BAC Information

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BAC

Clone NameB6Ng01-180M23
Chromosome10 (Build37)
Map Location 64,717,908 - 64,840,766
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna3
Downstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180M23.bB6Ng01-180M23.g
ACCGA007144GA007145
length1,168584
definitionB6Ng01-180M23.b B6Ng01-180M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,839,605 - 64,840,766)(64,717,908 - 64,718,491)
sequence
gaattctgtcactgggggttggctttaagatttcagatactcaaaccagg
cccagtgtagcactctctctttttgctccctaccaacccagatatagcag
gctcagctacctctacagcagcatgtatgccaccatgcttcctgccatga
tgacaatggactaaacctctgagatgtagaccagcccccaattaaacgtt
ttcaattataagagttgctgtggtcaagctgggcacttgcctttaatccc
agcacttgggaggcagaggaaagcagatttctgatttcaaggccagcctg
gtctacagagtgagttccaggacaatcagggctacacagaaaaacgctgt
ctcaaaaaaacccaaaaaacaaacaaacaaacaaacaaacaaacaaataa
aaagagttgatatgatcattgtgtcttttcacagcaattgaaaccctaac
taggaaaactggtgaactctggaatgtgtttgtaagtgtacatcatctca
gctactcccccactgaatataataagtttagacttagtgcattttaagtt
tacaaagaacaaactccaaggcttaccaccgaaactcacttttatgatct
aaccatccaggaaatcacatacattcacattttcttcatgggtgctcact
tagaccatgactgtctcccttcaaactcctaaaagtttagacctattttg
taacagaaaatagttaagtttgatatggtcataatatgctccaaggaagt
atataattaaaatccacatacatctcccttggtgagtgcaatggcagtgc
aactcttcatgaattttataatagtaataatgtccattggaaaaaaatct
ggaagtgttccacattataaccagatacacatgaacttgggaaatacata
tggagatggtatggttccagtatgttatattaaaacaatgctatagatcc
aaccctcttcaggtattgggctcctagaaaatgagaatatatctgtgtgg
taaagagttgaaacttggaaaaacttcttcagtagcaccacataccctat
cttatagctatctactaatcttcttcttcctctaaacataatgtgcctaa
acagtactacctgggaaattcttttctagggtagcaaattcaatagaatt
attaatctacggatatac

gaattccatggtcagagccctttctggaggccaactctcctcagtgatcc
taagattctgtgtgtgctagggtgcctgtggcatggagaggcctctgggg
accatggtaccttcctcagagttagtgcccaacatgacactgggctggca
ctgatctgaacaaaccagtacagaggtttttatactttccgaattttata
accaataccaccatccatttcagaactcacaatgaagcccacaaccaccc
atataacacatagtttcaagctcttgataaccatatactgttatactact
atttatttgagtttcttctgttacatatctcctacctgagattatccatc
tctacccaggtagtatttaccatcttgactatgaaagcagtatttccaag
aggatcagctgaaaaataagagtttttcttactctttgcagaaataaaag
atatatggatataattgtctatatttgagttggtctgtatttttctcttc
tctttaataatttgctgcatgcggctaaatatcttttcacaataacatca
caggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64839605_64840766
seq2: B6Ng01-180M23.b_50_1217 (reverse)

seq1  GTATATCCCTAGAATAAATAAATCTATTG-ATTTGCTA-CCTAGAAAAAG  48
      |||||||| ||| || ||||| ||||||| |||||||| ||||| |||||
seq2  GTATATCCGTAG-ATTAATAATTCTATTGAATTTGCTACCCTAG-AAAAG  48

seq1  AATT--CCAGGTAGTACTGTT--AGCACATTAATGTTTAGAGG-AGA--G  91
      ||||  |||||||||||||||   ||||||| ||||||||||| |||   
seq2  AATTTCCCAGGTAGTACTGTTTAGGCACATT-ATGTTTAGAGGAAGAAGA  97

seq1  AGATTAGTAGATAGCTATAAGATAGGGTATGTGGTGCTAACTGAAG-AGT  140
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  AGATTAGTAGATAGCTATAAGATAGGGTATGTGGTGCT-ACTGAAGAAGT  146

seq1  TTTTCCAAGTTTTCAACTCTTTACCACACAGATATATTCTCATTTTCTAG  190
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAG-TTTCAACTCTTTACCACACAGATATATTCTCATTTTCTAG  195

seq1  GAGCCCAATACCTGAAGAGGGTTGGATCTATAGCATTGTTTTAATATAAC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAATACCTGAAGAGGGTTGGATCTATAGCATTGTTTTAATATAAC  245

seq1  ATACTGGAACCATACCATCTCCATATGTA-TTCCCAAGTTCATGTGTATC  289
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATACTGGAACCATACCATCTCCATATGTATTTCCCAAGTTCATGTGTATC  295

seq1  TGGTTATAATGTGGAACACTTCCAGATTTTTTTCCAATGGACATTATTAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATAATGTGGAACACTTCCAGATTTTTTTCCAATGGACATTATTAC  345

seq1  TATTATAAAATTCATGAAGAGTTGCACTGCCATTGCACTCACCAAGGGAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAAATTCATGAAGAGTTGCACTGCCATTGCACTCACCAAGGGAG  395

seq1  ATGTATGTGGATTTTAATTATATACTTCCTTGGAGCATATTATGACCATA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGGATTTTAATTATATACTTCCTTGGAGCATATTATGACCATA  445

