BAC Information

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BAC

Clone NameB6Ng01-183C21
Chromosome10 (Build37)
Map Location 56,251,019 - 56,406,019
singlet/doubletdoublet
Overlap geneLOC100042622
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347
Downstream geneLOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183C21.bB6Ng01-183C21.g
ACCGA008876GA008877
length1,0541,195
definitionB6Ng01-183C21.b B6Ng01-183C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,251,019 - 56,252,056)(56,404,838 - 56,406,019)
sequence
gaattcacaactctgcttcaaccagtgccccatttcccattttttttttg
tgtgtgtatttaatatgtgtgcccgaaatataaagatactttaaaaataa
ccattatcacaccgaggaaattggaattagttcaagtggaaatatttaaa
gtgtgtgcactttagctatttcatctggcatggcagaaccgtgcccagag
aaaaacacgaagctgaaataagccagccctcctgtgcttttccaggagct
cagctcagctccgtggagaaacaaaccaggactcgccagtaaaactgtcc
ttccctgtttggtcctttatggggttccaggtatatgaatgcagagtgtg
gaagagtttgtgtacaactcactttcttgggaccagtatattaggcactc
atttcttccgggaggttaatggggaaaccttctgagaggcaaaactgaag
agattgtggtaattgatagagaaagaagctcttgtcagcaaatcctaata
cagagttactattgtttttctcccatccatccagtcatccatttatttat
ttatttatttatttatttatttatttatttactttacatcccaatatcag
ttgccctcctcccaaccccccctcacacagctcctccccctccctctccc
attctcctctgagaagggaaaggcccccactggatttcaccctatcctgg
tagatcaagtcattgcaggactacatgcaatctctcactaaagccagaca
aggtgacccagttaggggaatgggatccgtaggctgataataaatttagg
gatagtccctgttccagttgttgggggaaccacatgaaaaccaagttgca
catctattgcatgtgtgcttggggcctaggtctaacctatgctcactttt
tggttggtagttcagtctctaggaacccacaagggtgtaggttagttgac
tctgttagtctttctatgtccttgtccctcggtcttttcccccattcttt
tgttagacttccccaagatccctctatgttgggctatgggttcctctccc
atct

gaattcaagttagcggacaaaaggggaaggaagaaagacataaagtgaga
aggtcaattggatttatactggaaaggttattcatcgaaggggaaagagc
ccggctggagaaacaatgactcacagtgtctatgatgtggacaggaaact
ggtaaggaaataaatcacagttcttcaatgagaatgctcttacatcagta
tgaactgttctctacttaagttccacatttcccatgccaaatacctgcat
aactgcaaatttggggatgggggttttagttgactgattgagataatgtt
atgtagcccaggctagtctcaaacttgatagagggttgaggctgaccttg
aactcttgaccccgagtctctgcttcctacatgatggtattacaggcgtg
agctaccacacccagcttgacacttcttatattgtgattaaagccatttt
tgaaagtgaggggggaaaatgattaatggttcagtagtaaaagtcaacct
agtgcggaacttgtcttccaaagcgaattccgtggcctgcccttccccag
ctttgctgagctgtactgctgatcttctcttaggcctttgcttaacacgg
tgatgtccaaccatctaatttatgtgcacgtgctttaaacagttttcctt
ctgtaaattagtgtttgatgaatcagttggtcaagtattaaagcctgttt
tcccttgaatttgttaaatataatgtagaatacttttactatgtaatccc
ctgtttggctatctagatcatttatgtgaaataagatacgtgctaatttt
attataaaactgttttgcgctgggcgtggtggtgcacgcctttaatccca
gcacgcgggaggcagaagcaggcagatttctgagttcaaggcctagccct
ggtctacagagtgagctccaaggacagcccagggctacacagagaaactc
ctgtccttgaaaaaccatttaaaaaactaaaaaacaaaccctgtttgcaa
tgaaaagttgggctgaaggggtaagagtacctggttgccttttgaaaagg
tctgggaatgagatcctacacctacatggcaccctcacagccactttaaa
tggattaaaattcaattcgaaaggaattcaatggccctttcgactctgtg
gcactagtcaacacatatacactatatatgctggacacaaaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56251019_56252056
seq2: B6Ng01-183C21.b_42_1078

seq1  GAATTCACAACTCTGCTTCAACCAGTGCCCCATTTCCCATTTTTTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTCTGCTTCAACCAGTGCCCCATTTCCCATTTTTTTTTTG  50

seq1  TGTGTGTATTTAATATGTGTGCCCGAAATATAAAGATACTTTAAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATTTAATATGTGTGCCCGAAATATAAAGATACTTTAAAAATAA  100

seq1  CCATTATCACACCGAGGAAATTGGAATTAGTTCAAGTGGAAATATTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCACACCGAGGAAATTGGAATTAGTTCAAGTGGAAATATTTAAA  150

seq1  GTGTGTGCACTTTAGCTATTTCATCTGGCATGGCAGAACCGTGCCCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCACTTTAGCTATTTCATCTGGCATGGCAGAACCGTGCCCAGAG  200

