BAC Information

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BAC

Clone NameB6Ng01-175H10
Chromosome10 (Build37)
Map Location 108,991,518 - 109,179,538
singlet/doubletdoublet
Overlap geneNav3
Upstream geneSyt1, EG368203
Downstream geneLOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175H10.bB6Ng01-175H10.g
ACCGA003263GA003264
length1,1991,155
definitionB6Ng01-175H10.b B6Ng01-175H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,178,344 - 109,179,538)(108,991,518 - 108,992,682)
sequence
gaattcatatgaaggtgaaactttcttcccactcactaatagactacaaa
tccaaacggatgagtgacagcatggtaaaacaaagcaaaataaagaaaca
aacgaacaacaacaacaacagacagtgcctacgttagaaaattacaaact
aaagtaaggactacacatgttacctctcttcttactttgtcttacattcg
ccatttcacatgcaggaaattttcctaagccaaactttcataagggctgt
cgatatttgactttggaagtcataatattcttgtgccctgtctctttcag
caattcacggagcctataatatagtctaaaatcaaataactctaaaaaca
atggtttggctccattgtacattaaaggcagctctctcaaaatacattgg
ctgccttcttagagcagcttagaagaatccacatttgctggcaggaaagc
aacttacatttgtgaaaacagaaacaacaaagactaccaattacattaac
ctttttctattgaatgtctttccccactctcaggaggatttggcatagcg
cagctatgacacaggagagcatgtggcattgtgcccagtcctaaggagca
atatgtgagaggcactgcagcaggtgtcaaacccctgtgacgctgccata
tgccctctatcttcttagctcactcctgctgggtggctttggacttctcc
ctctcttaccactgttgcatctttgctcctccaaggagattatttttccc
ctcctagacaaagcatggcatatcaaaactgaacaggtgcaggcccatag
tgtatgaccttgtgatatgaatccacaggaaataagtcacttcactcaca
gtgaattgatttttagctctgtgtctgagttaacatttcgttttaacttc
agggaaatgatattgatgtgagataaactattactgttcttaaagcttgt
taggagatgcctaacattagaatacatttcttttttcttgctagaaaata
catttttttttatccactgtgattctctaacttaaatattaaagaagata
gttttgaagacattgtaattttgtgctctagctgtggggctacagaactg
cctagtttcttggacttgttcgcagaggacaaggaatcagttataaagca
caggacacactggaattggcatttaactttcagtgaggaagttttcacc

gaattcatgtcagagctggaggaaaggaggtccaggtatatattccatgt
cagtaactatgacttttcagctgagattccaggatttctgttacggaagg
caatacaatcaaaaaagaggtaatatttttcctttgactttctttatgtt
tttgtttccatccttttatgagtatgtttcatctgagtttctacacaagg
agatttggaggagacaaatgcctacaagtgatgttctcattttctttcca
agtcactttccaaatgcatctttggaggtaacatttatagttttgttcct
ggctttcatgggaaagtgaacccctgcactaagacttcctggtgtctccc
ttgtcatttcctttattttacttgagtgtcattcctctaacctcaaggaa
tctgtctattctgcactctttcacacaactgattaactttaacaagtctt
ttttaaaataagagttagaatagtgtatcacaacaggaagaactttttct
tttatgtaccaaaatgatgacagtcttagtcacacagacagcattctgct
tcactcataagttaagtggcatgttctaatttctcctcttggagtttatt
ctgaaatgtgaaactgagcatttctccggttgaatagcaataacgcacag
ttatacagtaattgtgtttggacagtcatggttctttctgctatgcattg
cttcctaatgcttttacaactgtttgaggtaggcgatcttcccataccaa
tagtaatatagaaaaggatttgtatgtcatatgaaaaccattccatactc
tttcatctcaaggatcctgagcacaattactatgcagattcgtttttaaa
cctagactagcttttgaatcactaacccaccttcaaataactacatagga
aaacattttcatgaggccagcaccagtgctaagttggggttttatgcctg
gtgttaccaaagaagtcgtagcaacgaaatatttttaattattatctgta
tgtggccatctttcttttgtgacttttttccatgctagagtgtttcatgt
cttttgcacatgagattattggagtcacctggacctactaagtcttactc
ttgccctgtacttttcgtatgatttgtaacacaagatgaagcctgtgaat
tgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109178344_109179538
seq2: B6Ng01-175H10.b_48_1246 (reverse)

