BAC Information

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BAC

Clone NameB6Ng01-178O01
Chromosome10 (Build37)
Map Location 105,942,293 - 105,943,377
singlet/doubletsinglet
Overlap genePpfia2
Upstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178O01.bB6Ng01-178O01.g
ACCGA005745GA005746
length1,0861,210
definitionB6Ng01-178O01.b B6Ng01-178O01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaccaggctacatgagcagtgatttctgcttacaatacatggc
aaccaattctaaatataggttgctgtatatcgtcttgtaatactacagaa
atatttgagaccacttggtccttgttgatgccaatatccaatttttgaca
tgtggaacttgtgatgaaaagtgagggtttagtaatagtgccaaatgctg
tgtgtgctcaacctacttcatatattgcactaaggacagaaattctacag
gaaaaatgattctttagagataagcaccatagaaaagtcttccttgaaaa
gcctatggcattgttgcgtttgtgttgctatttaacttctagaaacaaat
caaatttggaaaactataaaacatataaaactataacatataaagataca
ttttggttttgcaatattctttatatatagtaaaaatttgttcataatta
ttaaatgctcatgatctatcaaatactgaattatatcacactgaaatact
cagaatttcccccacgaggttaatttttctactatttcatattttcaagt
aaggagtaaagaaaatggttacagatgagatgaataaggaagctaaaata
taagaccaggccatctaactatatcgaattatgttacctttctcactttg
cattatttgcaaagctggaaacgtgagagatttcactgaaagcctataat
tttagtctctctccaactctgtgtaatctgatatctagggctaacatttg
ttctggaacaggtgagtctgagctgggcagctatgggtcttaaagatatg
ttacattgtctgaatagtttatgttcaaagataggatccttaaagacaat
agtgactgttctctgttctttactgactaaactgctcagaaccacctttg
tgaatggcagttccatgtcaaccacagtgaccaggtgtgcacctgcaact
tcgtttcatgttctccttcctgttttgagtttaaccaagatagctaagat
tttttatcagtcaatgtcaaagtcatacaggatgatattcttttatacaa
agccattggattttaaatactcattgagattttcca

gaattccttaaagaggaaataaatcccatagaaaaatctatgaatgcaaa
cagtagacagaaatgaaagaaaatcattcaagacttaatcattgttaata
gaatcaatatagaaaacccaaacaggacaattatgaaaatcaaaaattta
ggaacgccaacgggaacctcagacacaatattaacaaataatataagagg
tggaagagataatttcagacactgaagacacggtaagataaatggatact
ttcgtcaaagaaattgtgaaatctaaaataatcttgacacaaaatataca
gtacatctagaacattatgaaaagattaaatgtaaaagtagtaggaatta
agggtaaagaagaaaccaaggtcacaatctcagaaattgttttattttta
ataagttattttatttatttacattccagttgcaataaccagggacacag
aagatccaaattagaaattatttccaatagaaaattctctcatccaatgg
atataatataaagttctcttggtatacaataatcataaatactgaaatca
cataacaaaaaagctgtattaaaagctgcaaaggagaaagcaccaagtga
catatgaaggcagatctaacagaataatacttaccttatcatggggacta
taaaagctagaagtgttcagacagatgatctatagactctagagaccaca
catgccagcccagagtactatgccccaaaaaacattcaatcacaatagaa
aaagaaaataagacatctcatgataaaactatatttaaacaatatttagc
tacaaatctagccccatgtaaggtgtaagaagcaaaccctccaacctaaa
gcgacaaatcaccccaaagaacacacaaaatcaaataatccaagatcaac
aaacggaaaatggaagacaccaccattagcaccaccactaccacaatggc
acacaacacaacaacaaacagatttaaaaaaaaatcactactcatgttac
ttatcaacatcaagttcttaattacctagttaaagactcagactaacata
tgaattcaataaaaaaagatccatcatctgcagcaccaggaaacaaaata
ttaacatatagaatagacatcatttcatggttagaatgctaaggaattcc
aagccacctaacaaaatggaacgttcgaccttaacacatatatccctgtg
tgagaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_105942293_105943377
seq2: B6Ng01-178O01.b_44_1129

seq1  GAATTCACACCAGGCTACATGAGCAGTGATTTCTGCTTACAATACATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCAGGCTACATGAGCAGTGATTTCTGCTTACAATACATGGC  50

seq1  AACCAATTCTAAATATAGGTTGCTGTATATCGTCTTGTAATACTACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTCTAAATATAGGTTGCTGTATATCGTCTTGTAATACTACAGAA  100

