BAC Information

Click to search

BAC

Clone NameB6Ng01-184J07
Chromosome10 (Build37)
Map Location 22,893,162 - 22,894,336
singlet/doubletsinglet
Overlap geneEya4
Upstream geneRaet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184J07.bB6Ng01-184J07.g
ACCGA009919GA009920
length1,1531,157
definitionB6Ng01-184J07.b B6Ng01-184J07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatactgaatggctgagaagcgcccaaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaataaaaacaaccctgaga
tgccacctcataccagccagaatggctaagataaaaaaactcaggtgaca
gcagatgctggtgaggatgtggagaaagaagaacactcctccattgctgg
tgggatttgcaagcttgtacaaccactctggaaatcagtctggcagttcc
tcagaaaattggacatagttttctggaagatccagcaatacctctcctgg
gcatatacccagaagatgttccaactggtaagaaggacacatgttcccct
atggtcatagcagccttatttgtaatagccagaaactggagataatccta
atttccctcaacagaggaatggatacagaaaatatggtacatttacacaa
tggagtactactcagctattaaaaacaatgaatttatgagattcttagac
aaatggatggatctggaggatatcatcttgagtgaggtaacccagtcaca
aaagaacacacgtgatatgtactcactgataagtggatattagcccagaa
gctcagaatccttcttagaagggggaacaaaatacccatggaaggagtta
cagagacaaagtttggagcagagactgaaggaatgaccatccagagactg
ccccacttggggatctatcccataaataaccaccaaacccagacactatg
gcagatgtcaacaagagcctgctgaaaggagcctgatatagctgtcttct
gagggcctctgccagtgcctgggaaatacagaagtggatgcttacaacta
tccattggatggagtacaaggtccccagtgaaggaactaagagaaagtac
ccaaggagctgaagaggtttgaagccccacagaaggaacatcaatatgaa
ctaaccagtaccccctgagcttcttggaactaaatcaccaatcaacaaaa
cacatagtgcacttgttagctctagctatatatgtagcatagatggccta
gtctgtcatcaatcggaggagagaccctaggtctgtgagttctatgcccc
tgtataggagaattccagactgggaatgggaagagtggggtggggcttgg
caa
gaattcattgacattgtttaatgacttttcatcctttggataccaccaac
gtctctagtgattgtttggaattaaaaactatttgtattgattgtagatt
tttctatttcttctctctaatgtttcattctactggtgtctactaatttt
tctgtttctagtttttcagatgaaaatgtacatcatagattttcaggccc
ctttccctgttgctcactaaccaccaccatatatactatataccaagctc
tgactcgatgtattgtcactagtattttgctctataggccatttttcatt
tatttttgaatttttctttgacttacattagaagattaaatagaagtata
acatttcattagcaaaaattggggttttatatatcatattatcattttat
ttttgaatgacttcattatggttggatatcatattctataagatttacat
ttaacatcttattagtatttatcttgtaggccagtatagttcttttggca
atgttccatgtctaattaaaaatagcttatttctatagttattattaggt
cctataaatcattggtgatgataatgcgttaagttttttttttaatttta
ttttggagtctttcaaaagaatgacttttggccgggcagtgatggcacac
gcctttaatcccagcacttgggaggcagaggaaggcggatttctgagttc
gaggccagcctggtctacagagtgagttccaggacagccagggctataca
gagaaatcctgtctcaaaaaacaacaagaacaacaacaaaaagaatgact
tttgtgaaataatgttctaaggttccaatcagtccacagagttagttgcc
tctttcttccttttattttgtcagaaaaagtcaatcctttcaggatctca
ggtttattagatacatcaactccttcctattctcagaagcaaacctgtca
agtcttcctctttttggatagaaagcattgttttctgttaagaagacttg
caagtctgctgtcagtctgaggtgtttgaagccacttggatcacttgagt
gtgttacttctggctacgggtactcctcactggcgacgaagctgccgagt
cacgaattaacattctcccgatctctgtttgctgctagatgattatttca
tgtcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_22893162_22894336
seq2: B6Ng01-184J07.g_68_1224 (reverse)

seq1  GCTGCCATGAAATAAATCATTCCTGACAGCAACACAGGGGAACGGGAGAA  50
      |||| |||||||| ||||||  ||  |||||| ||| | || ||||||||
seq2  GCTGACATGAAAT-AATCAT--CTAGCAGCAA-ACA-GAGATCGGGAGAA  45

seq1  TGTTTAATTCCCGTGACTCGGCAGCTCCCGTCGCCAGTGAGGAAGTAACC  100
      || ||||||  |||||||||||||||  |||||||||||||| ||| |||
seq2  TG-TTAATT--CGTGACTCGGCAGCT-TCGTCGCCAGTGAGG-AGT-ACC  89

