BAC Information

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BAC

Clone NameB6Ng01-179P14
Chromosome10 (Build37)
Map Location 93,576,177 - 93,679,897
singlet/doubletdoublet
Overlap geneFgd6, Nr2c1, Ndufa12
Upstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt
Downstream geneEG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179P14.bB6Ng01-179P14.g
ACCGA006542GA006543
length916920
definitionB6Ng01-179P14.b B6Ng01-179P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,576,177 - 93,577,075)(93,678,982 - 93,679,897)
sequence
gaattcctgagtactaagggacatagtttgggtggtcccctattttaaca
aacagattccagttaaataaccacatttctactttgcacgggccttccca
tgatgcagctgattttatcatacatactcccagttatggtattaggggat
tctccctaaatgtccacccaaaggacacactttccctagtacatattcac
agaattagtccaggctgaagatggctccgatctgtatgctcagtataact
gggaatgcatttgaatagaaaccgtctacgtttgatggttatgggggcag
agctggttctgctcttccgtgtggagtggactggacgtgtagcggacagc
agactagaagtcctaagttgctagaagcatctttagagaagtgtgtgcat
tttctcctaataccagcacctgggaggtgggagagggaaggtcacgagtt
caaggtcaaccaagtctatggccagccttttgagattgcttttcaaaatc
ttaatttttcatagtgattttcccccaaaagcaatttgaaatatgaaaaa
aaggacagattatcaagacagtgatctgcattagaattaaaacgattaca
ccttttatccaaattctgttaactttcaggagtgagataagatgctgctc
atagcatctactgtgcctggacaatagattttaagactactgtcaggcaa
tagattgccaagacacaccaggcatttataaagccagaaggaaacaatcc
aaaattgtgctcatgccgaaaagtgatagctataatccccagcaactcag
gaagctgaggcaggaagattgaaaagctcaagggccaagcctgtgctccc
atagcaaagacactgtcttttttttaaaatagaaagaagagagaggtggg
aagagagagtagagac
gaattcttatgaaaagatataacattagggaaaaatcaatagttagatgt
actggtgtatcaacagaattggaaaaaaagatcttaaataatgattattt
tcaccctgcccaccccatggggtttaaaaactcaaacatggttttacagg
acagcccactccaagcttgatagcacaggcattactacttctcaaatctc
cagagttacatcctcagtaggttctctgtcagagtttgatgatgtcattc
taaaatcagctggacggccacccaaggcaactatggatgctgagaaaggc
caggaagactgtcattagcagatatcaaatgttaagtcacaaacagaaag
tacagagaccggcaaagaagcacagcagacaggaagactccagccacggc
aggcgcaagtcaaccaaaggaagggctggcttgtcacatcattagggaaa
gcaagagtctcgacatactgcaaagatgaatttgtttaaaaaaggaaatt
aagatagatttcccattacacacttaaaaattcactccagatagagtcaa
agtgcttagaaataccaagagataattaaccttctaaaacaagtatttga
gggatgatacgcatctaaagtgtctcagcaaatatagtttatttaaaata
ctcactggaaccataaggtgtgtaagtcacatggactttgacagaaatac
aaaagcgtcttccaaactgtgtaggccatgtgtgctctacttagtcctct
ttcctgtggaactctgcctcaaggaaagaggacacctgagccaaatgctg
tctatgtacaggatgtttgcttttagttagagcagtgagaaaatggaatg
aacaaagccaagaataaaatggaattcttaatgtttttgcacgatgaagc
cacttagactatactctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93576177_93577075
seq2: B6Ng01-179P14.b_45_960

seq1  GAATTCCTGAGTACTAAGGGACATAGTTTGGGTGGTCCCCTATTTTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTACTAAGGGACATAGTTTGGGTGGTCCCCTATTTTAACA  50

seq1  AACAGATTCCAGTTAAATAACCACATTTCTACTTTGCACGGGCCTTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTCCAGTTAAATAACCACATTTCTACTTTGCACGGGCCTTCCCA  100

seq1  TGATGCAGCTGATTTTATCATACATACTCCCAGTTATGGTATTAGGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGCTGATTTTATCATACATACTCCCAGTTATGGTATTAGGGGAT  150