seq1  TCAAACTTAACTATTTTCTGTTACAAAATAGGTCTAAACTTTTAGGAGTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTAACTATTTTCTGTTACAAAATAGGTCTAAACTTTTAGGAGTT  495

seq1  TGAAGGGAGACAGTCATGGTCTAAGTGAGCACCCATGAAGAAAATGTGAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAGACAGTCATGGTCTAAGTGAGCACCCATGAAGAAAATGTGAA  545

seq1  TGTATGTGATTTCCTGGATGGTTAGATCATAAAAGTGAGTTTCGGTGGTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGATTTCCTGGATGGTTAGATCATAAAAGTGAGTTTCGGTGGTA  595

seq1  AGCCTTGGAGTTTGTTCTTTGTAAACTTAAAATGCACTAAGTCTAAACTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGAGTTTGTTCTTTGTAAACTTAAAATGCACTAAGTCTAAACTT  645

seq1  ATTATATTCAGTGGGGGAGTAGCTGAGATGATGTACACTTACAAACACAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTCAGTGGGGGAGTAGCTGAGATGATGTACACTTACAAACACAT  695

seq1  TCCAGAGTTCACCAGTTTTCCTAGTTAGGGTTTCAATTGCTGTGAAAAGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTTCACCAGTTTTCCTAGTTAGGGTTTCAATTGCTGTGAAAAGA  745

seq1  CACAATGATCATATCAACTCTTTTTATTTGTTTGTTTGTTTGTTTGTTTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGATCATATCAACTCTTTTTATTTGTTTGTTTGTTTGTTTGTTTG  795

seq1  TTTGTTTTTTGGGTTTTTTTGAGACAGCGTTTTTCTGTGTAGCCCTGATT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTGGGTTTTTTTGAGACAGCGTTTTTCTGTGTAGCCCTGATT  845

seq1  GTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAAATCAGAAATCTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAAATCAGAAATCTG  895

seq1  CTTTCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCAAGTGCCCAGCTTGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCAAGTGCCCAGCTTGA  945

seq1  CCACAGCAACTCTTATAATTGAAAACGTTTAATTGGGGGCTGGTCTACAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAACTCTTATAATTGAAAACGTTTAATTGGGGGCTGGTCTACAT  995

seq1  CTCAGAGGTTTAGTCCATTGTCATCATGGCAGGAAGCATGGTGGCATACA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTTTAGTCCATTGTCATCATGGCAGGAAGCATGGTGGCATACA  1045

seq1  TGCTGCTGTAGAGGTAGCTGAGCCTGCTATATCTGGGTTGGTAGGGAGCA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTAGAGGTAGCTGAGCCTGCTATATCTGGGTTGGTAGGGAGCA  1095

seq1  AAAAGAGAGAGTGCTACACTGGGCCTGGTTTGAGTATCTGAAATCTTAAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGAGTGCTACACTGGGCCTGGTTTGAGTATCTGAAATCTTAAA  1145

seq1  GCCAACCCCCAGTGACAGAATTC  1162
      |||||||||||||||||||||||
seq2  GCCAACCCCCAGTGACAGAATTC  1168


seq1: chr10_64717908_64718491
seq2: B6Ng01-180M23.g_63_646

seq1  GAATTCCATGGTCAGAGCCCTTTCTGGAGGCCAACTCTCCTCAGTGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTCAGAGCCCTTTCTGGAGGCCAACTCTCCTCAGTGATCC  50

seq1  TAAGATTCTGTGTGTGCTAGGGTGCCTGTGGCATGGAGAGGCCTCTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCTGTGTGTGCTAGGGTGCCTGTGGCATGGAGAGGCCTCTGGGG  100

seq1  ACCATGGTACCTTCCTCAGAGTTAGTGCCCAACATGACACTGGGCTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTACCTTCCTCAGAGTTAGTGCCCAACATGACACTGGGCTGGCA  150

seq1  CTGATCTGAACAAACCAGTACAGAGGTTTTTATACTTTCCGAATTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGAACAAACCAGTACAGAGGTTTTTATACTTTCCGAATTTTATA  200

seq1  ACCAATACCACCATCCATTTCAGAACTCACAATGAAGCCCACAACCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACCACCATCCATTTCAGAACTCACAATGAAGCCCACAACCACCC  250

seq1  ATATAACACATAGTTTCAAGCTCTTGATAACCATATACTGTTATACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACACATAGTTTCAAGCTCTTGATAACCATATACTGTTATACTACT  300

seq1  ATTTATTTGAGTTTCTTCTGTTACATATCTCCTACCTGAGATTATCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGAGTTTCTTCTGTTACATATCTCCTACCTGAGATTATCCATC  350

seq1  TCTACCCAGGTAGTATTTACCATCTTGACTATGAAAGCAGTATTTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCAGGTAGTATTTACCATCTTGACTATGAAAGCAGTATTTCCAAG  400

seq1  AGGATCAGCTGAAAAATAAGAGTTTTTCTTACTCTTTGCAGAAATAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGCTGAAAAATAAGAGTTTTTCTTACTCTTTGCAGAAATAAAAG  450

seq1  ATATATGGATATAATTGTCTATATTTGAGTTGGTCTGTATTTTTCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGATATAATTGTCTATATTTGAGTTGGTCTGTATTTTTCTCTTC  500

seq1  TCTTTAATAATTTGCTGCATGCGGCTAAATATCTTTTCACAATAACATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATAATTTGCTGCATGCGGCTAAATATCTTTTCACAATAACATCA  550

seq1  CAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  584
      ||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  584


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