BAC Information

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BAC

Clone NameB6Ng01-179E07
Chromosome10 (Build37)
Map Location 93,966,566 - 94,132,288
singlet/doubletdoublet
Overlap geneTmcc3
Upstream geneHal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
Downstream geneEG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179E07.bB6Ng01-179E07.g
ACCGA006037GA006038
length1,0041,068
definitionB6Ng01-179E07.b B6Ng01-179E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,966,566 - 93,967,563)(94,131,251 - 94,132,288)
sequence
gaattcatagacgtctgcttctcagtgggaagtagaaattcaaaatcaag
ctgtataagatgagcagcatcctcttgggtctttccttcatttctccctt
gattatctccaagggtcattttggggaaccgaagggagtattgtcattgc
ttttaaccctaactacattttgcatttctgatcgtttctgacaattccgc
cctgtgtgtgttggtgttcacacatgtgatccagtacggttgcctgtgga
ttactctaaatcttgtgtgtgatttagccgttctctccttttggaaaaga
cagtgctcttatggggtcagaacagagggaaatcagaaatatgtatgggt
tatgtatgagcctcagctgatctgcgaagaagcagtgagaaattacagag
ccagagaaaacccttcgaaacttggcaccaaggcagagatggagcatttg
acgagacttgcagagaagtgtgtctcagtgtcacaggagaggtgactcct
cattttgggaaaacttaaaaacactaaaccaaaaaatccaaaagtgctta
gaaatggcagaaaagacatagaggaagccttcagatgaaggctaaagtta
aagtgactgccattttgactgctttaaagccctattcagattccccctac
ccccaaaaggtagaacaaaaaaacaaaagtttagcatatttaaatattcc
tcatggggttttaatgagtagtgagtatttactaaaggccttgggagaag
ctttggccaagtgggatacagaatgactcatggtgtggcccgcaaccctg
ttgtttccagattcctggagctcttttcctggggcagactctcgccagct
ctagcacagactcgatctcgatctcgcagtgggaaagcagaggcttgtaa
atgtgaagttgtcatccaaggaggtatacctagggggagcttttagagtc
acagtgaccagcaaatttgtatattactttgtcatcctgggatgaacacc
ttaa
gaattctcttcaggctggctgctcaacacatacatgctatcaaagcagct
tttagggaaatggttcgttcagaattatgtctgaaaaaggggacctccgt
ctttgttagataactagataatttccaaatgaattcttgagacactgagc
tgctgaaagcagtgttgaaaagaaagggtgaatgtcactcatgccttatc
tggtagagagtgtttataagttcacctgtaggaaaagcactgtgatttaa
agtgaattaatgtttgtgttaactcttcattgctaaggtttggtttctaa
taaaaactttaagatacagaccacatagagtcctcaacaattattagaag
catacaagaaatcaggtgcgatggcacacacctgtaatgccagcacttta
aaaagtgatgcagtagggttccaagttcaagactagtcagaaataaacag
tcacacacacacacacacacacacacaactggatgtaagcatagggtcat
aggtatgaatacaaggatactaccaagatgggaaggagcctagctcctgc
acatcctctgtgaaaggcaacatttattacaattgtgtttgcctttattg
cacgtcatcctcagataaataaaatagagggcttttcatttccagtcagt
tgtcatagcaacttttgactacccagagaggaaggaatttcttgtatctt
taagccctgactccagaggaactaaaaaggaagcaaagacttaaaaggaa
cattaaagaagggtttgcaagatgtgataaaattagatcttctgttgtgc
agtacttttcctgtaaatgtaatatacatttcccctgattatttatatac
ccgcctttatagatcctcaggactctacagcattagactaattaataact
aaccaactttatcgcttattaatacgccaggtcacgcagaaacatcaata
taccctaatgttttctttctactgctcccaacatttgtaagagcagccat
gattttttgttacaccttttaagatgtgggaaagtggaatggtgaatgga
taaagcttggttcactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93966566_93967563
seq2: B6Ng01-179E07.b_43_1046

seq1  GAATTCATAGACGTCTGCTTCTCAGTGGGAAGTAGAAATTCAAAATCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGACGTCTGCTTCTCAGTGGGAAGTAGAAATTCAAAATCAAG  50

seq1  CTGTATAAGATGAGCAGCATCCTCTTGGGTCTTTCCTTCATTTCTCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAGATGAGCAGCATCCTCTTGGGTCTTTCCTTCATTTCTCCCTT  100

seq1  GATTATCTCCAAGGGTCATTTTGGGGAACCGAAGGGAGTATTGTCATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTCCAAGGGTCATTTTGGGGAACCGAAGGGAGTATTGTCATTGC  150

seq1  TTTTAACCCTAACTACATTTTGCATTTCTGATCGTTTCTGACAATTCCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCCTAACTACATTTTGCATTTCTGATCGTTTCTGACAATTCCGC  200