seq1  TCTCCCTAAATGTCCACCCAAAGGACACACTTTCCCTAGTACATATTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAAATGTCCACCCAAAGGACACACTTTCCCTAGTACATATTCAC  200

seq1  AGAATTAGTCCAGGCTGAAGATGGCTCCGATCTGTATGCTCAGTATAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGTCCAGGCTGAAGATGGCTCCGATCTGTATGCTCAGTATAACT  250

seq1  GGGAATGCATTTGAATAGAAACCGTCTACGTTTGATGGTTATGGGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGCATTTGAATAGAAACCGTCTACGTTTGATGGTTATGGGGGCAG  300

seq1  AGCTGGTTCTGCTCTTCCGTGTGGAGTGGACTGGACGTGTAGCGGACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTCTGCTCTTCCGTGTGGAGTGGACTGGACGTGTAGCGGACAGC  350

seq1  AGACTAGAAGTCCTAAGTTGCTAGAAGCATCTTTAGAGAAGTGTGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGAAGTCCTAAGTTGCTAGAAGCATCTTTAGAGAAGTGTGTGCAT  400

seq1  TTTCTCCTAATACCAGCACCTGGGAGGTGGGAGAGGGAAGGTCACGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTAATACCAGCACCTGGGAGGTGGGAGAGGGAAGGTCACGAGTT  450

seq1  CAAGGTCAACCAAGTCTATGGCCAGCCTTTTGAGATTGCTTTTCAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCAACCAAGTCTATGGCCAGCCTTTTGAGATTGCTTTTCAAAATC  500

seq1  TTAATTTTTCATAGTGATTTTCCCCCAAAAGCAATTTGAAATATGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTCATAGTGATTTTCCCCCAAAAGCAATTTGAAATATGAAAAA  550

seq1  AAGGACAGATTATCAAGACAGTGATCTGCATTAGAATTAAAACGATTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGATTATCAAGACAGTGATCTGCATTAGAATTAAAACGATTACA  600

seq1  CCTTTTATCCAAA-TCTGTTAACTTTCAGGAGTGAGATAAGATGCTGCTC  649
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATCCAAATTCTGTTAACTTTCAGGAGTGAGATAAGATGCTGCTC  650

seq1  ATAGCATCTACTGTGCCTGGACAATAGA-TTTAAGACTACTGTCAGGCAA  698
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAGCATCTACTGTGCCTGGACAATAGATTTTAAGACTACTGTCAGGCAA  700

seq1  TAGATTGCCAAGACACACCAGGCATTTATAAAGCCAGAAGGAAACAATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGCCAAGACACACCAGGCATTTATAAAGCCAGAAGGAAACAATCC  750

seq1  AAAATTGTGCTCATGCCG-AAAGTGATAGCTATAAT-CCCAGC-ACTCAG  795
      |||||||||||||||||| ||||||||||||||||| |||||| ||||||
seq2  AAAATTGTGCTCATGCCGAAAAGTGATAGCTATAATCCCCAGCAACTCAG  800

seq1  GAAGCTGAGGCAGGAAGATTG-AAAGCTC-AGGGCC-AGCCTGTGCT-CC  841
      ||||||||||||||||||||| ||||||| |||||| |||||||||| ||
seq2  GAAGCTGAGGCAGGAAGATTGAAAAGCTCAAGGGCCAAGCCTGTGCTCCC  850

seq1  ATAGC-AAGACACTGTCTTTTT-------TAGAAAGAAAGAGAGAGAGGG  883
      ||||| ||||||||||||||||       ||||||| |||||||||  ||
seq2  ATAGCAAAGACACTGTCTTTTTTTTAAAATAGAAAG-AAGAGAGAGGTGG  899

seq1  GGAGAGAGAG-AGAGAC  899
      | |||||||| ||||||
seq2  GAAGAGAGAGTAGAGAC  916

seq1: chr10_93678982_93679897
seq2: B6Ng01-179P14.g_67_986 (reverse)

