BAC Information

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BAC

Clone NameB6Ng01-174M10
Chromosome10 (Build37)
Map Location 113,736,871 - 113,856,432
singlet/doubletdoublet
Overlap geneTrhde
Upstream geneLOC100042655, LOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174M10.bB6Ng01-174M10.g
ACCGA002759GA002760
length1,2011,180
definitionB6Ng01-174M10.b B6Ng01-174M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,736,871 - 113,738,056)(113,855,254 - 113,856,432)
sequence
gaattcattttacaaattgaatcctagtaaattatgaatgacagagtaag
aagcaagaagcagtatgtattaccaaggtaattctggagaggtctgtctg
gtctgtgttgtgttttctttggacatttgtctacacaaactgactatgcc
atgcataaccaaggtctagctagggaagcatgactagaaacagattgctt
agaaaaatagataaattatatactcaagtatgagaacctagaatataccc
agaaagagaagggtgaataaacacactatggaattcacaaacttctctga
ataatagttatttttcatcatataaagattcctctctgccatacatatag
tgttctacttattgtttggaaaacctcagtgacaacctggagagttatat
ccccaggagtttggatctctatctggccaagcaataaagcttcataactc
ttggcaaatatcagtttccggctatatctacacagcgagattcacagtgc
tctaactactttgagttaccaagtaggacacttagaacagtggtttttat
atgataccaggtaaaataaaatatgtccttactctcttttataactattt
tcactcttcttagtttggaatattttataagtctattttgttaattgatt
atgattctagtagttgaatatcaatggaattggacagctaatgatgccat
atgacaaagcacaagagtagatttattacagagcttaccctgaataaaat
ttgtgcagagataagtttattaaatggtctttcatcgaaagatgcttaac
tgtgcttttattacattttcatgtatttctggaatttaaaatagaaaaag
aacacaataaaataatttactttgatactcgaatgcaaatacacttgaaa
aatcaaccattcaggctaaaatgtttaaatgaccccaagtatgcttttcc
tttgtgagtgtactcaagtatgtgaagggggaacaggtggtgctcttcat
tttggagtggaaggcagaggtccaagtggtatatcctttctgaatttcac
atgatcttattccctaagaataggttccttactaatcctgaagctcacta
tttctgctagaacaagtgaccaatctctcccttctggaattggaatattt
gccattccatgtgtacaccccacactcgtaaaccagatagtggaattaca
c

gaattccatgttcattaattaaaaataattaaatgttgggccccactatt
tattgatggcatatgaagctccactgagaggcagtgctgttctcagagag
gctcctatgagcaatatttctcattgtctttgaaaataattaaacccaca
tttcaatgttaatacaatcactaatgaaaagattcttgtactaacagagc
aagaagggactttagaacccttggactttagccctgtccaattaggatga
aaaacgaagcccaaagcattgaccttgactcactcagaccagaaacaaac
tcctagcaaaattagttctaagaaatctacttgaaaatagatgaatattt
tttattaattataaaatatatttttaaagtagtggtttattttcattcaa
tcaatgtaacttttctatggaagatgttttatgctttaatattatatcat
tagtatcatgtctgattattcagtagaagttttatgtatgtgttttactc
taataataacaagcttgtctttgcaaatgtaattaaatatttgatattcc
ccacgtaaaggcaaaactatttaattactaaacttgaagttataatttag
caaaagactgctacctatgatacttgggccttaaagaacattttaatatc
ttctctttatcccttcagtattctcctcctatgactaagtatattgcatt
atttaattaaaataatattaaatgtattctctgacaatatcatacatata
cataacacattttaattagtctcatctcacactttcttcccttccctacc
catataacagacctttcttctctccaaggcctttcccttgctcaccattt
atgtctttctgttcttgtttcaggatcactgagttgatccagagcagcct
tcatgaaaagaaattttgtaacactggggttcttgttgtctcaccaagga
cacactgtttaaaactgtaacttctacttcacccagtatcaatcagggtt
agtagtttgcaaaataagaggaagggccatatgaggctttttaaaataag
gatctttgacaattgtctacattaatttgttttggacatcttattcaatt
aatattatccaatactgtactttaatctcattttagtacctttatgactg
aatcttggtgcacaaaggcttctattggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_113736871_113738056
seq2: B6Ng01-174M10.b_49_1249

