BAC Information

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BAC

Clone NameB6Ng01-176A08
Chromosome10 (Build37)
Map Location 53,255,172 - 53,419,180
singlet/doubletdoublet
Overlap geneMcm9, Asf1a, LOC100042554, 4930589M24Rik
Upstream geneZfa, Slc35f1, Pln, EG432460
Downstream geneMan1a, LOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176A08.bB6Ng01-176A08.g
ACCGA003670GA003671
length1,1701,121
definitionB6Ng01-176A08.b B6Ng01-176A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,255,172 - 53,256,345)(53,418,030 - 53,419,180)
sequence
gaattccaggttagtcaggactgtacaatgagatcctgctcaacattccc
tccctccctccccaaaggagcaagcctgctgtgcatacttatagatgagg
ctggagaaatggcgcaatgggcaaagtgctcactgtgctggcatggggac
ttgagtgtgcctcaccagcacccatgtaaaagccaagaaaggtggatgtc
tgtaagaccggccttggtgggtgaagcgggctgggcgggaggaaggtgga
tccaggatgctcttaggcgagtcagtagctgaaaagacagccttcaggtt
cagtgagagaccttgcctgaaaaaataaggtggaacaatttgagctagac
acaggcatcagcctgttgcacatgctcaagactggtgagtgtattcatga
actctcatgtgggtactcccttccccaaggtctactggaaccccagaaag
aaacaatgctgtaacattaggaatatattcaggatcattctatccttgaa
cgttcttaaacaatcgcagaaatacattatgtaaactatagtgttaatgt
ctttgagcaggtataagtgaatatgaaatacatttaaaaattactgcttg
tataaatgttttgtaagctcttcaagatgcctgaagactcctaagtatta
aatatgttctaacagtttaccatgtttcagaaagtcagtcaatttgggaa
ttcatttttaaatgctaaagaaaattgggtttttaagtgtttttttttct
gtatgaatatcacaaagtaaatattaactaagcacacgtttttgagcacg
tttcatgccccaaagtcctcttgtcaataaaagaatcagtgactgttaga
aatgcagaccctgaagcatgtctgtaaggctagaagcctaccttcctacc
actgctgggatccaaacacaaggactttagaagcacacagaaagacagag
tttagtcatctctgcccaccagacagggaaacttctccgttttatttatt
atacttatgtaataagtaatgtcataacacgctacataatacattcttct
tctgagccatatccaaccacgttcttggttttataaaagacacgcatgag
aaagcctattcaggaatacgttcctatactgaatgccatgccgatgtgac
agcttacagctggcattccg

gaattcttctccctttttcaaaaccgtgtaggtaatatatgctttgaata
ctagaaatgatgaacacgatgctgcgattcaggccctcaaagatgcccat
gaagaagaaatccaacaaatccttgcagaaacaagagaaaaaatactgct
atacaaaagcaaggttaccgaagagttagaccttaggagaaagattcaag
ttttggaagcgtctttagaagatcacatgaaaatgaagcaggaggctttg
accgagtttgaagcctataagcgcagagttgaggacatgcagctttgtgc
agaggcccagcatgttcagcgcatagtaaccatgtcccgggaggtcgaag
agattaggaagaaattcgaagaaaggttgcggagctttgggcagctccag
gttcagtttgaaaatgacaaacaggcggctctggaagatctgagaaccac
tcacaggctcgaagtccaagagctgttgaagtcacagcagaaccacagct
cctccgtgaaactggggcaagagaaagctgagggactgcacaggatggag
gtggaggccttgaacaacacggtcaaggagctgagactcgaaaagaaaca
gctcatcgaggagtatgagggcaagctgagcaaggcccaagtgttttatg
agcgtgagcttgataacttgaaaaggtcacagctcttcacagccgaaagc
ttgcaggccagcagggacaaggaggccgatcttcgcaaagagttccaggg
acaagaagccattttacgaaaaaccataggaaaactgaagacagagctgc
agatggtgcagatgaagctagcagccttcttgacaaatgccaaaagttgc
agatggctctggccacagcagagaacaatgtacaggtgagaggtggccat
ctagggtttctctttctttacatgtgtgtgtgtgtgagcatgcgtgttat
gtgtaatgtgggtgcgtgcccatatatgtatgtggaaactgagtgacatg
gtgtttctagaatactcctcatctcctgttggagccagtctttgctgaaa
cgagaactcatggcatcgactgttcaagtagcagtcctcaggttctcgat
tctgccctccctagctctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53255172_53256345
seq2: B6Ng01-176A08.b_45_1214