seq1  AAAAACACGAAGCTGAAATAAGCCAGCCCTCCTGTGCTTTTCCAGGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACGAAGCTGAAATAAGCCAGCCCTCCTGTGCTTTTCCAGGAGCT  250

seq1  CAGCTCAGCTCCGTGGAGAAACAAACCAGGACTCGCCAGTAAAACTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCTCCGTGGAGAAACAAACCAGGACTCGCCAGTAAAACTGTCC  300

seq1  TTCCCTGTTTGGTCCTTTATGGGGTTCCAGGTATATGAATGCAGAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTTTGGTCCTTTATGGGGTTCCAGGTATATGAATGCAGAGTGTG  350

seq1  GAAGAGTTTGTGTACAACTCACTTTCTTGGGACCAGTATATTAGGCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTTGTGTACAACTCACTTTCTTGGGACCAGTATATTAGGCACTC  400

seq1  ATTTCTTCCGGGAGGTTAATGGGGAAACCTTCTGAGAGGCAAAACTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCGGGAGGTTAATGGGGAAACCTTCTGAGAGGCAAAACTGAAG  450

seq1  AGATTGTGGTAATTGATAGAGAAAGAAGCTCTTGTCAGCAAATCCTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTGGTAATTGATAGAGAAAGAAGCTCTTGTCAGCAAATCCTAATA  500

seq1  CAGAGTTACTATTGTTTTTCTCCCATCCATCCAGTCATCCATTTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTACTATTGTTTTTCTCCCATCCATCCAGTCATCCATTTATTTAT  550

seq1  TTATTTATTTATTTATTTATTTATTTATTTACTTTACATCCCAATATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTATTTACTTTACATCCCAATATCAG  600

seq1  TTGCCCTCCTCCCAACCCCCCCTCACACAGCTCCTCCCCCTCCCTCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCCTCCCAACCCCCCCTCACACAGCTCCTCCCCCTCCCTCTCCC  650

seq1  ATTCTCCTCTGAGAAGGGAAAGGCCCCCACTGGATTTCACCCTATCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTCTGAGAAGGGAAAGGCCCCCACTGGATTTCACCCTATCCTGG  700

seq1  TAGATCAAGTCATTGCAGGACTACATGCAATCTCTCACTAAAGCCAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAAGTCATTGCAGGACTACATGCAATCTCTCACTAAAGCCAGACA  750

seq1  AGGTGACCCAGTTAGGGGAATGGGATCCGTAGGCTGATAATAAATTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACCCAGTTAGGGGAATGGGATCCGTAGGCTGATAATAAATTTAGG  800

seq1  GATAGTCCCTGTTCCAGTTGTTGGGGGAACCACATGAAAACCAAGTTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCCCTGTTCCAGTTGTTGGGGGAACCACATGAAAACCAAGTTGCA  850

seq1  CATCTATTGCATGTGTGCTTGGGGCCTAGGTCTAACCTATGCTCACTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTGCATGTGTGCTTGGGGCCTAGGTCTAACCTATGCTCACTTTT  900

seq1  TGGTTGGTAGTTCAGTCTCTAGGAACCCACAAGGGTGTAGGTTAGTTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTAGTTCAGTCTCTAGGAACCCACAAGGGTGTAGGTTAGTTGAC  950

seq1  TCTGTTAGTCTTTCTATGTCCTTGTCCCTCGGTCTTTTCCCCCAATTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTGTTAGTCTTTCTATGTCCTTGTCCCTCGGTCTTTTCCCCC-ATTCTT  999

seq1  TTGTAAGAC-TCCCCAAGATCCCTCTAATGTTTGGCTAT  1038
      |||| |||| |||||||||||||||| ||||| ||||||
seq2  TTGTTAGACTTCCCCAAGATCCCTCT-ATGTTGGGCTAT  1037


seq1: chr10_56404838_56406019
seq2: B6Ng01-183C21.g_65_1259 (reverse)

seq1  GTGTTT--TGTCCA-CATATA---TGTATATGTG-TGCCTAGTGCCATCA  43
      ||||||  |||||| ||||||   |||||||||| || ||||||||| ||
seq2  GTGTTTTGTGTCCAGCATATATAGTGTATATGTGTTGACTAGTGCCA-CA  49

seq1  GAGGTCAGAAGAGGGCATTGAA-TCCTCTGGAATTTGAATTTTAATTCAA  92
      || ||| |||  || ||||||| |||| | ||| ||||||||||| || |
seq2  GA-GTC-GAAAGGGCCATTGAATTCCTTTCGAA-TTGAATTTTAA-TCCA  95

seq1  TTTAAAGATGGCTGTGA-GGTGCCATGTAGGTGTAGGGACTCAATTCCCA  141
      ||||||| ||||||||| |||||||||||||||||||  ||| |||||||
seq2  TTTAAAG-TGGCTGTGAGGGTGCCATGTAGGTGTAGGATCTC-ATTCCCA  143