seq1  GAATTCATTTTACAAATTGAATCCTAGTAAATTATGAATGACAGAGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTACAAATTGAATCCTAGTAAATTATGAATGACAGAGTAAG  50

seq1  AAGCAAGAAGCAGTATGTATTACCAAGGTAATTCTGGAGAGGTCTGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAAGCAGTATGTATTACCAAGGTAATTCTGGAGAGGTCTGTCTG  100

seq1  GTCTGTGTTGTGTTTTCTTTGGACATTTGTCTACACAAACTGACTATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTTGTGTTTTCTTTGGACATTTGTCTACACAAACTGACTATGCC  150

seq1  ATGCATAACCAAGGTCTAGCTAGGGAAGCATGACTAGAAACAGATTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAACCAAGGTCTAGCTAGGGAAGCATGACTAGAAACAGATTGCTT  200

seq1  AGAAAAATAGATAAATTATATACTCAAGTATGAGAACCTAGAATATACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAGATAAATTATATACTCAAGTATGAGAACCTAGAATATACCC  250

seq1  AGAAAGAGAAGGGTGAATAAACACACTATGGAATTCACAAACTTCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAAGGGTGAATAAACACACTATGGAATTCACAAACTTCTCTGA  300

seq1  ATAATAGTTATTTTTCATCATATAAAGATTCCTCTCTGCCATACATATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTTATTTTTCATCATATAAAGATTCCTCTCTGCCATACATATAG  350

seq1  TGTTCTACTTATTGTTTGGAAAACCTCAGTGACAACCTGGAGAGTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACTTATTGTTTGGAAAACCTCAGTGACAACCTGGAGAGTTATAT  400

seq1  CCCCAGGAGTTTGGATCTCTATCTGGCCAAGCAATAAAGCTTCATAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGAGTTTGGATCTCTATCTGGCCAAGCAATAAAGCTTCATAACTC  450

seq1  TTGGCAAATATCAGTTTCCGGCTATATCTACACAGCGAGATTCACAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAATATCAGTTTCCGGCTATATCTACACAGCGAGATTCACAGTGC  500

seq1  TCTAACTACTTTGAGTTACCAAGTAGGACACTTAGAACAGTGGTTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTACTTTGAGTTACCAAGTAGGACACTTAGAACAGTGGTTTTTAT  550

seq1  ATGATACCAGGTAAAATAAAATATGTCCTTACTCTCTTTTATAACTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCAGGTAAAATAAAATATGTCCTTACTCTCTTTTATAACTATTT  600

seq1  TCACTCTTCTTAGTTTGGAATATTTTATAAGTCTATTTTGTTAATTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTCTTAGTTTGGAATATTTTATAAGTCTATTTTGTTAATTGATT  650

seq1  ATGATTCTAGTAGTTGAATATCAATGGAATTGGACAGCTAATGATGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTAGTAGTTGAATATCAATGGAATTGGACAGCTAATGATGCCAT  700

seq1  ATGAC-AAGCACAAGAGTAGATTTATTACAGAGCTTACCCTGAATAAAAT  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAGCACAAGAGTAGATTTATTACAGAGCTTACCCTGAATAAAAT  750

seq1  TTGTGCAGAGATAAGTTTATTAAATGGTCTTTCATCGAAAGATGCTTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGAGATAAGTTTATTAAATGGTCTTTCATCGAAAGATGCTTAAC  800

seq1  TGTGCTTTTATTACA-TTTCATGTATTTCTGGAATTTAAAATAGAAAAAG  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTATTACATTTTCATGTATTTCTGGAATTTAAAATAGAAAAAG  850

