BAC Information

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BAC

Clone NameB6Ng01-178A16
Chromosome10 (Build37)
Map Location 71,666,706 - 71,813,588
singlet/doubletdoublet
Overlap geneLOC100040505
Upstream geneTfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
Downstream geneZwint, LOC432471, LOC544705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178A16.bB6Ng01-178A16.g
ACCGA005145GA005146
length1,201715
definitionB6Ng01-178A16.b B6Ng01-178A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,666,706 - 71,667,749)(71,812,874 - 71,813,588)
sequence
gaattcacccatgaagttaacatttttctcagattttctttgaggagttc
tttcagtcttaatacttttcatgttaagtttgcctatccagtttttgtat
ttcttatttccattatgataaactgagtactttagaaaaattctgttact
ttgaaattatccaacttgttggtgtaagatccttgtacttgagacttttc
tcttgctgggaaaaaccaccatgactaagacaacttatagaagaaagatt
catttaggccttcagtccagagggttaaggtccatcagagcaggagccat
ggcacacagagcaggaagccaagagctcacgccagagcacaacacaaagc
aaagagcgaactgcaactggtgttaggcttttaatctccaagtttgcccc
acccccatcatatactccctccagagatataactcggcacaatccctgca
agccatgctaccaactggggaccaaatactcaaaacccagagagtatgac
aggcatttctcatttaaaccacccaagccgctttatgataattttacctc
tgtggatcagctgtaatgtcttctggcatttctagtttgttgttactatt
gttctgttctctctttgttttcttaatcctaatgtatgtttgttgactat
accaatttattgtctttaatgttcaaggaaaatccctgagattctgatgc
aaatatattctgacctatttattttctttaataatcaagaaaaatatatg
aggttctgaatcaactagccacacactagttaaaatctggtcacttagat
caagaagaaattggaaataatcatgaaaatatataagctgatatttatac
tgggttattaataatttgctatttatatggctaaaataaaatgaatcaga
taaacatacccaagcattctcattatgcaactttaatttcatgtttgaga
acaataaatactagcaacctgtctcttaatttgaagaacaaaggaagatt
tattaaaatattcttttttaaagcatctttgaaaagatggttctcatttg
agtactaacttcttttagtttggtttcttcatatttattcatgactgaga
gcttacaatgggcttttccttttttctaatagaaagaaagttctaatttc
agcataggcaagaatggaattgcacgatctccttatttcacattccctaa
g

gaattccaggttgtgttggactgtctcctgaaaccatgaactagaacaaa
ctttttatttcttgggttgcttcttattatgttacagtgacaagaaatgc
cacgaatctatgaaacccttcagtcactggttggtatttcagcacctacc
atgatgaactgccacaaaaacctaaaacattaacagaaggtgagcccagc
cagccaagtcctagccagaaacactttatatgctgatagtgaggatgtgt
tacatccataaactagaaaacaaatgaacaagtaattaagaaaggctggt
acagttttccattgtggcatttgaagcaaaagcctagacagtcgagttca
atgtctcttaatctggtctctcctgaagaaaatgcttattgaaatttacc
aactaaatctcaacagctcttgtcattcaaatactttttccatttccaac
tgattcttggaaccagggaattatcatgcagatggagttgtttggtgaag
acttaatgtgttttctttttagaagctttccctgaggaatttcatgagaa
ccaagaggaatgcaaagcataaatgagttgttagcattcagagctcttct
ctgcctccattctttgctaccagggtgtgcaataaacctcactatcccca
ctcaattaaaggaggaggaagagaaagaggggaatgagaaagaagaggag
gaggaggagggagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_71666706_71667749
seq2: B6Ng01-178A16.b_179_1229

seq1  TTGAAATTATCCAACTTGTTGGTGTAAGATCCTTGTACTTGAGACTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTATCCAACTTGTTGGTGTAAGATCCTTGTACTTGAGACTTTTC  50

seq1  TCTTGCTGGGAAAAACCACCATGACTAAGACAACTTATAGAAGAAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGGGAAAAACCACCATGACTAAGACAACTTATAGAAGAAAGATT  100

