BAC Information

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BAC

Clone NameB6Ng01-182I22
Chromosome10 (Build37)
Map Location 57,371,380 - 57,520,897
singlet/doubletdoublet
Overlap geneLOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
Upstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619
Downstream geneEG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182I22.bB6Ng01-182I22.g
ACCGA008414GA008415
length1,121970
definitionB6Ng01-182I22.b B6Ng01-182I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,371,380 - 57,372,516)(57,519,924 - 57,520,897)
sequence
gaattccaatactgtggcatatgactgaggaatacagtggtcttgctcct
atgcattaggactcaaagacaactgctgtaggggtatgtcacctttgcag
gcacagggttgagagaggctgccactcacacagaggatccacttgaaatg
gaaatttgaaaatgtgaaaagaaacatgtgtttttattttaagctcttca
tacacagtttgacagaaaacccaaggaaggttgctcaactatcagaagat
aattggtatacatagtacattcatatttcttaatatatatgtatgcattg
tatgtatgtgcatgtatatataaagacaggcagctgtttgcttaagaaat
ctgtcctcctaatcttagagaaacagaaaaattatgagattattttatca
ttttaagtgacatggttttgctcaagaaagctcttgtttatttcaatgaa
gaacaaagaaccagagacatttatctttataatttttcttgctgtttgtt
tccttcaggggtcatgatatactggaaaccacacaagattagtctgtgga
ggcagaaaccataaagcccctgaaaccaggttcggagaggaacgataaag
gtaggtaaagttttggtcccgttgatccttggactgatgctatcactgac
tatatctttattactctaaagccagggaacagcaaaggatggctagggag
agactggcctcagtttagaaagttactcaatactgtcctgtcaaccattt
ctagtgatgaatagcaaacactacacacatttccatctgatgtaacctcg
ggactgggggaagtagagaaagaccatcttttgatatttctattcttctt
agctgtctctctttaaatttctctcagtgaaagccaactgggtcattaaa
atcttttaaaattctagtctttaatgctggatacaaattcattacattaa
ttatactctcactggaaatattttctgagagccacagtagaaatgcctgt
aatgatgttttgttctgagacagcaggtctgctatatagctgagctgctc
atgacatgtatccaagtcttggctcagcctgccaacatttagactgcatg
actattttccaataagtctct
gaattcttaataaaatcaaaggctgacaaaataagttgatatggagagtc
acacaggacatctccgaaaggcccagggttggaggcatttgcgcctttag
atgaagcacacaccttggtacggtcatctgtaatgtggtaagtagggtct
agatgtaagtcagtcacgtgccaaaactgccctgttggttagaaaagaaa
tactaataagtttgtgtttagagtaagaccaagtaacctgtctcctggca
caatttcaatgttccttacaccacgagtttaagcacagctctctcctttg
agatgaagtaacttcaaatagcagaagagcatacaacttaaatgtgtgaa
aacaacaagcccagagttgatgtgactactccaccaagactatagtaaag
actaggctacacagcgaggggtttggggccacctgtctgagaggcaaatg
aggtccttccatattgtgtctcaatagcatgtcttcttgcaaaatttgag
attttgcaaattatttgcttttctcttgtagaaaaacaatgacttagaaa
tattatctactttgctaagactgaatcaggaaatgtttatttcagttaat
ttgtatatgctttcactcagtattaaaagaaaaaaaagcataaatccttt
attccctgtgacagacatagtatctctgagatattcctaaaagctaatta
atcagcgctacgaccaacatacacgagtactcattgttaatattgtggga
agcagttcttcaaagagagccttcctattgatctcaggaaaagccaaatt
tatttgtcagcaattctacttgcaaatcatattaagaaatattactgcat
tgaaggaattattagaacaattttatcttcacaatgagttagtgttttat
gatagctgtggtaattaagaaattttttatttagtgtatttatatatatc
catatatatttatatattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_57371380_57372516
seq2: B6Ng01-182I22.b_42_1162

seq1  GAATTCCAATACTGTGGCATATGACTGAGGAATACAGTGGTCTTGCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATACTGTGGCATATGACTGAGGAATACAGTGGTCTTGCTCCT  50

seq1  ATGCATTAGGACTCAAAGACAACTGCTGTAGGGGTATGTCACCTTTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTAGGACTCAAAGACAACTGCTGTAGGGGTATGTCACCTTTGCAG  100

seq1  GCACAGGGTTGAGAGAGGCTGCCACTCACACAGAGGATCCACTTGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGTTGAGAGAGGCTGCCACTCACACAGAGGATCCACTTGAAATG  150

