BAC Information

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BAC

Clone NameB6Ng01-177L16
Chromosome10 (Build37)
Map Location 81,545,434 - 81,664,109
singlet/doubletdoublet
Overlap gene4933439G19Rik, BC024063, AU041133
Upstream geneCreb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115
Downstream geneLOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177L16.bB6Ng01-177L16.g
ACCGA004918GA004919
length1,088766
definitionB6Ng01-177L16.b B6Ng01-177L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,663,030 - 81,664,109)(81,545,434 - 81,546,189)
sequence
gaattcagagacactcactgcagatgcacagatcagagcagatagcatca
ccagaaaaacagataacacaggttctggatgctaattacacattcttcac
tcttggtacacatgaccttaactagacctgatgtgagcaggctggatttt
tgatgatatggtcactgtcttcttttaccctttaacagcagatttgctat
ctttctggtgacttccactgtctccttgccctcaaccattttccttgatg
gctgggagccagagtaactgaagaggaatatacaatgattcagtagatca
ctcagcaatgatagacatgtacacttcataattttgtttcagccaactag
gattcaaagtctcaaattcttcaaaccacacaggcctatttaaaggcagt
tcagaaagctctgcagacaaatgggttgtttgtttgtttgtttgttttgc
tctcaaccacaaatcacctggaggcaaatttttaaaattgagagtaaata
agtgcaagaatacccctggtgtttccactttttatgttttaatcattgtt
tgtaatgttctatgtgatctttcaattatatcctggccttgaggattata
atgaattatagagattaatattccatttcctaaagaacttctttacaaca
tcatctatttatatacaaagaggcactcccataacagcaaaagtttgtat
aagggaagagcacaccacagaaggattctctcgggatagaggtacagtcc
aaagagattttggaacatgtataaatgcaggtatggcatcaaaggcacaa
gaacaaagtgagtgatatccatttgccattagtattttttaactctggga
ataaccttaactattacaaccatgacagtcaaagaagagtacaaatagga
cattccctgcacattttcatgttcatctaagcaagatgtggcacatgaat
cttgttaggcggtagtgtggtagttcctgcctccgaaggagtaagtgggg
aggggaggccaagttaatgcatcgtcttgctaattcttctgcatgaaatc
ggagtgagaggtggtgatggagtatgagcaatacacaa
gaattcttgtaaataaatgggagaatacagccagaggcagagataagtac
gagatgaacccttaggcatgtgagaagaggagggaggggagatggaggag
gcagaccaagaagtcaggcatgtaaagggtagataacaaaaaacaaaacc
aaccaaacaaaaaatcctccaccccgcctctgagatatacgtggggagga
catatggggtaaagggtagccaagatcctagtctggagaagttcacggta
ggggccaggcatgcaggccaacattgtaacaggtagagactgagatatgc
agagggaacctggcagatagcatttttgataaataggcgccaaatttatt
tgtttctgggtttgagacataacactctctgcccaggaggaagacgggga
cgtgcctactgagtgcaggaaaagtgcagggaccactttgcagtccagga
acaagttctacagcaaagcctgccttatgatctaggccccgctcttggcc
tgtagtggaagcccggagatgggaaacacgatgtctcttagggacactgc
tccttgtcactcaggcctcagtagccaatcagaacttcgagacgagcctt
cagtcatagtgggcgggcacttcctgtccgccatattaccccgctttgtt
gtgaatctgaggaagcacttattgacccatcttgccggtagttgagcgga
gagtgaggcgaaacttgcaattccccgccattgggtgagcgaggccgccg
tcccacgccggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_81663030_81664109
seq2: B6Ng01-177L16.b_47_1134 (reverse)

seq1  TTGTGTATTCCTCATACTCATACAC--ACTCTCACTCCCGATTTCACTGC  48
      ||||||||| |||||||||   |||   |||||||| ||||||||| |||
seq2  TTGTGTATTGCTCATACTCCATCACCACCTCTCACT-CCGATTTCA-TGC  48

seq1  AGAAGGAAATAAGCAAGACGATGCATTAACTTGCCCTCC---CTCCACTT  95
      |||||  ||| |||||||||||||||||||||| |||||   | ||||||
seq2  AGAAG--AATTAGCAAGACGATGCATTAACTTGGCCTCCCCTCCCCACTT  96