seq1  GGTG-AAACTTCCTCACTG-AAGATAAATGC--AATCCAGTGTG-CCTGT  45
      |||| |||||||||||||| ||| |||||||  | ||||||||| |||||
seq2  GGTGAAAACTTCCTCACTGAAAGTTAAATGCCAATTCCAGTGTGTCCTGT  50

seq1  GGCTTTTATACTGA-TCCTTGTCCTCTGCGAACAAGTCC-AGAAACTAAG  93
       |||||   ||||| |||||||||||||||||||||||| |||||||| |
seq2  -GCTTTATAACTGATTCCTTGTCCTCTGCGAACAAGTCCAAGAAACTAGG  99

seq1  CAGTTCTGTAGCCCCACAGCTAGAGCACAAAATTTACAATTGTC-TCAAA  142
      |||||||||||||||||||||||||||||||| |||||| |||| |||||
seq2  CAGTTCTGTAGCCCCACAGCTAGAGCACAAAA-TTACAA-TGTCTTCAAA  147

seq1  ACTATC-TCTTTAATATTTAAAGTTAGAGAATCACAGTGGATAAAAAAAA  191
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTATCTTCTTTAATATTT-AAGTTAGAGAATCACAGTGGATAAAAAAAA  196

seq1  TGTTATTTTCTAGCAAGAAAAAAGAAATGTATTCTAATTGTTAGGCATCT  241
         |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTATTTTCTAGCAAGAAAAAAGAAATGTATTCTAA-TGTTAGGCATCT  245

seq1  CCTAACAAGCTTTAAGAACAGTAATAGTTTATCTCACATCAATATCATTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAGCTTTAAGAACAGTAATAGTTTATCTCACATCAATATCATTT  295

seq1  CCCTGAAGTTAAAACGAAATGTTAACTCAGACACAGAGCTAAAAATCAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGTTAAAACGAAATGTTAACTCAGACACAGAGCTAAAAATCAAT  345

seq1  TCACTGTGAGTGAAGTGACTTATTTCCTGTGGATTCATATCACAAGGTCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGAGTGAAGTGACTTATTTCCTGTGGATTCATATCACAAGGTCA  395

seq1  TACACTATGGGCCTGCACCTGTTCAGTTTTGATATGCCATGCTTTGTCTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTATGGGCCTGCACCTGTTCAGTTTTGATATGCCATGCTTTGTCTA  445

seq1  GGAGGGGAAAAATAATCTCCTTGGAGGAGCAAAGATGCAACAGTGGTAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAAAATAATCTCCTTGGAGGAGCAAAGATGCAACAGTGGTAAG  495

seq1  AGAGGGAGAAGTCCAAAGCCACCCAGCAGGAGTGAGCTAAGAAGATAGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAAGTCCAAAGCCACCCAGCAGGAGTGAGCTAAGAAGATAGAG  545

seq1  GGCATATGGCAGCGTCACAGGGGTTTGACACCTGCTGCAGTGCCTCTCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGGCAGCGTCACAGGGGTTTGACACCTGCTGCAGTGCCTCTCAC  595

seq1  ATATTGCTCCTTAGGACTGGGCACAATGCCACATGCTCTCCTGTGTCATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCTCCTTAGGACTGGGCACAATGCCACATGCTCTCCTGTGTCATA  645

seq1  GCTGCGCTATGCCAAATCCTCCTGAGAGTGGGGAAAGACATTCAATAGAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGCTATGCCAAATCCTCCTGAGAGTGGGGAAAGACATTCAATAGAA  695