seq1  AACACAATAAAATAATTTACTTTGATACTCGAATGCAAATACACTTGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATAAAATAATTTACTTTGATACTCGAATGCAAATACACTTGAAA  900

seq1  AATCAACCA-TCAGGCTAAAATGTTTAAATGA-CCCAAGTATGCTTTTCC  946
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  AATCAACCATTCAGGCTAAAATGTTTAAATGACCCCAAGTATGCTTTTCC  950

seq1  TTTGTGAGTGTACTCAAGTATGTGAAGGGGGAACAGGT-GTGCTCTTCAT  995
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGTGAGTGTACTCAAGTATGTGAAGGGGGAACAGGTGGTGCTCTTCAT  1000

seq1  TTT-GAGTGGAAGGCAGAGGTCAAAGTGGTATAT-CTTTCTGAATTTCAC  1043
      ||| |||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TTTGGAGTGGAAGGCAGAGGTCCAAGTGGTATATCCTTTCTGAATTTCAC  1050

seq1  ATGATCTTATTCCTTAAG-ATAGGTTCCTTTACTAATCCTTGAGCTCACC  1092
      ||||||||||||| |||| ||||||||| |||||||||||  ||||||| 
seq2  ATGATCTTATTCCCTAAGAATAGGTTCC-TTACTAATCCTGAAGCTCACT  1099

seq1  ATTTCTGCTAGACTATGTGACCAA-CCCTCCC-TCTGG-ATTGGATTA-T  1138
      ||||||||||||  | |||||||| | ||||| ||||| |||||| || |
seq2  ATTTCTGCTAGAACAAGTGACCAATCTCTCCCTTCTGGAATTGGAATATT  1149

seq1  TGCCA-TCCATGTACACA-CCCACACTC--ATACCAGGTAGTGGAATTAC  1184
      ||||| |||||||  ||| |||||||||  | ||||| ||||||||||||
seq2  TGCCATTCCATGTGTACACCCCACACTCGTAAACCAGATAGTGGAATTAC  1199

seq1  AC  1186
      ||
seq2  AC  1201


seq1: chr10_113855254_113856432
seq2: B6Ng01-174M10.g_68_1247 (reverse)

seq1  TTCCAATAGAAG-CTTTGTGGCGAACACAAAGATTCAGTCCATAAAGGTA  49
      |||||||||||| |||||||     ||| |||||||||| ||||||||||
seq2  TTCCAATAGAAGCCTTTGTG-----CACCAAGATTCAGT-CATAAAGGTA  44

seq1  CTAAAATGAGATTAAGTTACAGTATTTGATTAATTAATTAATTGGAATTA  99
      |||||||||||||||  ||||||||| || ||||  ||||||||  | ||
seq2  CTAAAATGAGATTAAAGTACAGTATTGGA-TAAT--ATTAATTG--AATA  89

seq1  AGATGTCC-AAACAAA-TAAGTAAGACAATTGTCAAAGAT-CTTA-TTTA  145
      |||||||| ||||||| |||   ||||||||||||||||| |||| ||||
seq2  AGATGTCCAAAACAAATTAATGTAGACAATTGTCAAAGATCCTTATTTTA  139

seq1  AAAAGCCTCATATGGCCCTTCCTC-TATTTGGCAAACTACTAA-CCTGAT  193
      |||||||||||||||||||||||| ||||| |||||||||||| ||||||
seq2  AAAAGCCTCATATGGCCCTTCCTCTTATTTTGCAAACTACTAACCCTGAT  189

seq1  TGATACTGGGTG-AGTAGAAGTTACAGTTTTAAACAGTGTGTCCTTGGTG  242
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGATACTGGGTGAAGTAGAAGTTACAGTTTTAAACAGTGTGTCCTTGGTG  239

seq1  AGACAACAAG-ACCCCAGTGTTACAAAATTTCTTTTCATGAAGGCTGCTC  291
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAAGAACCCCAGTGTTACAAAATTTCTTTTCATGAAGGCTGCTC  289