seq1  GGCCTTTCCAAAA-GCAA-CAAGTACTCTTAACCCCTCAG-CCAACTTTT  188
      | ||||| ||||| |||| || ||||||||| ||| |||| |||||||||
seq2  GACCTTTTCAAAAGGCAACCAGGTACTCTTACCCCTTCAGCCCAACTTTT  193

seq1  CA-TGCAAACAGGTTTTGTTTTTTGTTTTTTTTAATGGTTTTTCAA-GAC  236
      || |||||||||| ||||||||||  |||||| ||||||||||||| |||
seq2  CATTGCAAACAGGGTTTGTTTTTTAGTTTTTTAAATGGTTTTTCAAGGAC  243

seq1  AGG-GTTTCTCTGTGTAGCCCT-GGCTGTCC-TGGAGCTCACTCTGTAGA  283
      ||| |||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AGGAGTTTCTCTGTGTAGCCCTGGGCTGTCCTTGGAGCTCACTCTGTAGA  293

seq1  CCA-GGCT-GGCCTTGAACTCAGAAATCTGCCTGCTTCTGCCTCCCGCGT  331
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTAGGCCTTGAACTCAGAAATCTGCCTGCTTCTGCCTCCCGCGT  343

seq1  GCTGGGATTAAAGGCGTGCACCACCACGCCCAGCGC-AAACAGTTTTATA  380
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTGGGATTAAAGGCGTGCACCACCACGCCCAGCGCAAAACAGTTTTATA  393

seq1  ATAAAATTAGCACGTATCTTATTTCACATAAATGATCTAGATAGCCAAAC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAGCACGTATCTTATTTCACATAAATGATCTAGATAGCCAAAC  443

seq1  AGGGGATTACATAGTAAAAGTATTCTACATTATATTTAACAAATTCAAGG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTACATAGTAAAAGTATTCTACATTATATTTAACAAATTCAAGG  493

seq1  GAAAACAGGCTTTAATACTTGACCAACTGATTCATCAAACACTAATTTAC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGCTTTAATACTTGACCAACTGATTCATCAAACACTAATTTAC  543

seq1  AGAAGGAAAACTGTTTAAAGCACGTGCACATAAATTAGATGGTTGGACAT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAACTGTTTAAAGCACGTGCACATAAATTAGATGGTTGGACAT  593

seq1  CACCGTGTTAAGCAAAGGCCTAAGAGAAGATCAGCAGTACAGCTCAGCAA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGTTAAGCAAAGGCCTAAGAGAAGATCAGCAGTACAGCTCAGCAA  643

seq1  AGCTGGGGAAGGGCAGGCCACGGAATTCGCTTTGGAAGACAAGTTCCGCA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGAAGGGCAGGCCACGGAATTCGCTTTGGAAGACAAGTTCCGCA  693

seq1  CTAGGTTGACTTTTACTACTGAACCATTAATCATTTTCCCCCCTCACTTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGACTTTTACTACTGAACCATTAATCATTTTCCCCCCTCACTTT  743

seq1  CAAAAATGGCTTTAATCACAATATAAGAAGTGTCAAGCTGGGTGTGGTAG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGGCTTTAATCACAATATAAGAAGTGTCAAGCTGGGTGTGGTAG  793

seq1  CTCACGCCTGTAATACCATCATGTAGGAAGCAGAGACTCGGGGTCAAGAG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCCTGTAATACCATCATGTAGGAAGCAGAGACTCGGGGTCAAGAG  843

seq1  TTCAAGGTCAGCCTCAACCCTCTATCAAGTTTGAGACTAGCCTGGGCTAC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTCAGCCTCAACCCTCTATCAAGTTTGAGACTAGCCTGGGCTAC  893

seq1  ATAACATTATCTCAATCAGTCAACTAAAACCCCCATCCCCAAATTTGCAG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTATCTCAATCAGTCAACTAAAACCCCCATCCCCAAATTTGCAG  943

seq1  TTATGCAGGTATTTGGCATGGGAAATGTGGAACTTAAGTAGAGAACAGTT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGGTATTTGGCATGGGAAATGTGGAACTTAAGTAGAGAACAGTT  993

seq1  CATACTGATGTAAGAGCATTCTCATTGAAGAACTGTGATTTATTTCCTTA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGATGTAAGAGCATTCTCATTGAAGAACTGTGATTTATTTCCTTA  1043

seq1  CCAGTTTCCTGTCCACATCATAGACACTGTGAGTCATTGTTTCTCCAGCC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCCTGTCCACATCATAGACACTGTGAGTCATTGTTTCTCCAGCC  1093

seq1  GGGCTCTTTCCCCTTCGATGAATAACCTTTCCAGTATAAATCCAATTGAC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTTTCCCCTTCGATGAATAACCTTTCCAGTATAAATCCAATTGAC  1143

seq1  CTTCTCACTTTATGTCTTTCTTCCTTCCCCTTTTGTCCGCTAACTTGAAT  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACTTTATGTCTTTCTTCCTTCCCCTTTTGTCCGCTAACTTGAAT  1193

seq1  TC  1182
      ||
seq2  TC  1195


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