seq1  ACTCCTCCGGA-GCAGGAACTA-CACACTAACG-CTAAC-AGATTCATGT  141
      |||||| |||| |||||||||| ||||||| || ||||| ||||||||||
seq2  ACTCCTTCGGAGGCAGGAACTACCACACTACCGCCTAACAAGATTCATGT  146

seq1  GCCACATCTTGCTTAGATGAACATGAAAATTGTGCA-GGAATGTCCTATT  190
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  GCCACATCTTGCTTAGATGAACATGAAAA-TGTGCAGGGAATGTCCTATT  195

seq1  TGTACTC-TCTTTGACTGTCATGGTTGT-ATAGTTAAGGTTATTCCCAGA  238
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  TGTACTCTTCTTTGACTGTCATGGTTGTAATAGTTAAGGTTATTCCCAGA  245

seq1  GTT-AAAAATACTAATGGCAAATGGATATCACTCACTTTGTTCTTGTGCC  287
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAATACTAATGGCAAATGGATATCACTCACTTTGTTCTTGTGCC  295

seq1  TTTGATGCCATACCTGCATTTATACATGTTCCAAAATCTCTTTGGACTGT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCCATACCTGCATTTATACATGTTCCAAAATCTCTTTGGACTGT  345

seq1  ACCTCTATCCCGAGAGAATCCTTCTGTGGTGTGCTCTTCCCTTATACAAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTATCCCGAGAGAATCCTTCTGTGGTGTGCTCTTCCCTTATACAAA  395

seq1  CTTTTGCTGTTATGGGAGTGCCTCTTTGTATATAAATAGATGATGTTGTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTGTTATGGGAGTGCCTCTTTGTATATAAATAGATGATGTTGTA  445

seq1  AAGAAGTTCTTTAGGAAATGGAATATTAATCTCTATAATTCATTATAATC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTCTTTAGGAAATGGAATATTAATCTCTATAATTCATTATAATC  495

seq1  CTCAAGGCCAGGATATAATTGAAAGATCACATAGAACATTACAAACAATG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGCCAGGATATAATTGAAAGATCACATAGAACATTACAAACAATG  545

seq1  ATTAAAACATAAAAAGTGGAAACACCAGGGGTATTCTTGCACTTATTTAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACATAAAAAGTGGAAACACCAGGGGTATTCTTGCACTTATTTAC  595

seq1  TCTCAATTTTAAAAATTTGCCTCCAGGTGATTTGTGGTTGAGAGCAAAAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTTTAAAAATTTGCCTCCAGGTGATTTGTGGTTGAGAGCAAAAC  645

seq1  AAACAAACAAACAAACAACCCATTTGTCTGCAGAGCTTTCTGAACTGCCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAACCCATTTGTCTGCAGAGCTTTCTGAACTGCCT  695

seq1  TTAAATAGGCCTGTGTGGTTTGAAGAATTTGAGACTTTGAATCCTAGTTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGGCCTGTGTGGTTTGAAGAATTTGAGACTTTGAATCCTAGTTG  745

seq1  GCTGAAACAAAATTATGAAGTGTACATGTCTATCATTGCTGAGTGATCTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACAAAATTATGAAGTGTACATGTCTATCATTGCTGAGTGATCTA  795

seq1  CTGAATCATTGTATATTCCTCTTCAGTTACTCTGGCTCCCAGCCATCAAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCATTGTATATTCCTCTTCAGTTACTCTGGCTCCCAGCCATCAAG  845

seq1  GAAAATGGTTGAGGGCAAGGAGACAGTGGAAGTCACCAGAAAGATAGCAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGTTGAGGGCAAGGAGACAGTGGAAGTCACCAGAAAGATAGCAA  895

seq1  ATCTGCTGTTAAAGGGTAAAAGAAGACAGTGACCATATCATCAAAAATCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGTTAAAGGGTAAAAGAAGACAGTGACCATATCATCAAAAATCC  945

seq1  AGCCTGCTCACATCAGGTCTAGTTAAGGTCATGTGTACCAAGAGTGAAGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTCACATCAGGTCTAGTTAAGGTCATGTGTACCAAGAGTGAAGA  995

