BAC Information

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BAC

Clone NameB6Ng01-183M16
Chromosome10 (Build37)
Map Location 18,587,977 - 18,737,216
singlet/doubletdoublet
Overlap geneTnfaip3
Upstream geneHeca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp
Downstream geneTpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183M16.bB6Ng01-183M16.g
ACCGA009329GA009330
length1,1271,170
definitionB6Ng01-183M16.b B6Ng01-183M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,587,977 - 18,588,617)(18,736,063 - 18,737,216)
sequence
gaattctttagggccctctgattctcaagatgatgataaataactttggc
ttcaacttgaagtcgccagctgattctgcccctcagcagaatcagtctat
tcgtcatgtgttgacacttgacacttgacccttgctctgtcctggtagga
aaatctgttgtctagtagagagcgtcttcctttatgatctcagctctgtc
ttctcgagaatctactggagcttctacatcgcactttcatgttatggaga
cacttctgtccttaagcctcaggaaccagactgtggacatttatagtctc
ctattctcttccagccctctgaaatcttgaatggaaagcaggtggggcat
tgctttaggttagctttacgtcaagggaaatgtcctggctggtttcatct
tgtatccatcaaaactttcttttaaactagtaatatagtcattttatttt
attttattttattttattttattttattaaaaatcatttttcctctgttc
actagcttagcacttttggtttcttttaagaactttcctttgcattcatg
acttggctacccatctgacaaaagagcttgaagcctatgatggcttttga
cacgccttcactgctatacttagacatttgtggctttcaatttaaagtga
aaggcataggacttgtccttccacctgaacacttccttgccactgtaggt
tagcatttactgacctttaatattgatgtattttagcaagtaagaaatcc
caagaaaagaagtgaaacagatgactaatggaccagttagaatatatgcc
acacacacacacacacacacacacacacacacacacacacacatatatat
atataagtgctacatgggtatgttagtgccccagtgatgtagtaacagca
aagatttgatcacagataaacccaccagatatgatgaaataggaattatc
aaactatgacagagtgacacaataggtcattgggtattatatgtcatatt
tatatatttttcttgaaaatggaagcacttgcatagaggtcagacattta
acccttttgatcaaacggttgtaagccaaacgatgggaattgtaacagtc
actggtgcctagcttacagcttgggtc
gaattcccagctcagcaaacctagaagccaaacaggagccagaatgggca
catggaagctgctgggttcgttgaggaactgtctgagatgacagagagcc
tggttctgttgtggtctgaagattaatattctcttcgtggtgtgtgcttt
gctatcctgcatcttttatcacctctgtgtgcctgggaggtttcctgagg
gtagagcctgcatctattgtggctagttgctgtgtttgtcaaaggaattc
ctaggccctctcctgtgagctttggagcaagactgtgtagactgtgtaga
ctgtgggcatgcacttaagctttctaaacttcacataaaaccttatgtga
gcctgtaataaatatgtcaggaatttaaattgctacactgcttaagtgtc
cgaagctgaaaacatctgtaaagaagaagacaaatactggcaggttttaa
atagaaacggagtagggaaggacctgtgtggggagtggggctggggtaat
ggccattagacctgtcctggggtagtggccagtactcttgcttcaagcct
ctcattacaaatagaaaatgctgtcctctagcccagtcactactggggaa
agaagcacatgtctctagttcaaacgggcaatatacagtctggcaacttg
gcaaacacacttgaagtcccagtggcactgagtatttctatctggtttgc
gctattttctaggaatcctgccaggggaccctagagatacacactcacac
acacacacacacacacacacacacacacacacacacacacagagtaaatt
aatcacactaaacactatttaaaataacatcaggtcactccgcagacctc
ccgtggtccctcaaacagatcccggctcctttccgggaagagcctcacac
cctgcaccctagccccagcacaaccaccccagagagcttctgcttcagcc
cctttgatgtatcaatgtggcctgaccttgaggtcttatcttctaggact
gccctgggagtttctttgtcacagagttcattgtcacctttctcagagtt
gccccttcctggccaggtgaatgaaggccactcagctttcttaagtgtgt
agctctctgccagaaaagaattccccaactcaccaacttcacctcataac
gcaactcaactttctccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18587977_18588617
seq2: B6Ng01-183M16.b_532_1172

seq1  TTTTTCCTCTGTTCACTAGCTTAGCACTTTTGGTTTCTTTTAAGAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTGTTCACTAGCTTAGCACTTTTGGTTTCTTTTAAGAACTTT  50