seq1  GTGAGAGTTTAGTCT-AGTGGCTTCATCGTGCATAA--CTTAAGAATTCC  47
      |||||||| |||||| ||||||||||||||||| ||   |||||||||||
seq2  GTGAGAGTATAGTCTAAGTGGCTTCATCGTGCAAAAACATTAAGAATTCC  50

seq1  CTTTTATTCTTGGCTTTGTTCATTCCATTTTCTCACTGCTCTAACT-AAA  96
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTTATTCTTGGCTTTGTTCATTCCATTTTCTCACTGCTCTAACTAAAA  100

seq1  GCAAACATCCTGTACATAGACAGCATTTGGCTCAGGTGTCCTCTTTCCTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATCCTGTACATAGACAGCATTTGGCTCAGGTGTCCTCTTTCCTT  150

seq1  GAGGCAGAGTTCCACAGGAAAGAGGACTAAGTAGAGCACACATGGCCTAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGTTCCACAGGAAAGAGGACTAAGTAGAGCACACATGGCCTAC  200

seq1  ACAGTTTGGAAGACGCTTTTGTATTTCTGTCAAAGTCCATGTGACTTACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGGAAGACGCTTTTGTATTTCTGTCAAAGTCCATGTGACTTACA  250

seq1  CACCTTATGGTTCCAGTGAGTATTTTAAATAAACTATATTTGCTGAGACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTATGGTTCCAGTGAGTATTTTAAATAAACTATATTTGCTGAGACA  300

seq1  CTTTAGATGCGTATCATCCCTCAAATACTTGTTTTAGAAGGTTAATTATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGATGCGTATCATCCCTCAAATACTTGTTTTAGAAGGTTAATTATC  350

seq1  TCTTGGTATTTCTAAGCACTTTGACTCTATCTGGAGTGAATTTTTAAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTATTTCTAAGCACTTTGACTCTATCTGGAGTGAATTTTTAAGTG  400

seq1  TGTAATGGGAAATCTATCTTAATTTCCTTTTTTAAACAAATTCATCTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGGAAATCTATCTTAATTTCCTTTTTTAAACAAATTCATCTTTG  450

seq1  CAGTATGTCGAGACTCTTGCTTTCCCTAATGATGTGACAAGCCAGCCCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTCGAGACTCTTGCTTTCCCTAATGATGTGACAAGCCAGCCCTT  500

seq1  CCTTTGGTTGACTTGCGCCTGCCGTGGCTGGAGTCTTCCTGTCTGCTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTTGACTTGCGCCTGCCGTGGCTGGAGTCTTCCTGTCTGCTGTG  550

seq1  CTTCTTTGCCGGTCTCTGTACTTTCTGTTTGTGACTTAACATTTGATATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGCCGGTCTCTGTACTTTCTGTTTGTGACTTAACATTTGATATC  600

seq1  TGCTAATGACAGTCTTCCTGGCCTTTCTCAGCATCCATAGTTGCCTTGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGACAGTCTTCCTGGCCTTTCTCAGCATCCATAGTTGCCTTGGG  650

seq1  TGGCCGTCCAGCTGATTTTAGAATGACATCATCAAACTCTGACAGAGAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGTCCAGCTGATTTTAGAATGACATCATCAAACTCTGACAGAGAAC  700

seq1  CTACTGAGGATGTAACTCTGGAGATTTGAGAAGTAGTAATGCCTGTGCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAGGATGTAACTCTGGAGATTTGAGAAGTAGTAATGCCTGTGCTA  750

seq1  TCAAGCTTGGAGTGGGCTGTCCTGTAAAACCATGTTTGAGTTTTTAAACC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTGGAGTGGGCTGTCCTGTAAAACCATGTTTGAGTTTTTAAACC  800

seq1  CCATGGGGTGGGCAGGGTGAAAATAATCATTATTTAAGATCTTTTTTTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGGTGGGCAGGGTGAAAATAATCATTATTTAAGATCTTTTTTTCC  850

seq1  AATTCTGTTGATACACCAGTACATCTAACTATTGATTTTTCCCTAATGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTGATACACCAGTACATCTAACTATTGATTTTTCCCTAATGTT  900

seq1  ATATCTTTTCATAAGAATTC  916
      ||||||||||||||||||||
seq2  ATATCTTTTCATAAGAATTC  920