seq1  CATTTAGGCCTTCAGTCCAGAGGGTTAAGGTCCATCAGAGCAGGAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGCCTTCAGTCCAGAGGGTTAAGGTCCATCAGAGCAGGAGCCAT  150

seq1  GGCACACAGAGCAGGAAGCCAAGAGCTCACGCCAGAGCACAACACAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAGAGCAGGAAGCCAAGAGCTCACGCCAGAGCACAACACAAAGC  200

seq1  AAAGAGCGAACTGCAACTGGTGTTAGGCTTTTAATCTCCAAGTTTGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCGAACTGCAACTGGTGTTAGGCTTTTAATCTCCAAGTTTGCCCC  250

seq1  ACCCCCATCATATACTCCCTCCAGAGATATAACTCGGCACAATCCCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCATCATATACTCCCTCCAGAGATATAACTCGGCACAATCCCTGCA  300

seq1  AGCCATGCTACCAACTGGGGACCAAATACTCAAAACCCAGAGAGTATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCTACCAACTGGGGACCAAATACTCAAAACCCAGAGAGTATGAC  350

seq1  AGGCATTTCTCATTTAAACCACCCAAGCCGCTTTATGATAATTTTACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTCTCATTTAAACCACCCAAGCCGCTTTATGATAATTTTACCTC  400

seq1  TGTGGATCAGCTGTAATGTCTTCTGGCATTTCTAGTTTGTTGTTACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATCAGCTGTAATGTCTTCTGGCATTTCTAGTTTGTTGTTACTATT  450

seq1  GTTCTGTTCTCTCTTTGTTTTCTTAATCCTAATGTATGTTTGTTGACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTCTCTCTTTGTTTTCTTAATCCTAATGTATGTTTGTTGACTAT  500

seq1  ACCAATTTATTGTCTTTAATGTTCAAGGAAAATCCCTGAGATTCTGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTATTGTCTTTAATGTTCAAGGAAAATCCCTGAGATTCTGATGC  550

seq1  AAATATATTCTGACCTATTTATTTTCTTTAATAATCAAGAAAAATATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTCTGACCTATTTATTTTCTTTAATAATCAAGAAAAATATATG  600

seq1  AGGTTCTGAATCAACTAGCCACACACTAGTTAAAATCTGGTCACTTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGAATCAACTAGCCACACACTAGTTAAAATCTGGTCACTTAGAT  650

seq1  CAAGAAGAAATTGGAAATAATCATGAAAATATATAAGCTGATATTTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAAATTGGAAATAATCATGAAAATATATAAGCTGATATTTATAC  700

seq1  T-GGTTATTAATAATTTGCTATTTATATGGCTAAAATAAAATGAATCAGA  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTATTAATAATTTGCTATTTATATGGCTAAAATAAAATGAATCAGA  750

seq1  TAAACATACCCAAGCATTCTCATTATGCAACTTTAATTTCATGTTTGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATACCCAAGCATTCTCATTATGCAACTTTAATTTCATGTTTGAGA  800

seq1  ACAATAAATACTAGCAACCCTGTCTCTTAATTTGAAGAACAAAGGAAAGA  849
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  ACAATAAATACTAGCAA-CCTGTCTCTTAATTTGAAGAACAAAGG-AAGA  848

seq1  TTTATTAAAATATTC-TTTTTAAAGCATCTTTGAAAAGATGGTTCCTCAT  898
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TTTATTAAAATATTCTTTTTTAAAGCATCTTTGAAAAGATGGTT-CTCAT  897

seq1  TTGAAGTACTAACTTCTTTTAATTTTGGTTTCTTCATATTTA-TCATGAA  947
      ||| |||||||||||||||| | ||||||||||||||||||| ||||| |
seq2  TTG-AGTACTAACTTCTTTT-AGTTTGGTTTCTTCATATTTATTCATG-A  944