seq1  CCTGTGTGTGTTGGTGTTCACACATGTGATCCAGTACGGTTGCCTGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGTGTTGGTGTTCACACATGTGATCCAGTACGGTTGCCTGTGGA  250

seq1  TTACTCTAAATCTTGTGTGTGATTTAGCCGTTCTCTCCTTTTGGAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTAAATCTTGTGTGTGATTTAGCCGTTCTCTCCTTTTGGAAAAGA  300

seq1  CAGTGCTCTTATGGGGTCAGAACAGAGGGAAATCAGAAATATGTATGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCTTATGGGGTCAGAACAGAGGGAAATCAGAAATATGTATGGGT  350

seq1  TATGTATGAGCCTCAGCTGATCTGCGAAGAAGCAGTGAGAAATTACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGAGCCTCAGCTGATCTGCGAAGAAGCAGTGAGAAATTACAGAG  400

seq1  CCAGAGAAAACCCTTCGAAACTTGGCACCAAGGCAGAGATGGAGCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAAACCCTTCGAAACTTGGCACCAAGGCAGAGATGGAGCATTTG  450

seq1  ACGAGACTTGCAGAGAAGTGTGTCTCAGTGTCACAGGAGAGGTGACTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGACTTGCAGAGAAGTGTGTCTCAGTGTCACAGGAGAGGTGACTCCT  500

seq1  CATTTTGGGAAAACTTAAAAACACTAAACCAAAAAATCCAAAAGTGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGGAAAACTTAAAAACACTAAACCAAAAAATCCAAAAGTGCTTA  550

seq1  GAAATGGCAGAAAAGACATAGAGGAAGCCTTCAGATGAAGGCTAAAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCAGAAAAGACATAGAGGAAGCCTTCAGATGAAGGCTAAAGTTA  600

seq1  AAGTGACTGCCATTTTGACTGC-TTAAAGCCCTATTCAGATTCCCCCTAC  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGTGACTGCCATTTTGACTGCTTTAAAGCCCTATTCAGATTCCCCCTAC  650

seq1  CCCCAAAAGGTAGAACAAAAAAACAAAAGTTTAGCATATTTAAATATTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAGGTAGAACAAAAAAACAAAAGTTTAGCATATTTAAATATTCC  700

seq1  TCATGGGGTTTTAATGAGTAGTGAGTATTTACTAAAGGCCTTGGGAGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGTTTTAATGAGTAGTGAGTATTTACTAAAGGCCTTGGGAGAAG  750

seq1  C-TTGGCCAAGTGGGATACAGAATGACTCATGGTGTGGCCCGCAACCCTG  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCAAGTGGGATACAGAATGACTCATGGTGTGGCCCGCAACCCTG  800

seq1  TTGTTTCCAGATTCCTGGAGCTC-TTTCCTGGGGCAGACTCTCGCCAGCT  847
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGTTTCCAGATTCCTGGAGCTCTTTTCCTGGGGCAGACTCTCGCCAGCT  850

seq1  CTAGCACAGACTCGATCTCGATCTCGCAGTGGGAAAGCAGAGGCTTGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACAGACTCGATCTCGATCTCGCAGTGGGAAAGCAGAGGCTTGTAA  900

seq1  ATGTGAAGTTGTCATCCAAGGAGGTATACCTA-GGGGAGC-TTTAGAGTC  945
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  ATGTGAAGTTGTCATCCAAGGAGGTATACCTAGGGGGAGCTTTTAGAGTC  950

seq1  ACAGTGACCAGC-AATTTGTATATTACTTTGTCATCCTTGGATGAACACC  994
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  ACAGTGACCAGCAAATTTGTATATTACTTTGTCATCCTGGGATGAACACC  1000

seq1  TTTA  998
      || |
seq2  TTAA  1004

seq1: chr10_94131251_94132288
seq2: B6Ng01-179E07.g_68_1135 (reverse)

seq1  TTAGTGAAC--AGCTTTATCCATTCA-CATT-CACTTT-CCACATCTTAA  45
      | |||||||  ||||||||||||||| |||| |||||| |||||||||||
seq2  TAAGTGAACCAAGCTTTATCCATTCACCATTCCACTTTCCCACATCTTAA  50

seq1  AAGGTGTA--CAAAAATCAT-GCTGCTCTTAC-AATGTTGGGAGCAGTAG  91
      ||||||||   ||||||||| ||||||||||| |||||||||||||||||
seq2  AAGGTGTAACAAAAAATCATGGCTGCTCTTACAAATGTTGGGAGCAGTAG  100

