BAC Information

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BAC

Clone NameB6Ng01-176O08
Chromosome10 (Build37)3 (Build37)
Map Location 109,663,479 - 109,664,02522,668,356 - 22,669,471
singlet/doubletsingletsinglet
Overlap geneLOC100042506
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176O08.bB6Ng01-176O08.g
ACCGA004313GA004314
length8291,118
definitionB6Ng01-176O08.b B6Ng01-176O08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,663,479 - 109,664,025)(22,668,356 - 22,669,471)
sequence
gaattctcccactattattgtgtgaggtgcaatatgtgctttgagcttta
ctaaagtttctttaatgaatgtggctgcccttgtatttggagcatagata
ttcagaattgagagttcctcttggaggattttacctttgatgagaacgaa
gtgcccctccttgtcttttttgatgactttgggttggaagtcaatcttat
cagatattaggatggctactccagcttgtttcttcataccatttgcttgg
aaaattgttttccagccttttattctgaggtagtgtctatctttttctct
gagatgtgtctcctgtaaacagcaaaatgttgggtcttgtttgtgtagtc
agtttgttagtctatgtctttttattggggagttgagaccattgatgtta
agagatattaaggaaaagtaattgttgcttcctgttatttttgttgttaa
agttggcattctgttcttgtggctgtcttcttttaggtttgttgagggat
taccttcttgttttttctagggcattgttcccgttcttgtattggttttt
ttctgttattaacctttgaagggctggattcgtggagagataatgtgtga
atttggttttgtcgtggaatactttggtttctccatctatggtaattgag
agtttggctgggtatagtagcctgggctggaatttgtgttctcttagtgt
ctgtataacatctgtccaggctcttctggctttcatagtctctggtgaaa
aatctgggtgtaattctgataggcttgcctttgtatgttacttgaccttt
tcccttaccgctttagtattctatcttta

gaattcttgccttcccctggttccctgcaaaagataatatcctcttggct
accttcagataaagatgtagtactcttggttcctccagcatcaattctgc
ctgcttgctgccatgtttcacagcaagatgttaaccagcttcattaaatg
tttttctttaagagagcatgctctggtcatattgttccttcatagcaatg
aaatccaaagacacacacacacacacacacacacacacacacacacacac
acacacacacaaagagagacacagagagagacagagaaacagagagaaga
gaggtacagagacagtcagagacagagacagagacagagaggcagagaca
gagcagcagccgagacagatgtacagagggtttgtggtttcagagcgctg
aagtgtggacagctttgaaagtagggaaagtagtgatgggaatggaaaaa
aagtgaacaatgaacactgctaatgtcattgcttactctgaacagtggca
ttccaggcacactcagtttgtggtgatgcatgatggtgtgtctatgcaca
aactccagggacttgatctgacgaggggcagagaaggcattcaagacaca
agggcacagagacatgtagagagaaaactgatgttgggtggtcttggctc
tcagatgaagaaacaatagtatcctagaagctcagaatgcttatgaaata
cagtcagacaaggaggcagggttattgcatacagatgaacaggatgtggt
gttattacacataaagaataaggaagtgtttatgaggtacaaatagacca
aagagacagacatagcaaatcttagtaggcacagtttctgtaaatttcca
gaagaaaaaaaggctatgcttgatattttctgtatgcaccatgagcaccc
gcaaaatactagaaagaagcccttgcaatttccttctgagactcattccc
ataggaaaagttttgccatttctccatgggatctggagactattggttta
ttgacatggctatgacaatgtcaggtgaaacttcattcaggcaggacttc
tctcaatacaggaaattccctgctttctcagatgatcataatagcctatg
atcaatgtaccttctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109663479_109664025
seq2: B6Ng01-176O08.b_330_875 (reverse)

seq1  TAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATACA  50
      ||||||||||||||| ||||| ||||||| ||||||||||||||||||||
seq2  TAAAGATAGAATACT-AAAGCGGTAAGGG-AAAAGGTCAAGTAACATACA  48

seq1  AAGGCAAGCCTATCAGAATTACA-CCAGATTTTTCACCAGAGACTATGAA  99
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGGCAAGCCTATCAGAATTACACCCAGATTTTTCACCAGAGACTATGAA  98

seq1  AGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAAT  148

seq1  TCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGA  198

seq1  GAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCAC  248

seq1  GAATCCAGCCCTTCAAAGGTTAATAACAGAAAAAAACCAATGCAAGAACG  299
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATCCAGCCCTTCAAAGGTTAATAACAGAAAAAAACCAATACAAGAACG  298

seq1  GGAACAATGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAA  348

seq1  AGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACGAAAATAACAG  399
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAG  398

seq1  GAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAAC  448

seq1  TCCCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCC  499
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCCCAATAAAAAGACATAGACTAACAAACTGACTACACAAACAAGACCC  498

seq1  AACATTTTGCTGTTTACAGGAGACACATCTCAGAGAAAAAGATAGACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGCTGTTTACAGGAGACACATCTCAGAGAAAAAGATAGACA  546


