BAC Information

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BAC

Clone NameB6Ng01-185B18
Chromosome10 (Build37)
Map Location 108,253,403 - 108,430,884
singlet/doubletdoublet
Overlap geneSyt1
Upstream geneEG628870, Ppp1r12a, Pawr, EG667814, EG368203
Downstream geneNav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185B18.bB6Ng01-185B18.g
ACCGA010309GA010310
length4541,164
definitionB6Ng01-185B18.b B6Ng01-185B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,253,403 - 108,253,862)(108,429,696 - 108,430,884)
sequence
ttccttggttcttaaatatgtggcattgaataggccagtccaaaaaattt
ctgtttgtcaaataaaagcatgctgtactagcatatgaaagagagagata
ttatcattccaggcttcaaggaactcattaaaatgtatgtaatccaggag
tgagtaaacaatacataaaagataactcagtggtctagcgaaagttagac
aataataatattaatcacatagaacagtgagcattatctttcttagtaat
cgtctgattaaataatagcgcttctttcagatgttcattatggatcccaa
tgggttttttttcctaatagaattttccataaaaattaacaatctaaccc
tagcttagaattccatggccagttgtctgactctttgctatattgttgat
gttcgggtctgtagaatcccaaggaacactggttcttgggcggggggggg
gggg

gaattcttttctctcttctgttaatactgtgtgccagtttaggggatgga
agaaggatgcacactcaaacaggacaggcaagacaaggcacagatgagta
aaagcctgaagcagaggcagaatcaaggtagtccagcgcctcttggctga
caggaaagcaatggtcattgtgtcaggtagagggaactgaggagctctgc
caaagccacccagttctgccgggcatgttggcttttattatgattgacat
gcagggtggggagcatggtagatttcaagtagaaccctaatgctctccaa
catagactcttgaagggtcatttagaaaacaggattcagtatctcgagca
gggatggaaaccagggaagaatttcctctttgttgttttgtgttgaatcg
atgtccttgcagatgttttctctgtgcatttctgaagatttcatagcctc
tggattaacaaagcagtgggcagttcaggctgctgatgtctcagaatgtc
gttttcttgtttttattaagagcggagctaaacacctctcatacgttgtc
caatttatagcactgatttgatttgatttttagcacggtttatgtgcttt
ctccatccatttgtcagcaaatgtgttgcctctgggcaagtagataaaaa
ttggcctaacttctaggcatctggaagtgtggcagaaaaaagaaactcac
tttttttgttctatccctgaaagatactaaatataccatctgatgacaga
aaaagaggcattaaggcttcatgaatttagagtgagtggaattggttctg
aaagtgatcacccatgaagcccctgatctgctattgctttatttttggaa
aattatatcgtgaaaaaaatacttttactttctaatattctctatttgtt
tcaccttaagcaaaaagacatctgtatgacatacccaatagtatcattcc
acagacggtgtattttggaaagttgcaagtattgatgcactacttaaata
ctgtcactaaatgttgctcactctattcaaagacaccaccaaacttgcag
ttagaggatctaagaatctgtgatgtagatctgtactacttaagaattct
cgatgttcgcaccatatatcgtgctagtttagtcaagctgtacactcagg
gtggctaactagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_108253403_108253862
seq2: B6Ng01-185B18.b_45_504

seq1  GAATTCTTCCTTGGTTCTTAAATATGTGGCATTGAATAGGCCAGTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTGGTTCTTAAATATGTGGCATTGAATAGGCCAGTCCAAA  50

seq1  AAATTTCTGTTTGTCAAATAAAAGCATGCTGTACTAGCATATGAAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGTTTGTCAAATAAAAGCATGCTGTACTAGCATATGAAAGAGA  100

seq1  GAGATATTATCATTCCAGGCTTCAAGGAACTCATTAAAATGTATGTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTATCATTCCAGGCTTCAAGGAACTCATTAAAATGTATGTAATC  150

seq1  CAGGAGTGAGTAAACAATACATAAAAGATAACTCAGTGGTCTAGCGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGAGTAAACAATACATAAAAGATAACTCAGTGGTCTAGCGAAAG  200

seq1  TTAGACAATAATAATATTAATCACATAGAACAGTGAGCATTATCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAATAATAATATTAATCACATAGAACAGTGAGCATTATCTTTCTT  250

seq1  AGTAATCGTCTGATTAAATAATAGCGCTTCTTTCAGATGTTCATTATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCGTCTGATTAAATAATAGCGCTTCTTTCAGATGTTCATTATGGA  300

seq1  TCCCAATGGGTTTTTTTTCCTAATAGAATTTTCCATAAAAATTAACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGGGTTTTTTTTCCTAATAGAATTTTCCATAAAAATTAACAATC  350

seq1  TAACCCTAGCTTAGAATTCCATGGCCAGTTGTCTGACTCTTTGCTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTAGCTTAGAATTCCATGGCCAGTTGTCTGACTCTTTGCTATATT  400

seq1  GTTGATGTTCGGGTCTGTAGAATCCCAAGGAACACTGGTTCTTGGGCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTCGGGTCTGTAGAATCCCAAGGAACACTGGTTCTTGGGCGGG  450

seq1  GGGGGGGGGG  460
      ||||||||||
seq2  GGGGGGGGGG  460


seq1: chr10_108429696_108430884
seq2: B6Ng01-185B18.g_63_1226 (reverse)

seq1  TTCTAGTTAGCCA-CCTGAGTG--CAGGCTGACTTTACACTAGGCGACGG  47
      ||||||||||||| ||||||||  |||  ||||  || |||||   ||| 
seq2  TTCTAGTTAGCCACCCTGAGTGTACAGCTTGAC--TAAACTAG--CACG-  45

