BAC Information

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BAC

Clone NameB6Ng01-182K01
Chromosome10 (Build37)
Map Location 12,171,966 - 12,310,533
singlet/doubletdoublet
Overlap geneUtrn
Upstream geneEpm2a, EG666732, LOC100039343
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182K01.bB6Ng01-182K01.g
ACCGA008467GA008468
length1,1431,095
definitionB6Ng01-182K01.b B6Ng01-182K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,309,394 - 12,310,533)(12,171,966 - 12,173,051)
sequence
gaattcttaagaacccccaaattccaaaagcacaaattagaacactttgt
ttcttcttatcaaaggtctcacctggggtagtataagtaacagagccact
tgtccagcttttgtttcctcatatccacttattagggtaccagataatgt
aacagaaaagttgagatgcataataaaaattgaaggattatgaaatgtca
ttacaagtcagccactattggtagtttctgaaagatggtttttagtcatc
caaaaattcttctgttgaaggcatattgagaaactaccagatatttggct
cctgaggagtcagtaaacatatgcattttataagcatgtacatttgtcac
tagtgcagcttcttagaaacgacttcctgtattgctttgccatgatgagt
gttaccaataattatggatgcagtttttagatgtatggatgtgcccttgt
agttctgagcctttgtaagcatgttttcatcaatctctatagaatgtttt
cccaggagtcttgtactccttattcttcttttggaagcccttgctgactg
cttctctttctctgtgctcttatggtacccattgctgccctgacagttca
tcctgatcaatttctgaatgcctagctcaaacccattgccctgtgattca
tgcttgcctgggtcacttactttctgccctttctttttctgaacatgtaa
gccattgttattttcattccttcctcatgctgggataatacctgcccagc
ttttatgtggctttggggatccaaattcaggtcatctcctttgtgcggta
agtactttatctcctgagccacctcctcaacctctcaactgtatcttaaa
cagccattcacatctctcttctctgatgatcgctcaaaaccatgtccttg
taactggaccaaagtaatagtccccaaagttctctttgcttctgcttgtg
attgctctcctgcatcagtcttctcaggcaccagaggtcttagagaggca
tgcactgggtcctccttagtgcactatcttagttggatcacaccggaagc
ctcacaatcatacttaaccctattgcctttgttccactatgtgtaaattc
tgggtgatcagtccctgtctggttgatgtgtttttgttgctgc
gaattcactgtccatttcctaagaaactctttcgctcccccaacacctgt
gcttcaagtaaatctacattaaaatattttcttaaagaactataactctg
tcacataaaacttttttaaaaaattagctgaacacaggcatcatttttaa
gttcaaagccttctgatggttctgtaatatccaagatccctactctgggt
agagtaaaattatagttagttgatcagagtcactcagaggaccattactt
gaagtagagttaacagtcattgctcagataaacgaatgggccatatgaag
tagagaaactcaggtagtcattgctggacatcagtgattactgcctacaa
agtaactgaattttccttagcttaattaatttgttatttgttttttatta
gatattttctttatatacatttcaaatttcaaatgcttagcttaattcat
ttatcccaatagaaagtgagaccgaagggaacccatctgacccagagggg
tgattgatgtttcattggtattgaggggaagtaagttttgcaggattttt
tttatccattaaaaacaaaacaatggcatatttcgaggtattgtttttct
agtagaaaaaaaaattctatgtagcatttctatgtgttcacatctggcag
tcagaaatgggattgtgccaacatttaactcccagaaatgaatcacaaca
ttttgcacactgggtgggtcctaacaaagagtcactgcctcctcattcta
gaataacagcatcctctctatatgttctgagcttaactgtgttcctctcg
atttgcacactgaaagtcctaactctttgtatcttaggatactgctttca
tgccaacagcatctttcaagagtcagtttaccatgaagatggaaagggga
gacctttaatccaaaatgcctggtgcacttgtaggaaaaaagagcaagta
gaaagaatttatggctcttttatggaaagaagagagaaactgaagaagcc
aaggtagaccgtcttggagaaaccacccagcattcagccccaccatcatc
gtgaggctcggtcttcaagcctttacaagatggtgaggaaatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12309394_12310533
seq2: B6Ng01-182K01.b_42_1184 (reverse)

seq1  GCAGCAACAAAAACACATCAA-CAGACAGAAACTTGATCACCCAGAA-TT  48
      ||||||||||||||||||||| |||||||  || ||||||||||||| ||
seq2  GCAGCAACAAAAACACATCAACCAGACAGGGAC-TGATCACCCAGAATTT  49

seq1  ACACATAGTGG-ACAAAGGCAATAGGGTATAGTATGATTGTGAGGCTTTC  97
      ||||||||||| ||||||||||||||||  |||||||||||||||||| |
seq2  ACACATAGTGGAACAAAGGCAATAGGGTTAAGTATGATTGTGAGGCTTCC  99