seq1  CTGAGAGCTTACATTGG--TTTTC--TTTTTCTAAATAGAAAGAAAATTC  993
      ||||||||||||| |||  |||||  ||||||| |||||||||||| |||
seq2  CTGAGAGCTTACAATGGGCTTTTCCTTTTTTCT-AATAGAAAGAAAGTTC  993

seq1  TATTTTCAGCATAAGCAAG-ATGGAA-TGGACAATCT-CTTATTTCA---  1037
      || |||||||||| ||||| |||||| || || |||| |||||||||   
seq2  TAATTTCAGCATAGGCAAGAATGGAATTGCACGATCTCCTTATTTCACAT  1043

seq1  -TCCTAAG  1044
        ||||||
seq2  TCCCTAAG  1051


seq1: chr10_71812874_71813588
seq2: B6Ng01-178A16.g_59_773 (reverse)

seq1  TACTCCCTCCTCCTCCTCCTCTTCTTTCTCATTCCCCTCTTTCTCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTCCTCCTCCTCCTCTTCTTTCTCATTCCCCTCTTTCTCTTCCT  50

seq1  CCTCCTTTAATTGAGTGGGGATAGTGAGGTTTATTGCACACCCTGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTAATTGAGTGGGGATAGTGAGGTTTATTGCACACCCTGGTAGC  100

seq1  AAAGAATGGAGGCAGAGAAGAGCTCTGAATGCTAACAACTCATTTATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGAGGCAGAGAAGAGCTCTGAATGCTAACAACTCATTTATGCT  150

seq1  TTGCATTCCTCTTGGTTCTCATGAAATTCCTCAGGGAAAGCTTCTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCCTCTTGGTTCTCATGAAATTCCTCAGGGAAAGCTTCTAAAAA  200

seq1  GAAAACACATTAAGTCTTCACCAAACAACTCCATCTGCATGATAATTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACATTAAGTCTTCACCAAACAACTCCATCTGCATGATAATTCCC  250

seq1  TGGTTCCAAGAATCAGTTGGAAATGGAAAAAGTATTTGAATGACAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCAAGAATCAGTTGGAAATGGAAAAAGTATTTGAATGACAAGAGC  300

seq1  TGTTGAGATTTAGTTGGTAAATTTCAATAAGCATTTTCTTCAGGAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGATTTAGTTGGTAAATTTCAATAAGCATTTTCTTCAGGAGAGAC  350

seq1  CAGATTAAGAGACATTGAACTCGACTGTCTAGGCTTTTGCTTCAAATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAAGAGACATTGAACTCGACTGTCTAGGCTTTTGCTTCAAATGCC  400

seq1  ACAATGGAAAACTGTACCAGCCTTTCTTAATTACTTGTTCATTTGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAAAACTGTACCAGCCTTTCTTAATTACTTGTTCATTTGTTTTC  450

seq1  TAGTTTATGGATGTAACACATCCTCACTATCAGCATATAAAGTGTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATGGATGTAACACATCCTCACTATCAGCATATAAAGTGTTTCTG  500

seq1  GCTAGGACTTGGCTGGCTGGGCTCACCTTCTGTTAATGTTTTAGGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGACTTGGCTGGCTGGGCTCACCTTCTGTTAATGTTTTAGGTTTTT  550

seq1  GTGGCAGTTCATCATGGTAGGTGCTGAAATACCAACCAGTGACTGAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGTTCATCATGGTAGGTGCTGAAATACCAACCAGTGACTGAAGGG  600

seq1  TTTCATAGATTCGTGGCATTTCTTGTCACTGTAACATAATAAGAAGCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGATTCGTGGCATTTCTTGTCACTGTAACATAATAAGAAGCAAC  650

seq1  CCAAGAAATAAAAAGTTTGTTCTAGTTCATGGTTTCAGGAGACAGTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAATAAAAAGTTTGTTCTAGTTCATGGTTTCAGGAGACAGTCCAA  700

seq1  CACAACCTGGAATTC  715
      |||||||||||||||
seq2  CACAACCTGGAATTC  715


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