATGTGATGGAATGGACCCTGAAAGGTGGTGTAGTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAATAATTCATGTGATGGAATGGACCCTGAAAGGTGGTGTAGTTT  336

seq1  CTGGTTTCATTCAGAGAAATCTAGGTTAAAAGGTGCTTGTAAAATGAAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCATTCAGAGAAATCTAGGTTAAAAGGTGCTTGTAAAATGAAGT  386

seq1  CTCCCTGGGAAAGACAGACTGAAAATC-AAAAACAAATTTATTGAAACCA  543
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCCCTGGGAAAGACAGACTGAAAATCAAAAAACAAATTTATTGAAACCA  436

seq1  TAAATAAATAAATAAATAAATAGCTACATTATTAAATAGAATATTTAGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAGCTACATTATTAAATAGAATATTTAGTA  486

seq1  GTTAAGAGTATGGCATAGCCTGATCTTAACAGACCACCAGAGAAGTTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGTATGGCATAGCCTGATCTTAACAGACCACCAGAGAAGTTTTT  536

seq1  AATACTTTAAGTGTATGTTAAAACTGGTATAAAACAGTCCTTACCTTTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTAAGTGTATGTTAAAACTGGTATAAAACAGTCCTTACCTTTCA  586

seq1  ATACATCTTAGTGCTTTTGGACTTCTGTGGCAGAATACCATGCAGAGTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTTAGTGCTTTTGGACTTCTGTGGCAGAATACCATGCAGAGTAT  636

seq1  GGACCTAAATAGCAGATTTTTGTTTTGCAGTTTCGGATGCTCAGAAGTAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAAATAGCAGATTTTTGTTTTGCAGTTTCGGATGCTCAGAAGTAC  686

seq1  AAGATCGAGGAGGTGAGAACCTGTATCAGGTGACTATCCATCTCCTGAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCGAGGAGGTGAGAACCTGTATCAGGTGACTATCCATCTCCTGAGT  736

seq1  CCCATATCCATCATTTATTCTCAGTCCCCACAAGCTAGGATTGTAGCTGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCCATCATTTATTCTCAGTCCCCACAAGCTAGGATTGTAGCTGT  786

seq1  TGTTAAAGTATACGAATTTGAGCAGTTGAAAGCCTGACTCTTATTATCTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGTATACGAATTTGAGCAGTTGAAAGCCTGACTCTTATTATCTA  836

seq1  ATAACCTACAAAAGACTCTACTTCTACAGATCCTGGCAGTGAGGTCAGTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTACAAAAGACTCTACTTCTACAGATCCTGGCAGTGAGGTCAGTT  886

seq1  TCTGATTAGCATTAGTAGCATGTCAGTTTTGAAGAGAAAGAGGAAAACAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTAGCATTAGTAGCATGTCAGTTTTGAAGAGAAAGAGGAAAACAG  936

seq1  AGACTACCAAGACCAGGATGCAATCCAAAGATATAATGTTATTTTACGTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCAAGACCAGGATGCAATCCAAAGATATAATGTTATTTTACGTA  986

seq1  TATGTATATATGTATACACCTCTGCATGCAACACATATGCATACATGTAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATATGTATACACCTCTGCATGCAACACATATGCATACATGTAT  1036

seq1  ACATATACACACATACAGATCAAGGCCATGGAATGGAAACTCAGATCCAC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACACACATACAGATCAAGGCCATGGAATGGAAACTCAGATCCAC  1086

seq1  ATTTCTATATAAAAATAGTCTGTTAGTAGGGTATACAAAATAGGAAAAAT  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATATAAAAATAGTCTGTTAGTAGGGTATACAAAATAGGAAAAAT  1136

seq1  TAGTTCAACTTAGAAGAAGATGTCATGGCTACAGTTCAATTCAAATTGAA  1293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAACTTAGAAGAAGATGTCATGGCTACAGTTCAATTCAAATTGAA  1186

seq1  TTC  1296
      |||
seq2  TTC  1189


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