seq1  AAAGGTTAATGTAATTGGTAGTCTTTGTTGTTTCTGTTTTCACAAATGTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTAATGTAATTGGTAGTCTTTGTTGTTTCTGTTTTCACAAATGTA  745

seq1  AGTTGCTTTCCTGCCAGCAAATGTGGATTCTTCTAAGCTGCTCTAAGAAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTTCCTGCCAGCAAATGTGGATTCTTCTAAGCTGCTCTAAGAAG  795

seq1  GCAGCCAATGTATTTTGAGAGAGCTGCCTTTAATGTACAATGGAGCCAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAATGTATTTTGAGAGAGCTGCCTTTAATGTACAATGGAGCCAAA  845

seq1  CCATTGTTTTTAGAGTTATTTGATTTTAGACTATATTATAGGCTCCGTGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTTTAGAGTTATTTGATTTTAGACTATATTATAGGCTCCGTGA  895

seq1  ATTGCTGAAAGAGACAGGGCACAAGAATATTATGACTTCCAAAGTCAAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGAAAGAGACAGGGCACAAGAATATTATGACTTCCAAAGTCAAAT  945

seq1  ATCGACAGCCCTTATGAAAGTTTGGCTTAGGAAAATTTCCTGCATGTGAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACAGCCCTTATGAAAGTTTGGCTTAGGAAAATTTCCTGCATGTGAA  995

seq1  ATGGCGAATGTAAGACAAAGTAAGAAGAGAGGTAACATGTGTAGTCCTTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGAATGTAAGACAAAGTAAGAAGAGAGGTAACATGTGTAGTCCTTA  1045

seq1  CTTTAGTTTGTAATTTTCTAACGTAGGCACTGTCTGTTGTTGTTGTTGTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTGTAATTTTCTAACGTAGGCACTGTCTGTTGTTGTTGTTGTT  1095

seq1  CGTTTGTTTCTTTATTTTGCTTTGTTTTACCATGCTGTCACTCATCCGTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTTTCTTTATTTTGCTTTGTTTTACCATGCTGTCACTCATCCGTT  1145

seq1  TGGATTTGTAGTCTATTAGTGAGTGGGAAGAAAGTTTCACCTTCATATGA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGTAGTCTATTAGTGAGTGGGAAGAAAGTTTCACCTTCATATGA  1195

seq1  ATTC  1195
      ||||
seq2  ATTC  1199


seq1: chr10_108991518_108992682
seq2: B6Ng01-175H10.g_68_1222

seq1  GAATTCATGTCAGAGCTGGAGGAAAGGAGGTCCAGGTATATATTCCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCAGAGCTGGAGGAAAGGAGGTCCAGGTATATATTCCATGT  50

seq1  CAGTAACTATGACTTTTCAGCTGAGATTCCAGGATTTCTGTTACGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTATGACTTTTCAGCTGAGATTCCAGGATTTCTGTTACGGAAGG  100

seq1  CAATACAATCAAAAAAGAGGTAATATTTTTCCTTTGACTTTCTTTATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAATCAAAAAAGAGGTAATATTTTTCCTTTGACTTTCTTTATGTT  150

seq1  TTTGTTTCCATCCTTTTATGAGTATGTTTCATCTGAGTTTCTACACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCATCCTTTTATGAGTATGTTTCATCTGAGTTTCTACACAAGG  200

seq1  AGATTTGGAGGAGACAAATGCCTACAAGTGATGTTCTCATTTTCTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGAGGAGACAAATGCCTACAAGTGATGTTCTCATTTTCTTTCCA  250

seq1  AGTCACTTTCCAAATGCATCTTTGGAGGTAACATTTATAGTTTTGTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTTCCAAATGCATCTTTGGAGGTAACATTTATAGTTTTGTTCCT  300

seq1  GGCTTTCATGGGAAAGTGAACCCCTGCACTAAGACTTCCTGGTGTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCATGGGAAAGTGAACCCCTGCACTAAGACTTCCTGGTGTCTCCC  350

seq1  TTGTCATTTCCTTTATTTTACTTGAGTGTCATTCCTCTAACCTCAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTCCTTTATTTTACTTGAGTGTCATTCCTCTAACCTCAAGGAA  400