seq1  ATAAATAATTGTGTGGCGGAAACATCTGGAGAATACCCTAAGTAGTACAG  97
          |||    | ||| |  ||||||  ||||||  | ||||||||||||
seq2  ----ATA----TATGGTGCGAACATC--GAGAAT-TCTTAAGTAGTACAG  84

seq1  ATCCTACATCCACCAGGATCTTAGATCCCTTCTAACTGCAAGTTTGTTGT  147
      || |||||||   |||  ||||||||||  |||||||||||||||| || 
seq2  AT-CTACATC--ACAGATTCTTAGATCC--TCTAACTGCAAGTTTGGTGG  129

seq1  TGTCTTTGAATAGAGTGAGCAACATTTAGGTGACAGTTAATTTTAAAGTA  197
      |||||||||||||||||||||||||||| ||||||||  ||||  |||||
seq2  TGTCTTTGAATAGAGTGAGCAACATTTA-GTGACAGT--ATTT--AAGTA  174

seq1  GTGCATCAAATACTTGCAACTTTCC-AAATACACCGTCTGTGGAATGATA  246
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGCATC-AATACTTGCAACTTTCCAAAATACACCGTCTGTGGAATGATA  223

seq1  CTATTGGGTATTGTCATACAGATGTCTTTTTGCTTAAGGTGAAAACAAAT  296
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  CTATTGGGTA-TGTCATACAGATGTCTTTTTGCTTAAGGTG-AAACAAAT  271

seq1  AGAGAATATTAGAAAGTAAAAGTATTTTTTTCACGATATAATTTTCCAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATTAGAAAGTAAAAGTATTTTTTTCACGATATAATTTTCCAAA  321

seq1  AATAAAGCAATAGCAGATCAGGGGCTTCATGGGTGATCACTTTCAGAACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAATAGCAGATCAGGGGCTTCATGGGTGATCACTTTCAGAACC  371

seq1  AATTCCACTCACTCTAAATTCATGAAGCCTTAATGCCTCTTTTTCTGTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACTCACTCTAAATTCATGAAGCCTTAATGCCTCTTTTTCTGTCA  421

seq1  TCAGATGGTATATTTAGTATCTTTCAGGGATAGAACAAAAAAAGTGAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGTATATTTAGTATCTTTCAGGGATAGAACAAAAAAAGTGAGTT  471

seq1  TCTTTTTTCTGCCACACTTCCAGATGCCTAGAAGTTAGGCCAATTTTTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTGCCACACTTCCAGATGCCTAGAAGTTAGGCCAATTTTTAT  521

seq1  CTACTTGCCCAGAGGCAACACATTTGCTGACAAATGGATGGAGAAAGCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCCCAGAGGCAACACATTTGCTGACAAATGGATGGAGAAAGCAC  571

seq1  ATAAACCGTGCTAAAAATCAAATCAAATCAGTGCTATAAATTGGACAACG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCGTGCTAAAAATCAAATCAAATCAGTGCTATAAATTGGACAACG  621

seq1  TATGAGAGGTGTTTAGCTCCGCTCTTAATAAAAACAAGAAAACGACATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGGTGTTTAGCTCCGCTCTTAATAAAAACAAGAAAACGACATTC  671

seq1  TGAGACATCAGCAGCCTGAACTGCCCACTGCTTTGTTAATCCAGAGGCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCAGCAGCCTGAACTGCCCACTGCTTTGTTAATCCAGAGGCTA  721

seq1  TGAAATCTTCAGAAATGCACAGAGAAAACATCTGCAAGGACATCGATTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTTCAGAAATGCACAGAGAAAACATCTGCAAGGACATCGATTCA  771

seq1  ACACAAAACAACAAAGAGGAAATTCTTCCCTGGTTTCCATCCCTGCTCGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACAACAAAGAGGAAATTCTTCCCTGGTTTCCATCCCTGCTCGA  821

seq1  GATACTGAATCCTGTTTTCTAAATGACCCTTCAAGAGTCTATGTTGGAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAATCCTGTTTTCTAAATGACCCTTCAAGAGTCTATGTTGGAGA  871

seq1  GCATTAGGGTTCTACTTGAAATCTACCATGCTCCCCACCCTGCATGTCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGGGTTCTACTTGAAATCTACCATGCTCCCCACCCTGCATGTCAA  921

seq1  TCATAATAAAAGCCAACATGCCCGGCAGAACTGGGTGGCTTTGGCAGAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAAAAGCCAACATGCCCGGCAGAACTGGGTGGCTTTGGCAGAGC  971

seq1  TCCTCAGTTCCCTCTACCTGACACAATGACCATTGCTTTCCTGTCAGCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTTCCCTCTACCTGACACAATGACCATTGCTTTCCTGTCAGCCA  1021

seq1  AGAGGCGCTGGACTACCTTGATTCTGCCTCTGCTTCAGGCTTTTACTCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGCTGGACTACCTTGATTCTGCCTCTGCTTCAGGCTTTTACTCAT  1071

seq1  CTGTGCCTTGTCTTGCCTGTCCTGTTTGAGTGTGCATCCTTCTTCCATCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTTGTCTTGCCTGTCCTGTTTGAGTGTGCATCCTTCTTCCATCC  1121

seq1  CCTAAACTGGCACACAGTATTAACAGAAGAGAGAAAAGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTGGCACACAGTATTAACAGAAGAGAGAAAAGAATTC  1164


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