seq1  GGTGTGATTCAACT-AGATAGTGCACTAA-GAGGACCCAGTGCATGCTTC  145
      |||||||| ||||| |||||||||||||| ||||||||||||||||| ||
seq2  GGTGTGATCCAACTAAGATAGTGCACTAAGGAGGACCCAGTGCATGCCTC  149

seq1  TCTAAGACCTCTGGTGCCCTGAGAAGACTGATGCAGGAGAGCAATCACAA  195
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTAAGACCTCTGGTG-CCTGAGAAGACTGATGCAGGAGAGCAATCACAA  198

seq1  GCAGAAGCAAAGAGAACTTTGGGGACTATTACTTTGGTCCAGTTACAAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCAAAGAGAACTTTGGGGACTATTACTTTGGTCCAGTTACAAGG  248

seq1  ACATGGTTTTGAGCGATCATCAGAGAAGAGAGATGTGAATGGCTGTTTAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTTTGAGCGATCATCAGAGAAGAGAGATGTGAATGGCTGTTTAA  298

seq1  GATACAGTTGAGAGGTTGAGGAGGTGGCTCAGGAGATAAAGTACTTACCG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTTGAGAGGTTGAGGAGGTGGCTCAGGAGATAAAGTACTTACCG  348

seq1  CACAAAGGAGATGACCTGAATTTGGATCCCCAAAGCCACATAAAAGCTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGAGATGACCTGAATTTGGATCCCCAAAGCCACATAAAAGCTGG  398

seq1  GCAGGTATTATCCCAGCATGAGGAAGGAATGAAAATAACAATGGCTTACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATTATCCCAGCATGAGGAAGGAATGAAAATAACAATGGCTTACA  448

seq1  TGTTCAGAAAAAGAAAGGGCAGAAAGTAAGTGACCCAGGCAAGCATGAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAAAAAGAAAGGGCAGAAAGTAAGTGACCCAGGCAAGCATGAAT  498

seq1  CACAGGGCAATGGGTTTGAGCTAGGCATTCAGAAATTGATCAGGATGAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCAATGGGTTTGAGCTAGGCATTCAGAAATTGATCAGGATGAAC  548

seq1  TGTCAGGGCAGCAATGGGTACCATAAGAGCACAGAGAAAGAGAAGCAGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGCAGCAATGGGTACCATAAGAGCACAGAGAAAGAGAAGCAGTC  598

seq1  AGCAAGGGCTTCCAAAAGAAGAATAAGGAGTACAAGACTCCTGGGAAAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGCTTCCAAAAGAAGAATAAGGAGTACAAGACTCCTGGGAAAAC  648

seq1  ATTCTATAGAGATTGATGAAAACATGCTTACAAAGGCTCAGAACTACAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAGAGATTGATGAAAACATGCTTACAAAGGCTCAGAACTACAAG  698

seq1  GGCACATCCATACATCTAAAAACTGCATCCATAATTATTGGTAACACTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATCCATACATCTAAAAACTGCATCCATAATTATTGGTAACACTCA  748

seq1  TCATGGCAAAGCAATACAGGAAGTCGTTTCTAAGAAGCTGCACTAGTGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAAAGCAATACAGGAAGTCGTTTCTAAGAAGCTGCACTAGTGAC  798

seq1  AAATGTACATGCTTATAAAATGCATATGTTTACTGACTCCTCAGGAGCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACATGCTTATAAAATGCATATGTTTACTGACTCCTCAGGAGCCA  848

seq1  AATATCTGGTAGTTTCTCAATATGCCTTCAACAGAAGAATTTTTGGATGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGGTAGTTTCTCAATATGCCTTCAACAGAAGAATTTTTGGATGA  898

seq1  CTAAAAACCATCTTTCAGAAACTACCAATAGTGGCTGACTTGTAATGACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACCATCTTTCAGAAACTACCAATAGTGGCTGACTTGTAATGACA  948

seq1  TTTCATAATCCTTCAATTTTTATTATGCATCTCAACTTTTCTGTTACATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAATCCTTCAATTTTTATTATGCATCTCAACTTTTCTGTTACATT  998

seq1  ATCTGGTACCCTAATAAGTGGATATGAGGAAACAAAAGCTGGACAAGTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTACCCTAATAAGTGGATATGAGGAAACAAAAGCTGGACAAGTGG  1048

seq1  CTCTGTTACTTATACTACCCCAGGTGAGACCTTTGATAAGAAGAAACAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTACTTATACTACCCCAGGTGAGACCTTTGATAAGAAGAAACAAA  1098

seq1  GTGTTCTAATTTGTGCTTTTGGAATTTGGGGGTTCTTAAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAATTTGTGCTTTTGGAATTTGGGGGTTCTTAAGAATTC  1143

seq1: chr10_12171966_12173051
seq2: B6Ng01-182K01.g_66_1160

seq1  GAATTCACTGTCCATTTCCTAAGAAACTCTTTCGCTCCCCCAACACCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCCATTTCCTAAGAAACTCTTTCGCTCCCCCAACACCTGT  50