seq1  GAATTCCAGGTTAGTCAGGACTGTACAATGAGATCCTGCTCAACATTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTAGTCAGGACTGTACAATGAGATCCTGCTCAACATTCCC  50

seq1  TCCCTCCCTCCCCAAAGGAGCAAGCCTGCTGTGCATACTTATAGATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCCAAAGGAGCAAGCCTGCTGTGCATACTTATAGATGAGG  100

seq1  CTGGAGAAATGGCGCAATGGGCAAAGTGCTCACTGTGCTGGCATGGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAATGGCGCAATGGGCAAAGTGCTCACTGTGCTGGCATGGGGAC  150

seq1  TTGAGTGTGCCTCACCAGCACCCATGTAAAAGCCAAGAAAGGTGGATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTGCCTCACCAGCACCCATGTAAAAGCCAAGAAAGGTGGATGTC  200

seq1  TGTAAGACCGGCCTTGGTGGGTGAAGCGGGCTGGGCGGGAGGAAGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACCGGCCTTGGTGGGTGAAGCGGGCTGGGCGGGAGGAAGGTGGA  250

seq1  TCCAGGATGCTCTTAGGCGAGTCAGTAGCTGAAAAGACAGCCTTCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATGCTCTTAGGCGAGTCAGTAGCTGAAAAGACAGCCTTCAGGTT  300

seq1  CAGTGAGAGACCTTGCCTGAAAAAATAAGGTGGAACAATTTGAGCTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGACCTTGCCTGAAAAAATAAGGTGGAACAATTTGAGCTAGAC  350

seq1  ACAGGCATCAGCCTGTTGCACATGCTCAAGACTGGTGAGTGTATTCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATCAGCCTGTTGCACATGCTCAAGACTGGTGAGTGTATTCATGA  400

seq1  ACTCTCATGTGGGTACTCCCTTCCCCAAGGTCTACTGGAACCCCAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATGTGGGTACTCCCTTCCCCAAGGTCTACTGGAACCCCAGAAAG  450

seq1  AAACAATGCTGTAACATTAGGAATATATTCAGGATCATTCTATCCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGCTGTAACATTAGGAATATATTCAGGATCATTCTATCCTTGAA  500

seq1  CGTTCTTAAACAATCGCAGAAATACATTATGTAAACTATAGTGTTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTAAACAATCGCAGAAATACATTATGTAAACTATAGTGTTAATGT  550

seq1  CTTTGAGCAGGTATAAGTGAATATGAAATACATTTAAAAATTACTGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCAGGTATAAGTGAATATGAAATACATTTAAAAATTACTGCTTG  600

seq1  TATAAATGTTTTGTAAGCTCTTCAAGATGCCTGAAGACTCCTAAGTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGTTTTGTAAGCTCTTCAAGATGCCTGAAGACTCCTAAGTATTA  650

seq1  AATATGTTCTAACAGTTTACCATGTTTCAGAAAGTCAGTCAATTTGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCTAACAGTTTACCATGTTTCAGAAAGTCAGTCAATTTGGGAA  700

seq1  TTCATTTTTAAATGCTAAAGAAAATTGGGTTTTTAAGTG-TTTTTTTTCT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCATTTTTAAATGCTAAAGAAAATTGGGTTTTTAAGTGTTTTTTTTTCT  750

seq1  GTATGAATATCACAAAGTAAATATTAACTAAGCACACGTTTTTGAGCACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATATCACAAAGTAAATATTAACTAAGCACACGTTTTTGAGCACG  800