seq1  -AAGAAAACA-TAAGGTATA-TGATG-TTCTGCGTGA-CTGGCGTA-TAA  135
       ||||||||| || |||||| ||||| |||||||||| |||||||| |||
seq2  AAAGAAAACATTAGGGTATATTGATGTTTCTGCGTGACCTGGCGTATTAA  150

seq1  TAAGCGAT-AAGT--GGTAGTTATT-ATTAGTCT-ATGCTGTAGAGTCCT  180
      |||||||| ||||  | |||||||| |||||||| |||||||||||||||
seq2  TAAGCGATAAAGTTGGTTAGTTATTAATTAGTCTAATGCTGTAGAGTCCT  200

seq1  GA-GATCTAT-AAGGC-GGTATATAAATAATCAGGGGAAATGTATA-TAC  226
      || ||||||| ||||| ||||||||||||||||||||||||||||| |||
seq2  GAGGATCTATAAAGGCGGGTATATAAATAATCAGGGGAAATGTATATTAC  250

seq1  ATTTACAGGAAAAGTACTGCACAACAG-AGATCTAATTTTATCACATCTT  275
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTTACAGGAAAAGTACTGCACAACAGAAGATCTAATTTTATCACATCTT  300

seq1  GCAAACCCTTCTTTAATGTTCCTTTT-AGTCTTTGCTTCCTTTTTAGTT-  323
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  GCAAACCCTTCTTTAATGTTCCTTTTAAGTCTTTGCTTCCTTTTTAGTTC  350

seq1  CTCTGGAGTCAGGGCTT-AAGATACAAG-AATTCCTTCCTCTCTGGGTAG  371
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CTCTGGAGTCAGGGCTTAAAGATACAAGAAATTCCTTCCTCTCTGGGTAG  400

seq1  TCAAAAGTTGCTATGACAACTGACTGGAAATG-AAAGCCCTCTATTTTAT  420
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAAAAGTTGCTATGACAACTGACTGGAAATGAAAAGCCCTCTATTTTAT  450

seq1  TTATCTGAGGATGACGTGCAATAAAGGCAAACACAATTGTAATAAATGTT  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGAGGATGACGTGCAATAAAGGCAAACACAATTGTAATAAATGTT  500

seq1  GCCTTTCACAGAGGATGTGCAGGAGCTAGGCTCCTTCCCATCTTGGTAGT  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCACAGAGGATGTGCAGGAGCTAGGCTCCTTCCCATCTTGGTAGT  550

seq1  ATCCTTGTATTCATACCTATGACCCTATGCTTACATCCAGTTGTGTGTGT  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTATTCATACCTATGACCCTATGCTTACATCCAGTTGTGTGTGT  600

seq1  GTGTGTGTGTGTGTGTGACTGTTTATTTCTGACTAGTCTTGAACTTGGAA  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGACTGTTTATTTCTGACTAGTCTTGAACTTGGAA  650

seq1  CCCTACTGCATCACTTTTTAAAGTGCTGGCATTACAGGTGTGTGCCATCG  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTGCATCACTTTTTAAAGTGCTGGCATTACAGGTGTGTGCCATCG  700

seq1  CACCTGATTTCTTGTATGCTTCTAATAATTGTTGAGGACTCTATGTGGTC  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATTTCTTGTATGCTTCTAATAATTGTTGAGGACTCTATGTGGTC  750

seq1  TGTATCTTAAAGTTTTTATTAGAAACCAAACCTTAGCAATGAAGAGTTAA  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTAAAGTTTTTATTAGAAACCAAACCTTAGCAATGAAGAGTTAA  800

seq1  CACAAACATTAATTCACTTTAAATCACAGTGCTTTTCCTACAGGTGAACT  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATTAATTCACTTTAAATCACAGTGCTTTTCCTACAGGTGAACT  850

seq1  TATAAACACTCTCTACCAGATAAGGCATGAGTGACATTCACCCTTTCTTT  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACACTCTCTACCAGATAAGGCATGAGTGACATTCACCCTTTCTTT  900

seq1  TCAACACTGCTTTCAGCAGCTCAGTGTCTCAAGAATTCATTTGGAAATTA  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTGCTTTCAGCAGCTCAGTGTCTCAAGAATTCATTTGGAAATTA  950

seq1  TCTAGTTATCTAACAAAGACGGAGGTCCCCTTTTTCAGACATAATTCTGA  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTATCTAACAAAGACGGAGGTCCCCTTTTTCAGACATAATTCTGA  1000

seq1  ACGAACCATTTCCCTAAAAGCTGCTTTGATAGCATGTATGTGTTGAGCAG  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACCATTTCCCTAAAAGCTGCTTTGATAGCATGTATGTGTTGAGCAG  1050

seq1  CCAGCCTGAAGAGAATTC  1038
      ||||||||||||||||||
seq2  CCAGCCTGAAGAGAATTC  1068