seq1  GCTTCAAGTAAATCTACATTAAAATATTTTCTTAAAGAACTATAACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAGTAAATCTACATTAAAATATTTTCTTAAAGAACTATAACTCTG  100

seq1  TCACATAAAACTTTTTTAAAAAATTAGCTGAACACAGGCATCATTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAAACTTTTTTAAAAAATTAGCTGAACACAGGCATCATTTTTAA  150

seq1  GTTCAAAGCCTTCTGATGGTTCTGTAATATCCAAGATCCCTACTCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGCCTTCTGATGGTTCTGTAATATCCAAGATCCCTACTCTGGGT  200

seq1  AGAGTAAAATTATAGTTAGTTGATCAGAGTCACTCAGAGGACCATTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAATTATAGTTAGTTGATCAGAGTCACTCAGAGGACCATTACTT  250

seq1  GAAGTAGAGTTAACAGTCATTGCTCAGATAAACGAATGGGCCATATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAGTTAACAGTCATTGCTCAGATAAACGAATGGGCCATATGAAG  300

seq1  TAGAGAAACTCAGGTAGTCATTGCTGGACATCAGTGATTACTGCCTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAACTCAGGTAGTCATTGCTGGACATCAGTGATTACTGCCTACAA  350

seq1  AGTAACTGAATTTTCCTTAGCTTAATTAATTTGTTATTTGTTTTTTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGAATTTTCCTTAGCTTAATTAATTTGTTATTTGTTTTTTATTA  400

seq1  GATATTTTCTTTATATACATTTCAAATTTCAAATGCTTAGCTTAATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCTTTATATACATTTCAAATTTCAAATGCTTAGCTTAATTCAT  450

seq1  TTATCCCAATAGAAAGTGAGACCGAAGGGAACCCATCTGACCCAGAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCAATAGAAAGTGAGACCGAAGGGAACCCATCTGACCCAGAGGGG  500

seq1  TGATTGATGTTTCATTGGTATTGAGGGGAAGTAAGTTTTGCAGGATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATGTTTCATTGGTATTGAGGGGAAGTAAGTTTTGCAGGATTTTT  550

seq1  TTTATCCATTAAAAACAAAACAATGGCATATTTCGAGGTATTGTTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCATTAAAAACAAAACAATGGCATATTTCGAGGTATTGTTTTTCT  600

seq1  AGTAGAAAAAAAAATTCTATGTAGCATTTCTATGTGTTCACATCTGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAAAAAAATTCTATGTAGCATTTCTATGTGTTCACATCTGGCAG  650

seq1  TCAGAAATGGGATTGTGCCAACATTTAACTCCCAGAAATGAATCACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGGGATTGTGCCAACATTTAACTCCCAGAAATGAATCACAACA  700

seq1  TTTTGCACACTGGGTGGGTCCTAACAAAGAGTCACTGCCTCCTCATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCACACTGGGTGGGTCCTAACAAAGAGTCACTGCCTCCTCATTCTA  750

seq1  GAATAACAGCATCCTCTCTATATGTTCTGAGCTTAACTGTGTTCCTCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACAGCATCCTCTCTATATGTTCTGAGCTTAACTGTGTTCCTCTCG  800

seq1  ATTTGCACACTG-AAGTCCTAACTCTTTGTATCTTAGGATACTGCTTTTC  849
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  ATTTGCACACTGAAAGTCCTAACTCTTTGTATCTTAGGATACTGC-TTTC  849

seq1  ATGCCAACAGCATCTTTCAAGAGTCAG-TTAACATGAAGATGG-AAGGGG  897
      ||||||||||||||||||||||||||| ||| ||||||||||| ||||||
seq2  ATGCCAACAGCATCTTTCAAGAGTCAGTTTACCATGAAGATGGAAAGGGG  899

seq1  AGACC-TTAATCCAGAATGCCTGGTGCACTTGTAGGAAAAAAGAGCAAGT  946
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  AGACCTTTAATCCAAAATGCCTGGTGCACTTGTAGGAAAAAAGAGCAAGT  949

seq1  AGAAAGAATTTATGGCTC-TTTATGGAAAGAAGAGAGAAACTGAAG-AGC  994
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  AGAAAGAATTTATGGCTCTTTTATGGAAAGAAGAGAGAAACTGAAGAAGC  999

seq1  CAAGG-AGA-CGTTCTGGAGAAAACAACACAGCAGTCAGCCCCACCATCA  1042
      ||||| ||| |||  ||||| |||| || ||||| |||||||||||||||
seq2  CAAGGTAGACCGTCTTGGAG-AAACCACCCAGCATTCAGCCCCACCATCA  1048

seq1  CCGTGA-GCTCAGTCTTCAGGCCTTTAC-AGAT-GTGAGGAAATGAT  1086
       ||||| |||| ||||||| |||||||| |||| |||||||||||||
seq2  TCGTGAGGCTCGGTCTTCAAGCCTTTACAAGATGGTGAGGAAATGAT  1095