seq1  ATGTGTAATTAGCATCCAGAACCTGTGTTATCTGTTTTTCTGGTGATGCT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAATTAGCATCCAGAACCTGTGTTATCTGTTTTTCTGGTGATGCT  1045

seq1  ATCTGCTCTGATCTGTGCATCTGCAGTGAGTGTCTCTGAATTC  1080
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCTGATCTGTGCATCTGCAGTGAGTGTCTCTGAATTC  1088

seq1: chr10_81545434_81546189
seq2: B6Ng01-177L16.g_69_834

seq1  GAATTCTTGTAAATAAATGGGAGAATACAGCCAGAGGCAGAGATAAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAAATAAATGGGAGAATACAGCCAGAGGCAGAGATAAGTAC  50

seq1  GAGATGAACCCTTAGGCATGTGAGAAGAGGAGGGAGGGGAGATGGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAACCCTTAGGCATGTGAGAAGAGGAGGGAGGGGAGATGGAGGAG  100

seq1  GCAGACCAAGAAGTCAGGCATGTAAAGGGTAGATAACAAAAAACAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCAAGAAGTCAGGCATGTAAAGGGTAGATAACAAAAAACAAAACC  150

seq1  AACCAAACAAAAAATCCTCCACCCCGCCTCTGAGATATACGTGGGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACAAAAAATCCTCCACCCCGCCTCTGAGATATACGTGGGGAGGA  200

seq1  CATATGGGGTAAAGGGTAGCCAAGATCCTAGTCTGGAGAAGTTCACGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGGGTAAAGGGTAGCCAAGATCCTAGTCTGGAGAAGTTCACGGTA  250

seq1  GGGGCCAGGCATGCAGGCCAACATTGTAACAGGTAGAGACTGAGATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAGGCATGCAGGCCAACATTGTAACAGGTAGAGACTGAGATATGC  300

seq1  AGAGGGAACCTGGCAGATAGCATTTTTGATAAATAGGCGCCAAATTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAACCTGGCAGATAGCATTTTTGATAAATAGGCGCCAAATTTATT  350

seq1  TGTTTCTGGGTTTGAGACATAACACTCTCTGCCCAGGAGGAAGACGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGGGTTTGAGACATAACACTCTCTGCCCAGGAGGAAGACGGGGA  400

seq1  CGTGCCTACTGAGTGCAGGAAAAGTGCAGGGACCACTTTGCAGTCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTACTGAGTGCAGGAAAAGTGCAGGGACCACTTTGCAGTCCAGGA  450

seq1  ACAAGTTCTACAGCAAAGCCTGCCTTATGATCTAGG-CCCGCTCTTGGCC  499
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAAGTTCTACAGCAAAGCCTGCCTTATGATCTAGGCCCCGCTCTTGGCC  500

seq1  TGTAGTGGAAG-CCGGAGATGGGAAACACGATGTCTCTTAGGGACACTGC  548
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGAAGCCCGGAGATGGGAAACACGATGTCTCTTAGGGACACTGC  550

seq1  TCC-TGTCACTCAGGCCTCAGTAGCCAATCAGAACTTCGAGACGAGCCTT  597
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCACTCAGGCCTCAGTAGCCAATCAGAACTTCGAGACGAGCCTT  600

seq1  CAGTCATAGTGGGCGGGCACTTCCTGTCCGCCATATTA-CCCGCTTTGTT  646
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGTCATAGTGGGCGGGCACTTCCTGTCCGCCATATTACCCCGCTTTGTT  650

seq1  GTGAATCTGAGGAAAGCAC-TATTGA-CCATC-TGCCGGTAGTTGAGCGG  693
      |||||||||||| |||||| |||||| ||||| |||||||||||||||||
seq2  GTGAATCTGAGG-AAGCACTTATTGACCCATCTTGCCGGTAGTTGAGCGG  699

seq1  AGAGTGAGGCG-AACTTGGAA-TCCGCGCCAT--GGTGAGCGAGGCCGCC  739
      ||||||||||| |||||| || ||| ||||||  ||||||||||||||||
seq2  AGAGTGAGGCGAAACTTGCAATTCCCCGCCATTGGGTGAGCGAGGCCGCC  749

seq1  GTCCCCACG-CGGGGAGG  756
      || |||||| ||||||||
seq2  GT-CCCACGCCGGGGAGG  766