seq1  ATATTTGAGACCACTTGGTCCTTGTTGATGCCAATATCCAATTTTTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAGACCACTTGGTCCTTGTTGATGCCAATATCCAATTTTTGACA  150

seq1  TGTGGAACTTGTGATGAAAAGTGAGGGTTTAGTAATAGTGCCAAATGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACTTGTGATGAAAAGTGAGGGTTTAGTAATAGTGCCAAATGCTG  200

seq1  TGTGTGCTCAACCTACTTCATATATTGCACTAAGGACAGAAATTCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTCAACCTACTTCATATATTGCACTAAGGACAGAAATTCTACAG  250

seq1  GAAAAATGATTCTTTAGAGATAAGCACCATAGAAAAGTCTTCCTTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGATTCTTTAGAGATAAGCACCATAGAAAAGTCTTCCTTGAAAA  300

seq1  GCCTATGGCATTGTTGCGTTTGTGTTGCTATTTAACTTCTAGAAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGGCATTGTTGCGTTTGTGTTGCTATTTAACTTCTAGAAACAAAT  350

seq1  CAAATTTGGAAAACTATAAAACATATAAAACTATAACATATAAAGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGGAAAACTATAAAACATATAAAACTATAACATATAAAGATACA  400

seq1  TTTTGGTTTTGCAATATTCTTTATATATAGTAAAAATTTGTTCATAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTGCAATATTCTTTATATATAGTAAAAATTTGTTCATAATTA  450

seq1  TTAAATGCTCATGATCTATCAAATACTGAATTATATCACACTGAAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTCATGATCTATCAAATACTGAATTATATCACACTGAAATACT  500

seq1  CAGAATTTCCCCCACGAGGTTAATTTTTCTACTATTTCATATTTTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTCCCCCACGAGGTTAATTTTTCTACTATTTCATATTTTCAAGT  550

seq1  AAGGAGTAAAGAAAATGGTTACAGATGAGATGAATAAGGAAGCTAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTAAAGAAAATGGTTACAGATGAGATGAATAAGGAAGCTAAAATA  600

seq1  TAAGACCAGGCCATCTAACTATATCGAATTATGTTACCTTTCTCACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCAGGCCATCTAACTATATCGAATTATGTTACCTTTCTCACTTTG  650

seq1  CATTATTTGCAAAGCTGGAAACGTGAGAGATTTCACTGAAAGCCTATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGCAAAGCTGGAAACGTGAGAGATTTCACTGAAAGCCTATAAT  700

seq1  TTTAGTCTCTCTCCAACTCTGTGTAATCTGATATCTAGGGCTAACATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTCTCTCCAACTCTGTGTAATCTGATATCTAGGGCTAACATTTG  750

seq1  TTCTGGAACAGGTGAGTCTGAGCTGGGCAGCTATGGGTCTTAAAGATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAACAGGTGAGTCTGAGCTGGGCAGCTATGGGTCTTAAAGATATG  800

seq1  TTACATTGTCTGAATAGTTTATGTTCAAAGATAGGATCCTTAAAGACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGTCTGAATAGTTTATGTTCAAAGATAGGATCCTTAAAGACAAT  850

seq1  AGTGACTGTTCTCTGTTCTTTACTGACTAAACTGCTCAGAACCACCTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGTTCTCTGTTCTTTACTGACTAAACTGCTCAGAACCACCTTTG  900

seq1  TGAATGGCAGTTCCATGTCAACCACAGTGACCAGGTGTGCACCTGCAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCAGTTCCATGTCAACCACAGTGACCAGGTGTGCACCTGCAACT  950

seq1  TCGTTTCATGTTCTCCTTCCTGTTTTGAGTTTAACCAAGATAGCTAAAGA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TCGTTTCATGTTCTCCTTCCTGTTTTGAGTTTAACCAAGATAGCTAAGAT  1000

seq1  TTTTTATCAGTCAAATGTCAAAGTCATACAGGATGATAT--CTTTATACA  1048
      |||||||||||| ||||||||||||||||||||||||||   ||||||||
seq2  TTTTTATCAGTC-AATGTCAAAGTCATACAGGATGATATTCTTTTATACA  1049

seq1  AAGCCATTGGATTTTAAATACTCATTGAGATTTTCCA  1085
      |||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTGGATTTTAAATACTCATTGAGATTTTCCA  1086


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