seq1  CGTAGCCAGAAGTAAACACAACTCAAGTTGATCCAAGTGGCTTCAAAACA  150
      ||||||||||||| ||||| ||||||| |||||||||||||||| |||||
seq2  CGTAGCCAGAAGT-AACAC-ACTCAAG-TGATCCAAGTGGCTTC-AAACA  135

seq1  ACCCTCAGACTGACAGCCAGACTTGCAAGTCTTC-TAACAGAAAACAATG  199
        |||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  --CCTCAGACTGACAG-CAGACTTGCAAGTCTTCTTAACAGAAAACAATG  182

seq1  CTTTCTATCCAAAAAGAGG-AGACTTTGACAGGTTTGCTTCTGAGAATAG  248
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  CTTTCTATCCAAAAAGAGGAAGAC-TTGACAGGTTTGCTTCTGAGAATAG  231

seq1  GAAGGAGTTGATGTATCTAATAAACCTGAGATCCTGAAAGGATTGACTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTGATGTATCTAATAAACCTGAGATCCTGAAAGGATTGACTTT  281

seq1  TTCTGACAAAATTAAAGGAAGAAAGAGGCAACTAACTCTGTGGACCTGAT  348
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  TTCTGACAAAATAAAAGGAAGAAAGAGGCAACTAACTCTGTGGA-CTGAT  330

seq1  TGGAACCTTAGAACATTATTTCACAAAAGTCATTCTTTTTGTTGTTGTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTTAGAACATTATTTCACAAAAGTCATTCTTTTTGTTGTTGTTC  380

seq1  TTGTTGTTTTTTGAGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTTTTGAGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGGA  430

seq1  ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTTCCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTTCCTC  480

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCATCACTGCCCGGCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCATCACTGCCCGGCCAA  530

seq1  AAGTCATTCTTTTGAAAGACTCCAAAATAAAATTAAAAAAAAAACTTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTCTTTTGAAAGACTCCAAAATAAAATTAAAAAAAAAACTTAAC  580

seq1  GCATTATCATCACCAATGATTTATAGGACCTAATAATAACTATAGAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCATCACCAATGATTTATAGGACCTAATAATAACTATAGAAATA  630

seq1  AGCTATTTTTAATTAGACATGGAACATTGCCAAAAGAACTATACTGGCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTTTAATTAGACATGGAACATTGCCAAAAGAACTATACTGGCCT  680

seq1  ACAAGATAAATACTAATAAGATGTTAAATGTAAATCTTATAGAATATGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAAATACTAATAAGATGTTAAATGTAAATCTTATAGAATATGAT  730

seq1  ATCCAACCATAATGAAGTCATTCAAAAATAAAATGATAATATGATATATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACCATAATGAAGTCATTCAAAAATAAAATGATAATATGATATATA  780

seq1  AAACCCCAATTTTTGCTAATGAAATGTTATACTTCTATTTAATCTTCTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAATTTTTGCTAATGAAATGTTATACTTCTATTTAATCTTCTAA  830

seq1  TGTAAGTCAAAGAAAAATTCAAAAATAAATGAAAAATGGCCTATAGAGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCAAAGAAAAATTCAAAAATAAATGAAAAATGGCCTATAGAGCA  880

seq1  AAATACTAGTGACAATACATCGAGTCAGAGCTTGGTATATAGTATATATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTAGTGACAATACATCGAGTCAGAGCTTGGTATATAGTATATATG  930

seq1  GTGGTGGTTAGTGAGCAACAGGGAAAGGGGCCTGAAAATCTATGATGTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTTAGTGAGCAACAGGGAAAGGGGCCTGAAAATCTATGATGTAC  980

seq1  ATTTTCATCTGAAAAACTAGAAACAGAAAAATTAGTAGACACCAGTAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCTGAAAAACTAGAAACAGAAAAATTAGTAGACACCAGTAGAA  1030

seq1  TGAAACATTAGAGAGAAGAAATAGAAAAATCTACAATCAATACAAATAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATTAGAGAGAAGAAATAGAAAAATCTACAATCAATACAAATAGT  1080

seq1  TTTTAATTCCAAACAATCACTAGAGACGTTGGTGGTATCCAAAGGATGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCCAAACAATCACTAGAGACGTTGGTGGTATCCAAAGGATGAA  1130

seq1  AAGTCATTAAACAATGTCAATGAATTC  1175
      |||||||||||||||||||||||||||
seq2  AAGTCATTAAACAATGTCAATGAATTC  1157