seq1  TTTCATGCCCCAAAGTCCTCTTGTCAATAAAAGAATCAGTGACTGTTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCCCCAAAGTCCTCTTGTCAATAAAAGAATCAGTGACTGTTAGA  850

seq1  AATGCAGACCCTGAAGCATGTCTGTAAGGCTAGAAGCCTACCTTCCTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGACCCTGAAGCATGTCTGTAAGGCTAGAAGCCTACCTTCCTACC  900

seq1  ACTGCTGGGATCCAAACACAAGGACTTTAGAAGCACACAGAAAGACAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGGATCCAAACACAAGGACTTTAGAAGCACACAGAAAGACAGAG  950

seq1  TTTAGTCATCTCTGCCCACCAGACAGGGAAACTTCTCCGTTTTATTTTAT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTAGTCATCTCTGCCCACCAGACAGGGAAACTTCTCCGTTTTA-TTTAT  999

seq1  TATTACTTATGTAATAAGTAATGTCAT-ACACGCTACAT-ATACATTCTT  1047
      || |||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TA-TACTTATGTAATAAGTAATGTCATAACACGCTACATAATACATTCTT  1048

seq1  CTTCTGAGCCATATCCCAACCCAACGTTCTTGGTTTTATAAAAAGACAAA  1097
      |||||||||||||| ||||||  |||||||||||||||| |||||||  |
seq2  CTTCTGAGCCATAT-CCAACC--ACGTTCTTGGTTTTAT-AAAAGAC--A  1092

seq1  CAGATGAGAA--GCTA-TCAGGGATCACGTTTCCATACTG-ATGCCATTG  1143
      |  |||||||   ||| ||||| || ||||| | |||||| |||||| ||
seq2  CGCATGAGAAAGCCTATTCAGGAAT-ACGTTCCTATACTGAATGCCA-TG  1140

seq1  CAGATGTGACAGGGCTACAGCTGGCCTTCCG  1174
      | ||||||||| |  |||||||||| |||||
seq2  CCGATGTGACA-GCTTACAGCTGGCATTCCG  1170


seq1: chr10_53418030_53419180
seq2: B6Ng01-176A08.g_64_1184 (reverse)

seq1  GCCAGAGCTAGGGA-GGCAGAAACTGGGAAACCCTGGAGGACACTGGCTA  49
      |||||||||||||| ||||||| |   || | ||| ||||||    ||||
seq2  GCCAGAGCTAGGGAGGGCAGAATC---GAGAACCT-GAGGAC---TGCTA  43

seq1  TCCTGAACAGCTGAAATGACAAATGAAGTCCTCTGGTTTCAGCAAAAGAC  99
       | |||||||  |  ||| |  ||| |||  ||| |||||||| ||||| 
seq2  -CTTGAACAGTCG--ATGCC--ATG-AGT--TCTCGTTTCAGC-AAAGA-  83

seq1  CCTGCCTCAACATAGAAGATGGAGAGTAATCCTAGAAAACACCCAATGTC  149
       ||| ||| | | || |||||  |||| || |||| |||||||  |||||
seq2  -CTGGCTCCA-ACAGGAGATGAGGAGT-ATTCTAG-AAACACC--ATGTC  127

seq1  AACCTCAGTTTCCACATACATATATGGGCACGCACCCACATTAACACATA  199
      |  ||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  A--CTCAGTTTCCACATACATATATGGGCACGCACCCACATT-ACACAT-  173

seq1  AACACGCATGCTCACACACCACACACATGTAAAGAAAGAAGAAACCCTAG  249
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  AACACGCATGCTCACACA-CACACACATGTAAAGAAAG-AGAAACCCTAG  221

seq1  ATGGCCCACCTCTCACCTGTACATTGTTCTCTGCTGTGGCCAGAGCCATC  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGG-CCACCTCTCACCTGTACATTGTTCTCTGCTGTGGCCAGAGCCATC  270

