BAC Information

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BAC

Clone NameB6Ng01-186K08
Chromosome10 (Build37)
Map Location 63,215,016 - 63,337,428
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneCcar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186K08.bB6Ng01-186K08.g
ACCGA011431GA011432
length9321,137
definitionB6Ng01-186K08.b B6Ng01-186K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,336,497 - 63,337,428)(63,215,016 - 63,215,859)
sequence
gaattcactggggagtctcattttaatatttacacatctaatgagaatgg
tgactgtctcacatgcacaccattcaaagatcctagcactcagcaggcta
aggagaactacaagtttgacgcagactgaggtattcagggaagccctgtt
ccagataatgaacagtaacaacaagactgcttataatgcttgattgaaaa
gggattctggccccttcctttcagagtagctttaagaacgtaactcaaac
attagcacaaaaaagtactaagacacaaaagtctgctgctcagagtacgt
aatggaacatttgaaattgtctcgtgactctacgatatcaaaaaagtcta
cttttgctgttcctatacagttcatttatttccatttctctcagataacc
ttaaaagttttatcattgaatttatttttctattagtatgtggaaaatct
aatttgagaaaatgaatcttcaggaaaaaaaatgaacttttttcaactga
aagtaacagatgagaggtgatctgtggtataaagagaaaggcacagcaac
caactcagtccttagttcccggaatccagtatggtaaagacatcagggta
acattttgacccctggggcttctctctttttttttttaacttatgtatct
catgaagataaattattcagtcattgagattacttgttaaagtaaggaat
ttactgagggattagagagatggcttggcatttaagaacactcgaggcac
ttccagtagacctaagttgggttcccaacactcacaaagcagctcacatc
catccaaagtccagttccaggtcatccacagccttcttttcttcttcttc
tttcttccttcttccttcttccttctttcttctcttctcttctttctcct
tcctccttcctcctccttcctcctcctcctcc
gaattctttgtttagctctgagccccatttttaaaatggggttatttgat
tttctggagtccaccttcttgagttctttatatacattggatattagtcc
cctatcttatttaggataggtaaagatcctttcccaatcttttggtggcc
tttttgtcttattgacggtatcttttgccttagagaagctttgcagtttt
atgaggtcccatttgtcagttctcgatcgtacagcacaagccattgctgt
tctattcaggaatttttcccctgtgctcatattttcaaggctcttcccac
tttctcctctataagtttcactgtctctggttttatgtggagctccttaa
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagttttttttttttttaa
tcacaattgctctttagtaaagctttaggtcaggcatggtgattccacca
gaggttcttttatctttgagaagagtttttgctatcctaggtttttttgt
tattccagatgaatttgcagattgctctttctaattcgttgaagaattga
gttggaattttgatggggattgcattgaatctgtagattagctctggtcc
ttaaattatggtctcagtgtagctcttaaaaatgccagtgaaccctttct
agatagacagtgggaaagaatgtgttggagttggaagacctaagacagtg
catcgtttcataatcaaggttgtcaggtaatgcagcatgtgagaatcaca
ggtctttgtcaccttacagcaaatatgggaggctgccctggattctaaat
ttactttttatgccttatggatattggtcacaccttgggtagcctattat
gagagactgtgtacgtagacttttcttcctgcatgctcttaaactgatct
ttagacatgtgtgaagggtgatatataggcatattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63336497_63337428
seq2: B6Ng01-186K08.b_47_978 (reverse)

seq1  GGAGGAGGAGGAGGAAGGAGGAGGAAGGAGGAAGGAGAAAGAAGAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAAGGAGGAGGAAGGAGGAAGGAGAAAGAAGAGAAGA  50

seq1  GAAGAAAGAAGGAAGAAGGAAGAAGGAAGAAAGAAGAAGAAGAAAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAAGGAAGAAGGAAGAAGGAAGAAAGAAGAAGAAGAAAAGAAG  100

seq1  GCTGTGGATGACCTGGAACTGGACTTTGGATGGATGTGAGCTGCTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGATGACCTGGAACTGGACTTTGGATGGATGTGAGCTGCTTTGTG  150

seq1  AGTGTTGGGAACCCAACTTAGGTCTACTGGAAGTGCCTCGAGTGTTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGGAACCCAACTTAGGTCTACTGGAAGTGCCTCGAGTGTTCTTA  200

seq1  AATGCCAAGCCATCTCTCTAATCCCTCAGTAAATTCCTTACTTTAACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAAGCCATCTCTCTAATCCCTCAGTAAATTCCTTACTTTAACAAG  250

seq1  TAATCTCAATGACTGAATAATTTATCTTCATGAGATACATAAGTTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAATGACTGAATAATTTATCTTCATGAGATACATAAGTTAAAAA  300

seq1  AAAAAAGAGAGAAGCCCCAGGGGTCAAAATGTTACCCTGATGTCTTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGAGAAGCCCCAGGGGTCAAAATGTTACCCTGATGTCTTTACC  350

seq1  ATACTGGATTCCGGGAACTAAGGACTGAGTTGGTTGCTGTGCCTTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGATTCCGGGAACTAAGGACTGAGTTGGTTGCTGTGCCTTTCTCT  400