seq1  TCTGTCTATTCTGCACTCTTTCACACAACTGATTAACTTTAACAAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTATTCTGCACTCTTTCACACAACTGATTAACTTTAACAAGTCTT  450

seq1  TTTTAAAATAAGAGTTAGAATAGTGTATCACAACAGGAAGAACTTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATAAGAGTTAGAATAGTGTATCACAACAGGAAGAACTTTTTCT  500

seq1  TTTATGTACCAAAATGATGACAGTCTTAGTCACACAGACAGCATTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTACCAAAATGATGACAGTCTTAGTCACACAGACAGCATTCTGCT  550

seq1  TCACTCATAAGTTAAGTGGCATGTTCTAATTTCTCCTCTTGGAGTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCATAAGTTAAGTGGCATGTTCTAATTTCTCCTCTTGGAGTTTATT  600

seq1  CTGAAATGTGAAACTGAGCATTTCTCCGGTTGAATAGCAATAACGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTGAAACTGAGCATTTCTCCGGTTGAATAGCAATAACGCACAG  650

seq1  TTATACAGTAATTGTGTTTGGACAGTCATGGTTCTTTCTGCTATGCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGTAATTGTGTTTGGACAGTCATGGTTCTTTCTGCTATGCATTG  700

seq1  CTTCCTAATGCTTTTACAACTGTTTGAGGTAGGCGATCTTCCCATACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAATGCTTTTACAACTGTTTGAGGTAGGCGATCTTCCCATACCAA  750

seq1  TAGTAATATAGAAAAGGATTTGTATGTCATATGAAAACCATTCCATACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATATAGAAAAGGATTTGTATGTCATATGAAAACCATTCCATACTC  800

seq1  TTTCATCTCAAGGATCCTGAGCACAATTACTATGCAGATTCGTTTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCAAGGATCCTGAGCACAATTACTATGCAGATTCGTTTTTAAA  850

seq1  CCTAGACTAGC-TTTGAATCACTAACCCACCTTCAAATAACTACATAGGA  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACTAGCTTTTGAATCACTAACCCACCTTCAAATAACTACATAGGA  900

seq1  AAACATTTTCATGAGGCCAGCACCAGTGCTAAGT--GGGGTTTATGCCTG  947
      ||||||||||||||||||||||||||||||||||  ||| ||||||||||
seq2  AAACATTTTCATGAGGCCAGCACCAGTGCTAAGTTGGGGTTTTATGCCTG  950

seq1  GTGTTACCAAAGAAGTCGTAGCAACGAAATA-TTTTAATTATTATCTGGT  996
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  GTGTTACCAAAGAAGTCGTAGCAACGAAATATTTTTAATTATTATCT-GT  999

seq1  ATGTGGCCATCTTTCTTTTGTTGACTTTTTTTCCATGCTTAGGAAGTGTT  1046
      |||||||||||||||||||| |||| |||||||||||| |||  ||||||
seq2  ATGTGGCCATCTTTCTTTTG-TGAC-TTTTTTCCATGC-TAG--AGTGTT  1044

seq1  TCCATGTTCTATTTGCACAATAGAAGGATA-TGGAGTCACCTGGGACCTA  1095
      | |||| ||| ||||||||  |||    || ||||||||||| |||||||
seq2  T-CATG-TCT-TTTGCACATGAGA---TTATTGGAGTCACCT-GGACCTA  1087

seq1  CTAAGGTCTAACCTCTGCCCCTGTACTTTTCTGTATGATATTGTAACAAA  1145
      |||| |||| | ||||  ||||||||||||| ||||||| |||||||| |
seq2  CTAA-GTCTTA-CTCTTGCCCTGTACTTTTC-GTATGAT-TTGTAACACA  1133

seq1  GGATGAAG-CTGTG-ATTGTTA  1165
       ||||||| ||||| |||||||
seq2  AGATGAAGCCTGTGAATTGTTA  1155


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