seq1  TGGATCAACTCAGTGATCTTGAAAC-AGAACAGAAAGACATAAATGGTGA  340
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  TGGATCAACTCAGTGATCCTGAAACAAGAACAGAAAGACATAAATGGTGA  339

seq1  GCAAGGGAAAGGCCTTGGAGAGAAG-AAGGTCTGTTATATGGGTAGGGAA  389
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAAGGGAAAGGCCTTGGAGAGAAGAAAGGTCTGTTATATGGGTAGGGAA  389

seq1  GGGAAG-AAGTGTGAGATGAGACTAATTAAAATGTGTTATGTATATGTAT  438
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAGTGTGAGATGAGACTAATTAAAATGTGTTATGTATATGTAT  439

seq1  GATATTGTCAGAGAATACATTTAATATTATTTTAATTAAATAATGCAATA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTCAGAGAATACATTTAATATTATTTTAATTAAATAATGCAATA  489

seq1  TACTTAGTCATAGGAGGAGAATACTGAAGGGATAAAGAGAAGATATTAAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTCATAGGAGGAGAATACTGAAGGGATAAAGAGAAGATATTAAA  539

seq1  ATGTTCTTTAAGGCCCAAGTATCATAGGTAGCAGTCTTTTGCTAAATTAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTAAGGCCCAAGTATCATAGGTAGCAGTCTTTTGCTAAATTAT  589

seq1  AACTTCAAGTTTAGTAATTAAATAGTTTTGCCTTTACGTGGGGAATATCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAGTTTAGTAATTAAATAGTTTTGCCTTTACGTGGGGAATATCA  639

seq1  AATATTTAATTACATTTGCAAAGACAAGCTTGTTATTATTAGAGTAAAAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAATTACATTTGCAAAGACAAGCTTGTTATTATTAGAGTAAAAC  689

seq1  ACATACATAAAACTTCTACTGAATAATCAGACATGATACTAATGATATAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATAAAACTTCTACTGAATAATCAGACATGATACTAATGATATAA  739

seq1  TATTAAAGCATAAAACATCTTCCATAGAAAAGTTACATTGATTGAATGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGCATAAAACATCTTCCATAGAAAAGTTACATTGATTGAATGAA  789

seq1  AATAAACCACTACTTTAAAAATATATTTTATAATTAATAAAAAATATTCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCACTACTTTAAAAATATATTTTATAATTAATAAAAAATATTCA  839

seq1  TCTATTTTCAAGTAGATTTCTTAGAACTAATTTTGCTAGGAGTTTGTTTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCAAGTAGATTTCTTAGAACTAATTTTGCTAGGAGTTTGTTTC  889

seq1  TGGTCTGAGTGAGTCAAGGTCAATGCTTTGGGCTTCGTTTTTCATCCTAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGAGTGAGTCAAGGTCAATGCTTTGGGCTTCGTTTTTCATCCTAA  939

seq1  TTGGACAGGGCTAAAGTCCAAGGGTTCTAAAGTCCCTTCTTGCTCTGTTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGGGCTAAAGTCCAAGGGTTCTAAAGTCCCTTCTTGCTCTGTTA  989

seq1  GTACAAGAATCTTTTCATTAGTGATTGTATTAACATTGAAATGTGGGTTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGAATCTTTTCATTAGTGATTGTATTAACATTGAAATGTGGGTTT  1039

seq1  AATTATTTTCAAAGACAATGAGAAATATTGCTCATAGGAGCCTCTCTGAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTCAAAGACAATGAGAAATATTGCTCATAGGAGCCTCTCTGAG  1089

seq1  AACAGCACTGCCTCTCAGTGGAGCTTCATATGCCATCAATAAATAGTGGG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACTGCCTCTCAGTGGAGCTTCATATGCCATCAATAAATAGTGGG  1139

seq1  GCCCAACATTTAATTATTTTTAATTAATGAACATGGAATTC  1179
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACATTTAATTATTTTTAATTAATGAACATGGAATTC  1180


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