BAC Information

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BAC

Clone NameB6Ng01-186P06
Chromosome10 (Build37)
Map Location 12,489,612 - 12,647,842
singlet/doubletdoublet
Overlap geneUtrn, LOC665172
Upstream genenone
Downstream geneStx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186P06.bB6Ng01-186P06.g
ACCGA011663GA011664
length1,1181,096
definitionB6Ng01-186P06.b B6Ng01-186P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,489,612 - 12,490,730)(12,646,737 - 12,647,842)
sequence
gaattccaggacagccaagacaaatcctgactcattaaaacaataacaaa
caaaacaaaacaaaacaaaatcctttacaataaagataagaaaaatggaa
aatattcacagaaatataacaatattttatttttaaacatatttcaaaag
tttcaactttcatgatcatattaagtctcatgatatagcccagcagtagt
gaatgtgcacacacccaaagctctgcctccaatccccagaagggtgaggt
gctggggagtaattaaagtatctaatgatgtacagagttttctctgtagg
ttgaccacagaaaggagtaactaccaatttacctttctatgccatctact
gtagaataacataaaatttgaaaataaagtcccacataaagagatgttta
taagaacaaagcagtgtttcccctaacatagcctagaactttttagtcaa
atcaacacatatctatatctcggtgcccaacatgaaatggagtgtttggc
catcaaagataacatccaggcattcaaaaatattccaaaatgtacagata
ctcttttgtatttatttcccctaaacaacttgaaagatttgtattcaaca
catctatagactgcccactcctttgcccattctcccctcctctcctctct
aaccccatgatctacaaattttcagtaaaggaaaggcttttcagtcatgg
aaaatataaaaaatgtgaacagccaggaagggagctcccaaggaacacaa
gatgtgctcctagcacctgggctggacagctcaaaactgcctccaaatca
aggggccaggggctttgggggtccttgaacacttttattcctgtacacac
acatgcacacacacacaattaaaaataaaatactttctaaggaaaaaaaa
aaagaatgagaagccatttgttagtagagtaactgctctcatgtcctcat
tggtactcagaaacaactgaaaatctgccatgctgtatcatttacccttc
aacttcctataaaatgacacagaagcttgaagagcctcactggggttgta
gccccacagtagagtgatggcctaagctgcctcaggattcaagatcaact
tcagttccagaaaaagat

gaattctttctctcgtgtgcaatctctagatttaaatctctctctctctt
ttgggagggcatgggggagtagaaaaagaatcattagagaagaagaagac
gtttaggggaggaaaacagaagaagaaaggacagtaaaatacatctaact
tgaaagagaaatgggaactattcgggcaaggatgagagccaggactggag
ggtcatgggtcacaacataaggtccattgggaaaagggatgagctgccac
acaaaatataatgacacttatatataaaaatgtcataatgaagttcactt
ggctttgagtgctaattttaacatcaattttaaaaataaatttaaagcaa
gaaactgagacaacagtgtgtgtgtctgtgatacacacacacaaagcagt
aacatagccatttatcatttttattaatgctgattgctgcaggtaaatat
gatggattggttattgtgccacaggccaaggcagagagggtctgttcaca
ctagcatcaccacaaaggcaggaatcacatattgcttggtagcagctgcc
ccgcctttggccatcagaaactctcagcctcattctcccttatgggacca
ttgtttcttatgctaccctgatggaaatactgtcctatggaacatgccta
catgaaatcaccttaattctcccttcctcttgtcccttgtccccagtaac
cttatatgtggcattgctaaaacacagcccttaattcaaagggaataagg
gaatttattctggagccaaatatgaatagccatagcctgggaacccagat
ttgcatttctttgaatatcatattccaatgtgttaagaatttgcgaagtt
tttgtttgtttgttaattaaagaataaaagaagtcataagtcagacaatt
tcaaagacattgataagaataacttgtaggttgttgcacaagcatggaaa
tcttatttggcttaatggatatttgatgattaaaaaaatagatttattta
tgtgcatcatggttgcccaacagcatatatttatggtggagtgtcaaatt
cctgggactggaataacgatcgtcgtgagctgcatgcaggtgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12489612_12490730
seq2: B6Ng01-186P06.b_48_1165

seq1  GAATTCCAGGACAGCCAAGACAAATCCTGACTCATTAAAACAATAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAAGACAAATCCTGACTCATTAAAACAATAACAAA  50