seq1  GAAATTTGAAAATGTGAAAAGAAACATGTGTTTTTATTTTAAGCTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGAAAATGTGAAAAGAAACATGTGTTTTTATTTTAAGCTCTTCA  200

seq1  TACACAGTTTGACAGAAAACCCAAGGAAGGTTGCTCAACTATCAGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTTTGACAGAAAACCCAAGGAAGGTTGCTCAACTATCAGAAGAT  250

seq1  AATTGGTATACATAGTACATTCATATTTCTTAATATATATGTATGCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTATACATAGTACATTCATATTTCTTAATATATATGTATGCATTG  300

seq1  TATGTATGTGCATGTATATATAAAGACAGGCAGCTGTTTGCTTAAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTGCATGTATATATAAAGACAGGCAGCTGTTTGCTTAAGAAAT  350

seq1  CTGTCCTCCTAATCTTAGAGAAACAGAAAAATTATGAGATTATTTTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCCTAATCTTAGAGAAACAGAAAAATTATGAGATTATTTTATCA  400

seq1  TTTTAAGTGACATGGTTTTGCTCAAGAAAGCTCTTGTTTATTTCAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGACATGGTTTTGCTCAAGAAAGCTCTTGTTTATTTCAATGAA  450

seq1  GAACAAAGAACCAGAGACATTTATCTTTATAATTTTTCTTGCTGTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGAACCAGAGACATTTATCTTTATAATTTTTCTTGCTGTTTGTT  500

seq1  TCCTTCAGGGGTCATGATATACTGGAAACCACACAAGATTAGTCTGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGGGGTCATGATATACTGGAAACCACACAAGATTAGTCTGTGGA  550

seq1  GGCAGAAACCATAAAGCCCCTGAAACCAGGTTCGGAGAGGAACGATAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAACCATAAAGCCCCTGAAACCAGGTTCGGAGAGGAACGATAAAG  600

seq1  GTAGGTAAAGTTTTGGTCCCGTTGATCCTTGGACTGATGCTATCACTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAAAGTTTTGGTCCCGTTGATCCTTGGACTGATGCTATCACTGAC  650

seq1  TATATCTTTATTACTCTAAAGCCAGGGAACAGCAAAGGATGGCTAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTATTACTCTAAAGCCAGGGAACAGCAAAGGATGGCTAGGGAG  700

seq1  AGACTGGCCTCAGTTTAGAAAGTTACTCAATACTGTCCTGTCAACCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCCTCAGTTTAGAAAGTTACTCAATACTGTCCTGTCAACCATTT  750

seq1  CTAGTGATGAATAGCAAACACTACACACATTTCCATCTGATGTAACCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGATGAATAGCAAACACTACACACATTTCCATCTGATGTAACCTCG  800

seq1  GGACTGGGGGAAGTAGAGAAAGACCATCTTTTGATATTTCTATTCTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGGGAAGTAGAGAAAGACCATCTTTTGATATTTCTATTCTTCTT  850

seq1  AGCTGTCTCTCTTTAAATTTCTCTCAGTGAAAGCCAACT-GGTCATTAAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCTGTCTCTCTTTAAATTTCTCTCAGTGAAAGCCAACTGGGTCATTAAA  900

seq1  ATCTTTTAAAATTCTAGTCTTTAATGCTGGATACAAATTCATTACATTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAAAATTCTAGTCTTTAATGCTGGATACAAATTCATTACATTAA  950

seq1  TTATTACTCTCACTGGAAATATTTTTCTGAGAGGCCACAGTAAGAAATGC  999
      ||| ||||||||||||||||| |||||||||| |||||||| ||||||||
seq2  TTA-TACTCTCACTGGAAATA-TTTTCTGAGA-GCCACAGT-AGAAATGC  996

seq1  CTGTAAATGATGTTTTGTTTCCTTGAGACAGGCAGGGTCTTGCTATATAG  1049
      |||| ||||||||||||||    ||||||| ||| |||| ||||||||||
seq2  CTGT-AATGATGTTTTGTT---CTGAGACA-GCA-GGTC-TGCTATATAG  1039

seq1  CCTGAGCTGCTCATGAACATGTATCCCAGGCCTTGGGCTCAGCCTTGCAA  1099
       |||||||||||||| |||||||||| || |  | ||||||||| ||| |
seq2  -CTGAGCTGCTCATG-ACATGTATCCAAGTC--TTGGCTCAGCC-TGCCA  1084

seq1  ACATTAGGACTGCATGACTATTTTCAAATAAATTCTCT  1137
      |||||  |||||||||||||||||| ||| || |||||
seq2  ACATTTAGACTGCATGACTATTTTCCAAT-AAGTCTCT  1121