seq1  CCTTTGCATTCATGACTTGGCTACCCATCTGACAAAAGAGCTTGAAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCATTCATGACTTGGCTACCCATCTGACAAAAGAGCTTGAAGCCT  100

seq1  ATGATGGCTTTTGACACGCCTTCACTGCTATACTTAGACATTTGTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCTTTTGACACGCCTTCACTGCTATACTTAGACATTTGTGGCTT  150

seq1  TCAATTTAAAGTGAAAGGCATAGGACTTGTCCTTCCACCTGAACACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTAAAGTGAAAGGCATAGGACTTGTCCTTCCACCTGAACACTTCC  200

seq1  TTGCCACTGTAGGTTAGCATTTACTGACCTTTAATATTGATGTATTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACTGTAGGTTAGCATTTACTGACCTTTAATATTGATGTATTTTAG  250

seq1  CAAGTAAGAAATCCCAAGAAAAGAAGTGAAACAGATGACTAATGGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAGAAATCCCAAGAAAAGAAGTGAAACAGATGACTAATGGACCAG  300

seq1  TTAGAATATATGCCACACACACACACACACACACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATATATGCCACACACACACACACACACACACACACACACACACAC  350

seq1  ACACACATATATATATATAAGTGCTACATGGGTATGTTAGTGCCCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATATATATATATAAGTGCTACATGGGTATGTTAGTGCCCCAGTG  400

seq1  ATGTAGTAACAGCAAAGATTTGATCACAGATAAACCCACCAGATATGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTAACAGCAAAGATTTGATCACAGATAAACCCACCAGATATGATG  450

seq1  AAATAGGAATTATCAAACTATGACAGAGTGACACAATAGGTCATT-GGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAATAGGAATTATCAAACTATGACAGAGTGACACAATAGGTCATTGGGTA  500

seq1  TTATATGTCATATTTATATATTTTTCTTGAAAATGGAAGCACTTTGCATA  549
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATATGTCATATTTATATATTTTTCTTGAAAATGGAAGCAC-TTGCATA  549

seq1  GAGGTCAGACAATTTAACCCTTTTGATCAAACGGGTTTGTAAGCC-AACG  598
      |||||||||| |||||||||||||||||||||||  ||||||||| ||||
seq2  GAGGTCAGAC-ATTTAACCCTTTTGATCAAACGG--TTGTAAGCCAAACG  596

seq1  AT-GGAATTGTAACAGTCACT-GTGCCTAGCTTACAAGCTGGGTC  641
      || |||||||||||||||||| ||||||||||||||   ||||||
seq2  ATGGGAATTGTAACAGTCACTGGTGCCTAGCTTACAGCTTGGGTC  641

seq1: chr10_18736063_18737216
seq2: B6Ng01-183M16.g_64_1233 (reverse)

seq1  TCTGGAGAAAGTGGAG-TGTGTATGGGGGTGAGGTGGGGTGGGGTGGGGA  49
      |||||||||||| ||| || ||   | ||||| ||  |||| | ||||||
seq2  TCTGGAGAAAGTTGAGTTGCGTTATGAGGTGAAGT-TGGTGAGTTGGGGA  49

seq1  --TACTCTCTG---CAGAGCTACACACT--AGAAA-CTGAGGTGGCTTCA  91
        |  | ||||    |||||||||||||  ||||| |||||  | |||||
seq2  ATTCTTTTCTGGCAGAGAGCTACACACTTAAGAAAGCTGAGTGGCCTTCA  99

seq1  TTCA-CTGGCCAGGAA-GGGCCACTCTGAG-AAGGTGACATTGAAACTCT  138
      |||| ||||||||||| |||| |||||||| ||||||||| || ||||||
seq2  TTCACCTGGCCAGGAAGGGGCAACTCTGAGAAAGGTGACAATG-AACTCT  148

seq1  GTGACAAAGAAACCTCCA-GGCAGT-CTAG-AGATAAGACCTCAAGGGTC  185
      |||||||||||||  ||| |||||| |||| |||||||||||||| ||||
seq2  GTGACAAAGAAACTCCCAGGGCAGTCCTAGAAGATAAGACCTCAA-GGTC  197