seq1  CAAAACAAAACAAAACAAAATCCTTTACAATAAAGATAAGAAAAATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAATCCTTTACAATAAAGATAAGAAAAATGGAA  100

seq1  AATATTCACAGAAATATAACAATATTTTATTTTTAAACATATTTCAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACAGAAATATAACAATATTTTATTTTTAAACATATTTCAAAAG  150

seq1  TTTCAACTTTCATGATCATATTAAGTCTCATGATATAGCCCAGCAGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTTTCATGATCATATTAAGTCTCATGATATAGCCCAGCAGTAGT  200

seq1  GAATGTGCACACACCCAAAGCTCTGCCTCCAATCCCCAGAAGGGTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCACACACCCAAAGCTCTGCCTCCAATCCCCAGAAGGGTGAGGT  250

seq1  GCTGGGGAGTAATTAAAGTATCTAATGATGTACAGAGTTTTCTCTGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAGTAATTAAAGTATCTAATGATGTACAGAGTTTTCTCTGTAGG  300

seq1  TTGACCACAGAAAGGAGTAACTACCAATTTACCTTTCTATGCCATCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACAGAAAGGAGTAACTACCAATTTACCTTTCTATGCCATCTACT  350

seq1  GTAGAATAACATAAAATTTGAAAATAAAGTCCCACATAAAGAGATGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAACATAAAATTTGAAAATAAAGTCCCACATAAAGAGATGTTTA  400

seq1  TAAGAACAAAGCAGTGTTTCCCCTAACATAGCCTAGAACTTTTTAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAAAGCAGTGTTTCCCCTAACATAGCCTAGAACTTTTTAGTCAA  450

seq1  ATCAACACATATCTATATCTCGGTGCCCAACATGAAATGGAGTGTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACATATCTATATCTCGGTGCCCAACATGAAATGGAGTGTTTGGC  500

seq1  CATCAAAGATAACATCCAGGCATTCAAAAATATTCCAAAATGTACAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGATAACATCCAGGCATTCAAAAATATTCCAAAATGTACAGATA  550

seq1  CTCTTTTGTATTTATTTCCCCTAAACAACTTGAAAGATTTGTATTCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTATTTATTTCCCCTAAACAACTTGAAAGATTTGTATTCAACA  600

seq1  CATCTATAGACTGCCCACTCCTTTGCCCATTCTCCCCTCCTCTCCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATAGACTGCCCACTCCTTTGCCCATTCTCCCCTCCTCTCCTCTCT  650

seq1  AACCCCATGATCTACAAATTTTCAGTAAAGGAAAGGCTTTTCAGTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATGATCTACAAATTTTCAGTAAAGGAAAGGCTTTTCAGTCATGG  700

seq1  AAAATATAAAAAATGTGAACAGCCAGGAAGGGAGCTCCCAAGGAACACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAAAAATGTGAACAGCCAGGAAGGGAGCTCCCAAGGAACACAA  750

seq1  GATGTGCTCCTAGCACCTGGGCTGGACAGCTCAAAACTGCCTCCAAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTCCTAGCACCTGGGCTGGACAGCTCAAAACTGCCTCCAAATCA  800

seq1  AGGGGCCAGGGGCTTTGGGGGTCCTTGAACACTTTTATTCCTGTACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCAGGGGCTTTGGGGGTCCTTGAACACTTTTATTCCTGTACACAC  850

seq1  ACATGCACACACACACAATTAAAAATAAAATACTTTCTAAGG-AAAAAAA  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACATGCACACACACACAATTAAAAATAAAATACTTTCTAAGGAAAAAAAA  900

seq1  AAAGAATGAGAAGCCA-TTGTTAGTAGAGTAACTGCTCTCCATGTCCTCA  948
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAAGAATGAGAAGCCATTTGTTAGTAGAGTAACTGCTCT-CATGTCCTCA  949

seq1  TTGGTAACTCAGAAACAACTGAAAATCTGCCATGCTGTTATCATTTACCC  998
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGT-ACTCAGAAACAACTGAAAATCTGCCATGCTG-TATCATTTACCC  997

seq1  TTCAACTTCCTATAAAATGACACAG-AGCTTGAAGAGCCTCACTGGGGTT  1047
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCAACTTCCTATAAAATGACACAGAAGCTTGAAGAGCCTCACTGGGGTT  1047

seq1  GTAG-CCCACAGTAGAGTGATGGCCTAGCGTGCCTCAGGATCCAGGATCA  1096
      |||| ||||||||||||||||||||||   ||||||||||| || |||||
seq2  GTAGCCCCACAGTAGAGTGATGGCCTAAGCTGCCTCAGGATTCAAGATCA  1097