seq1  TTATACCACAGATCACCTCTCATCTGTTACTTTCAGTTGAAAAAAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCACAGATCACCTCTCATCTGTTACTTTCAGTTGAAAAAAGTTCA  450

seq1  TTTTTTTTCCTGAAGATTCATTTTCTCAAATTAGATTTTCCACATACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTGAAGATTCATTTTCTCAAATTAGATTTTCCACATACTAA  500

seq1  TAGAAAAATAAATTCAATGATAAAACTTTTAAGGTTATCTGAGAGAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATAAATTCAATGATAAAACTTTTAAGGTTATCTGAGAGAAATG  550

seq1  GAAATAAATGAACTGTATAGGAACAGCAAAAGTAGACTTTTTTGATATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATGAACTGTATAGGAACAGCAAAAGTAGACTTTTTTGATATCG  600

seq1  TAGAGTCACGAGACAATTTCAAATGTTCCATTACGTACTCTGAGCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCACGAGACAATTTCAAATGTTCCATTACGTACTCTGAGCAGCAG  650

seq1  ACTTTTGTGTCTTAGTACTTTTTTGTGCTAATGTTTGAGTTACGTTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGTCTTAGTACTTTTTTGTGCTAATGTTTGAGTTACGTTCTTA  700

seq1  AAGCTACTCTGAAAGGAAGGGGCCAGAATCCCTTTTCAATCAAGCATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTCTGAAAGGAAGGGGCCAGAATCCCTTTTCAATCAAGCATTAT  750

seq1  AAGCAGTCTTGTTGTTACTGTTCATTATCTGGAACAGGGCTTCCCTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCTTGTTGTTACTGTTCATTATCTGGAACAGGGCTTCCCTGAAT  800

seq1  ACCTCAGTCTGCGTCAAACTTGTAGTTCTCCTTAGCCTGCTGAGTGCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTCTGCGTCAAACTTGTAGTTCTCCTTAGCCTGCTGAGTGCTAG  850

seq1  GATCTTTGAATGGTGTGCATGTGAGACAGTCACCATTCTCATTAGATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGAATGGTGTGCATGTGAGACAGTCACCATTCTCATTAGATGTG  900

seq1  TAAATATTAAAATGAGACTCCCCAGTGAATTC  932
      ||||||||||||||||||||||||||||||||
seq2  TAAATATTAAAATGAGACTCCCCAGTGAATTC  932

seq1: chr10_63215016_63215859
seq2: B6Ng01-186K08.g_367_1205

seq1  ACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGAGCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGAGCTCCTT  50

seq1  AATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTC  100

seq1  GCATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAA  150

seq1  ATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAA  200

seq1  GTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTATTCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTATTCCATT  250

seq1  GGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTTTTTTTTTT  300

seq1  AATCACAATTGCTCTTTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATTGCTCTTTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCAC  350

seq1  CAGAGGTTCTTTTATCTTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCTTTTATCTTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTT  400

seq1  GTTATTCCAGATGAATTTGCAGATTGCTCTTTCTAATTCGTTGAAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCAGATGAATTTGCAGATTGCTCTTTCTAATTCGTTGAAGAATT  450

seq1  GAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTAGCTCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTAGCTCTGGT  500

seq1  CCTTAAATTATGGTCTCAGTGTAGCTCTTAAAAAATGCCAGTGAACCCTT  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTTAAATTATGGTCTCAGTGTAGCTCTT-AAAAATGCCAGTGAACCCTT  549

seq1  TCTAGATAGACAAGTGGGAAAGAAATGTGTTGGAGTTGGAAGACCTAAGA  600
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TCTAGATAGAC-AGTGGGAAAG-AATGTGTTGGAGTTGGAAGACCTAAGA  597

seq1  CAGTGCATCGTTTCATAATCAAGGTTGTCAGGTAATGCAGCATGTGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATCGTTTCATAATCAAGGTTGTCAGGTAATGCAGCATGTGAGAA  647

seq1  TCACA-GTCCTTGTCACCTTACAGCAAATATGGAAGGCTG-CCTGGATTC  698
      ||||| ||| ||||||||||||||||||||||| |||||| |||||||||
seq2  TCACAGGTCTTTGTCACCTTACAGCAAATATGGGAGGCTGCCCTGGATTC  697

seq1  TAATTTTAC-TTTTATTGCTTATGGATTATTGTCACAACTTTGGTAG-CT  746
      ||| ||||| ||||||  |||||||||  | |||||| ||| ||||| ||
seq2  TAAATTTACTTTTTATGCCTTATGGATATTGGTCACACCTTGGGTAGCCT  747

seq1  ATTATGAAGAGACTGTTGTAACGTAGACTTTTCTGTCCTTGCATGCTCTT  796
      |||||| |||||||| ||| |||||||||||||| ||| ||||||||| |
seq2  ATTATG-AGAGACTG-TGT-ACGTAGACTTTTCT-TCC-TGCATGCTC-T  791

seq1  TTAACTGATCTTTAGACATGTGTGATAGGTGGTTATATA-GTATATTGA  844
      | ||||||||||||||||||||||| |||  | |||||| | |||||||
seq2  TAAACTGATCTTTAGACATGTGTGA-AGGGTGATATATAGGCATATTGA  839