seq1  TGCAACTTTTGGCATTTGTCAAGAAGGCTGCTAGCTTCATCCTGCACCAT  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCAACTTTTGGCATTTGTCAAGAAGGCTGCTAGCTTCAT-CTGCACCAT  319

seq1  CTGCAGCTCTGTCTTCAGTTTTCCTATGGTTTTTCGTAAAATGGCTTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTCTGTCTTCAGTTTTCCTATGGTTTTTCGTAAAATGGCTTCTT  369

seq1  GTCCCTGGAACTCTTTGCGAAGATCGGCCTCCTTGTCCCTGCTGGCCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGAACTCTTTGCGAAGATCGGCCTCCTTGTCCCTGCTGGCCTGC  419

seq1  AAGCTTTCGGCTGTGAAGAGCTGTGACCTTTTCAAGTTATCAAGCTCACG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCGGCTGTGAAGAGCTGTGACCTTTTCAAGTTATCAAGCTCACG  469

seq1  CTCATAAAACACTTGGGCCTTGCTCAGCTTGCCCTCATACTCCTCGATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAACACTTGGGCCTTGCTCAGCTTGCCCTCATACTCCTCGATGA  519

seq1  GCTGTTTCTTTTCGAGTCTCAGCTCCTTGACCGTGTTGTTCAAGGCCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTTTTCGAGTCTCAGCTCCTTGACCGTGTTGTTCAAGGCCTCC  569

seq1  ACCTCCATCCTGTGCAGTCCCTCAGCTTTCTCTTGCCCCAGTTTCACGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATCCTGTGCAGTCCCTCAGCTTTCTCTTGCCCCAGTTTCACGGA  619

seq1  GGAGCTGTGGTTCTGCTGTGACTTCAACAGCTCTTGGACTTCGAGCCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGGTTCTGCTGTGACTTCAACAGCTCTTGGACTTCGAGCCTGT  669

seq1  GAGTGGTTCTCAGATCTTCCAGAGCCGCCTGTTTGTCATTTTCAAACTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTCTCAGATCTTCCAGAGCCGCCTGTTTGTCATTTTCAAACTGA  719

seq1  ACCTGGAGCTGCCCAAAGCTCCGCAACCTTTCTTCGAATTTCTTCCTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGCTGCCCAAAGCTCCGCAACCTTTCTTCGAATTTCTTCCTAAT  769

seq1  CTCTTCGACCTCCCGGGACATGGTTACTATGCGCTGAACATGCTGGGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCGACCTCCCGGGACATGGTTACTATGCGCTGAACATGCTGGGCCT  819

seq1  CTGCACAAAGCTGCATGTCCTCAACTCTGCGCTTATAGGCTTCAAACTCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAAGCTGCATGTCCTCAACTCTGCGCTTATAGGCTTCAAACTCG  869

seq1  GTCAAAGCCTCCTGCTTCATTTTCATGTGATCTTCTAAAGACGCTTCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCCTCCTGCTTCATTTTCATGTGATCTTCTAAAGACGCTTCCAA  919

seq1  AACTTGAATCTTTCTCCTAAGGTCTAACTCTTCGGTAACCTTGCTTTTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAATCTTTCTCCTAAGGTCTAACTCTTCGGTAACCTTGCTTTTGT  969

seq1  ATAGCAGTATTTTTTCTCTTGTTTCTGCAAGGATTTGTTGGATTTCTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGTATTTTTTCTCTTGTTTCTGCAAGGATTTGTTGGATTTCTTCT  1019

seq1  TCATGGGCATCTTTGAGGGCCTGAATCGCAGCATCGTGTTCATCATTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCATCTTTGAGGGCCTGAATCGCAGCATCGTGTTCATCATTTCT  1069

seq1  AGTATTCAAAGCATATATTACCTACACGGTTTTGAAAAAGGGAGAAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCAAAGCATATATTACCTACACGGTTTTGAAAAAGGGAGAAGAAT  1119

seq1  TC  1151
      ||
seq2  TC  1121


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