seq1  A-GCCACATTTGATACATC-AAGGGGCTG-AGCAG-AGCTCTCT-GGGTG  230
      | |||||| |||||||||| ||||||||| ||||| |||||||| |||||
seq2  AGGCCACA-TTGATACATCAAAGGGGCTGAAGCAGAAGCTCTCTGGGGTG  246

seq1  GTTGTGCTGGGGCTAGGGTGCAGGGTGTGAGGCTCTTCCCGGAAAGGAGC  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTGGGGCTAGGGTGCAGGGTGTGAGGCTCTTCCCGGAAAGGAGC  296

seq1  CGGGATCTGTTTGAGGGACCACGGGAGGTCTGCGGAGTGACCTGATGTTA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATCTGTTTGAGGGACCACGGGAGGTCTGCGGAGTGACCTGATGTTA  346

seq1  TTTTAAATAGTGTTTAGTGTGATTAATTTACTCTGTGTGTGTGTGTGTGT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAGTGTTTAGTGTGATTAATTTACTCTGTGTGTGTGTGTGTGT  396

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTATCTCTAGGGTCCC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTATCTCTAGGGTCCC  446

seq1  CTGGCAGGATTCCTAGAAAATAGCGCAAACCAGATAGAAATACTCAGTGC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGATTCCTAGAAAATAGCGCAAACCAGATAGAAATACTCAGTGC  496

seq1  CACTGGGACTTCAAGTGTGTTTGCCAAGTTGCCAGACTGTATATTGCCCG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGACTTCAAGTGTGTTTGCCAAGTTGCCAGACTGTATATTGCCCG  546

seq1  TTTGAACTAGAGACATGTGCTTCTTTCCCCAGTAGTGACTGGGCTAGAGG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTAGAGACATGTGCTTCTTTCCCCAGTAGTGACTGGGCTAGAGG  596

seq1  ACAGCATTTTCTATTTGTAATGAGAGGCTTGAAGCAAGAGTACTGGCCAC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTTTCTATTTGTAATGAGAGGCTTGAAGCAAGAGTACTGGCCAC  646

seq1  TACCCCAGGACAGGTCTAATGGCCATTACCCCAGCCCCACTCCCCACACA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGGACAGGTCTAATGGCCATTACCCCAGCCCCACTCCCCACACA  696

seq1  GGTCCTTCCCTACTCCGTTTCTATTTAAAACCTGCCAGTATTTGTCTTCT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCCCTACTCCGTTTCTATTTAAAACCTGCCAGTATTTGTCTTCT  746

seq1  TCTTTACAGATGTTTTCAGCTTCGGACACTTAAGCAGTGTAGCAATTTAA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAGATGTTTTCAGCTTCGGACACTTAAGCAGTGTAGCAATTTAA  796

seq1  ATTCCTGACATATTTATTACAGGCTCACATAAGGTTTTATGTGAAGTTTA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGACATATTTATTACAGGCTCACATAAGGTTTTATGTGAAGTTTA  846

seq1  GAAAGCTTAAGTGCATGCCCACAGTCTACACAGTCTACACAGTCTTGCTC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTAAGTGCATGCCCACAGTCTACACAGTCTACACAGTCTTGCTC  896

seq1  CAAAGCTCACAGGAGAGGGCCTAGGAATTCCTTTGACAAACACAGCAACT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCACAGGAGAGGGCCTAGGAATTCCTTTGACAAACACAGCAACT  946

seq1  AGCCACAATAGATGCAGGCTCTACCCTCAGGAAACCTCCCAGGCACACAG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAATAGATGCAGGCTCTACCCTCAGGAAACCTCCCAGGCACACAG  996

seq1  AGGTGATAAAAGATGCAGGATAGCAAAGCACACACCACGAAGAGAATATT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATAAAAGATGCAGGATAGCAAAGCACACACCACGAAGAGAATATT  1046

seq1  AATCTTCAGACCACAACAGAACCAGGCTCTCTGTCATCTCAGACAGTTCC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAGACCACAACAGAACCAGGCTCTCTGTCATCTCAGACAGTTCC  1096

seq1  TCAACGAACCCAGCAGCTTCCATGTGCCCATTCTGGCTCCTGTTTGGCTT  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGAACCCAGCAGCTTCCATGTGCCCATTCTGGCTCCTGTTTGGCTT  1146

seq1  CTAGGTTTGCTGAGCTGGGAATTC  1154
      ||||||||||||||||||||||||
seq2  CTAGGTTTGCTGAGCTGGGAATTC  1170