seq1: chr10_57519924_57520897
seq2: B6Ng01-182I22.g_62_1031 (reverse)

seq1  TGAATATATAAAATAATATATGAATATATATAAATACACTTAAATAAAAA  50
      ||||||||||||   ||||||| |||||||||||||||| ||||||||||
seq2  TGAATATATAAA--TATATATGGATATATATAAATACAC-TAAATAAAAA  47

seq1  ATTTCTTAA-TACCACAGCTATCATAAAACACTAACTCATTGTGAAAGAT  99
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  ATTTCTTAATTACCACAGCTATCATAAAACACTAACTCATTGTG-AAGAT  96

seq1  AAAATTTGTTCTAATAATTCCTTCAATGCAGTAATATTTCTTAATATGAT  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAA-TTGTTCTAATAATTCCTTCAATGCAGTAATATTTCTTAATATGAT  145

seq1  TTGCAAGTAGAATTGCTGACAAATAAATTTGGCTTTTCCTGAGATCAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTAGAATTGCTGACAAATAAATTTGGCTTTTCCTGAGATCAATA  195

seq1  GGAAGGCTCTCTTTGAAGAACTGCTTCCCACAATATTAACAATGAGTACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTCTCTTTGAAGAACTGCTTCCCACAATATTAACAATGAGTACT  245

seq1  CGTGTATGTTGGTCGTAGCGCTGATTAATTAGCTTTTAGGAATATCTCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATGTTGGTCGTAGCGCTGATTAATTAGCTTTTAGGAATATCTCAG  295

seq1  AGATACTATGTCTGTCACAGGGAATAAAGGATTTATGCTTTTTTTTCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTATGTCTGTCACAGGGAATAAAGGATTTATGCTTTTTTTTCTTT  345

seq1  TAATACTGAGTGAAAGCATATACAAATTAACTGAAATAAACATTTCCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGAGTGAAAGCATATACAAATTAACTGAAATAAACATTTCCTGA  395

seq1  TTCAGTCTTAGCAAAGTAGATAATATTTCTAAGTCATTGTTTTTCTACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTTAGCAAAGTAGATAATATTTCTAAGTCATTGTTTTTCTACAA  445

seq1  GAGAAAAGCAAATAATTTGCAAAATCTCAAATTTTGCAAGAAGACATGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGCAAATAATTTGCAAAATCTCAAATTTTGCAAGAAGACATGCT  495

seq1  ATTGAGACACAATATGGAAGGACCTCATTTGCCTCTCAGACAGGTGGCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACACAATATGGAAGGACCTCATTTGCCTCTCAGACAGGTGGCCC  545

seq1  CAAACCCCTCGCTGTGTAGCCTAGTCTTTACTATAGTCTTGGTGGAGTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCTCGCTGTGTAGCCTAGTCTTTACTATAGTCTTGGTGGAGTAG  595

seq1  TCACATCAACTCTGGGCTTGTTGTTTTCACACATTTAAGTTGTATGCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCAACTCTGGGCTTGTTGTTTTCACACATTTAAGTTGTATGCTCT  645

seq1  TCTGCTATTTGAAGTTACTTCATCTCAAAGGAGAGAGCTGTGCTTAAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATTTGAAGTTACTTCATCTCAAAGGAGAGAGCTGTGCTTAAACT  695

seq1  CGTGGTGTAAGGAACATTGAAATTGTGCCAGGAGACAGGTTACTTGGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGTAAGGAACATTGAAATTGTGCCAGGAGACAGGTTACTTGGTCT  745

seq1  TACTCTAAACACAAACTTATTAGTATTTCTTTTCTAACCAACAGGGCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAAACACAAACTTATTAGTATTTCTTTTCTAACCAACAGGGCAGT  795

seq1  TTTGGCACGTGACTGACTTACATCTAGACCCTACTTACCACATTACAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCACGTGACTGACTTACATCTAGACCCTACTTACCACATTACAGAT  845

seq1  GACCGTACCAAGGTGTGTGCTTCATCTAAAGGCGCAAATGCCTCCAACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTACCAAGGTGTGTGCTTCATCTAAAGGCGCAAATGCCTCCAACCC  895

seq1  TGGGCCTTTCGGAGATGTCCTGTGTGACTCTCCATATCAACTTATTTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTTCGGAGATGTCCTGTGTGACTCTCCATATCAACTTATTTTGT  945

seq1  CAGCCTTTGATTTTATTAAGAATTC  974
      |||||||||||||||||||||||||
seq2  CAGCCTTTGATTTTATTAAGAATTC  970