seq1: chr3_22668356_22669471
seq2: B6Ng01-176O08.g_64_1181

seq1  GAATTCTTGCCTTCCCCTGGTTCCCTGCAAAAGATAATATCCTCTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTTCCCCTGGTTCCCTGCAAAAGATAATATCCTCTTGGCT  50

seq1  ACCTTCAGATAAAGATGTAGTACTCTTGGTTCCTCCAGCATCAATTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGATAAAGATGTAGTACTCTTGGTTCCTCCAGCATCAATTCTGC  100

seq1  CTGCTTGCTGCCATGTTTCACAGCAAGATGTTAACCAGCTTCATTAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTGCCATGTTTCACAGCAAGATGTTAACCAGCTTCATTAAATG  150

seq1  TTTTTCTTTAAGAGAGCATGCTCTGGTCATATTGTTCCTTCATAGCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTAAGAGAGCATGCTCTGGTCATATTGTTCCTTCATAGCAATG  200

seq1  AAATCCAAAGACACACACACACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAAGACACACACACACACACACACACACACACACACACACACAC  250

seq1  ACACACACACAAAGAGAGACACAGAGAGAGACAGAGAAACAGAGAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAAGAGAGACACAGAGAGAGACAGAGAAACAGAGAGAAGA  300

seq1  GAGGTACAGAGACAGTCAGAGACAGAGACAGAGACAGAGAGGCAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACAGAGACAGTCAGAGACAGAGACAGAGACAGAGAGGCAGAGACA  350

seq1  GAGCAGCAGCCGAGACAGATGTACAGAGGGTTTGTGGTTTCAGAGCGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGCCGAGACAGATGTACAGAGGGTTTGTGGTTTCAGAGCGCTG  400

seq1  AAGTGTGGACAGCTTTGAAAGTAGGGAAAGTAGTGATGGGAATGGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGACAGCTTTGAAAGTAGGGAAAGTAGTGATGGGAATGGAAAAA  450

seq1  AAGTGAACAATGAACACTGCTAATGTCATTGCTTACTCTGAACAGTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACAATGAACACTGCTAATGTCATTGCTTACTCTGAACAGTGGCA  500

seq1  TTCCAGGCACACTCAGTTTGTGGTGATGCATGATGGTGTGTCTATGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCACACTCAGTTTGTGGTGATGCATGATGGTGTGTCTATGCACA  550

seq1  AACTCCAGGGACTTGATCTGACGAGGGGCAGAGAAGGCATTCAAGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGGGACTTGATCTGACGAGGGGCAGAGAAGGCATTCAAGACACA  600

seq1  AGGGCACAGAGACATGTAGAGAGAAAACTGATGTTGGGTGGTCTTGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGAGACATGTAGAGAGAAAACTGATGTTGGGTGGTCTTGGCTC  650

seq1  TCAGATGAAGAAACAATAGTATCCTAGAAGCTCAGAATGCTTATGAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAAGAAACAATAGTATCCTAGAAGCTCAGAATGCTTATGAAATA  700

seq1  CAGTCAGACAAGGAGGCAGGGTTATTGCATACAGATGAACAGGATGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGACAAGGAGGCAGGGTTATTGCATACAGATGAACAGGATGTGGT  750

seq1  GTTATTACACATAAAGAATAAGGAAGTGTTTATGAGGTACAAATAGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTACACATAAAGAATAAGGAAGTGTTTATGAGGTACAAATAGACCA  800

seq1  AAGAGACAGACATAGCAAATCTTAGTAGGCACAGTTTCTGTAAATTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAGACATAGCAAATCTTAGTAGGCACAGTTTCTGTAAATTTCCA  850

seq1  GAAGAAAAAAAGGCTATGCTTGATATTTTCTGTATGCACCATGAGCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAAAGGCTATGCTTGATATTTTCTGTATGCACCATGAGCACCC  900

seq1  GCAAAATACTAGAAAGAAGCCCTTGCAATTTCCTTCTGAGACTCATTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATACTAGAAAGAAGCCCTTGCAATTTCCTTCTGAGACTCATTCCC  950

seq1  ATAGGAAAAGTTTTGCCATTTCTCCAT-GGATCT-GAGACTATTGGTTTA  998
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  ATAGGAAAAGTTTTGCCATTTCTCCATGGGATCTGGAGACTATTGGTTTA  1000

seq1  TTGACATGGCTATGACAATGTCA-GTGAAAC-TCATTCAAGCAGGACTTC  1046
      ||||||||||||||||||||||| ||||||| ||||||| ||||||||||
seq2  TTGACATGGCTATGACAATGTCAGGTGAAACTTCATTCAGGCAGGACTTC  1050

seq1  TCTC-ATACAGAAATTTCCCTTGCTTTCTCCAGATTGAATCAT-ATAG-C  1093
      |||| |||||| || ||||| |||||||| |||||   ||||| |||| |
seq2  TCTCAATACAGGAAATTCCC-TGCTTTCT-CAGAT--GATCATAATAGCC  1096

seq1  TATGATCAATGTACTTTTCTATA  1116
      ||||||||||||||  |||||||
seq2  TATGATCAATGTAC-CTTCTATA  1118


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