seq1  ACTCCAGTTCCACAGAAAAAGAT  1119
      ||| ||||||  |||||||||||
seq2  ACTTCAGTTC--CAGAAAAAGAT  1118


seq1: chr10_12646737_12647842
seq2: B6Ng01-186P06.g_65_1160 (reverse)

seq1  CCAGCACCTGCATAGCAGCTCACAACGATCTGTAACTCCAGTTCCAGGGA  50
      ||||||||||||| ||||||||| |||||| || | |||||| ||| |||
seq2  CCAGCACCTGCAT-GCAGCTCACGACGATC-GTTATTCCAGTCCCA-GGA  47

seq1  ATTTGACACTTCCACATAAATATAT-CTGTGGGCAAAACACTGATGCACA  99
      |||||||||| |  ||||||||||| |||| ||  || || |||||||||
seq2  ATTTGACACTCCACCATAAATATATGCTGTTGGGCAACCA-TGATGCACA  96

seq1  TAAAATAAATCTATTTTTTTTAATCATCAAATATCATTTAAGGCAAATAA  149
      | ||||||||||| |||||||||||||||||||||  ||||| |||||||
seq2  T-AAATAAATCTA-TTTTTTTAATCATCAAATATCCATTAAGCCAAATAA  144

seq1  AGATTCCATGCTTGTGGCAACAACCTACAAGTTATTCTTATCAATGTCTT  199
         |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATTTCCATGCTTGT-GCAACAACCTACAAGTTATTCTTATCAATGTCTT  193

seq1  TGAAAATTGTCTGACTTATGACTTTCTTTTATTCTTTAATTAAACAAACA  249
      || ||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TG-AAATTGTCTGACTTATGAC-TTCTTTTATTCTTTAATT-AACAAACA  240

seq1  AACAAAAAACTTCGCAAATTCTTAACACATTGGAATATGATATTCAAAGA  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAC-AAAAACTTCGCAAATTCTTAACACATTGGAATATGATATTCAAAGA  289

seq1  AATGCAAATCTGGGTTCCCAGGCTATGGCTATTCATATTTGGCTCCAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATCTGGGTTCCCAGGCTATGGCTATTCATATTTGGCTCCAGAA  339

seq1  TAAATTCCCTTATTCCCTTTGAATTAAGGGCTGTGTTTTAGCAATGCCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCCTTATTCCCTTTGAATTAAGGGCTGTGTTTTAGCAATGCCAC  389

seq1  ATATAAGGTTACTGGGGACAAGGGACAAGAGGAAGGGAGAATTAAGGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGTTACTGGGGACAAGGGACAAGAGGAAGGGAGAATTAAGGTGA  439

seq1  TTTCATGTAGGCATGTTCCATAGGACAGTATTTCCATCAGGGTAGCATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTAGGCATGTTCCATAGGACAGTATTTCCATCAGGGTAGCATAA  489

seq1  GAAACAATGGTCCCATAAGGGAGAATGAGGCTGAGAGTTTCTGATGGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGGTCCCATAAGGGAGAATGAGGCTGAGAGTTTCTGATGGCCA  539

seq1  AAGGCGGGGCAGCTGCTACCAAGCAATATGTGATTCCTGCCTTTGTGGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGGGGCAGCTGCTACCAAGCAATATGTGATTCCTGCCTTTGTGGTG  589

seq1  ATGCTAGTGTGAACAGACCCTCTCTGCCTTGGCCTGTGGCACAATAACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTGTGAACAGACCCTCTCTGCCTTGGCCTGTGGCACAATAACCA  639

seq1  ATCCATCATATTTACCTGCAGCAATCAGCATTAATAAAAATGATAAATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCATATTTACCTGCAGCAATCAGCATTAATAAAAATGATAAATGG  689

seq1  CTATGTTACTGCTTTGTGTGTGTGTATCACAGACACACACACTGTTGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTACTGCTTTGTGTGTGTGTATCACAGACACACACACTGTTGTCT  739

seq1  CAGTTTCTTGCTTTAAATTTATTTTTAAAATTGATGTTAAAATTAGCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTGCTTTAAATTTATTTTTAAAATTGATGTTAAAATTAGCACT  789

seq1  CAAAGCCAAGTGAACTTCATTATGACATTTTTATATATAAGTGTCATTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAAGTGAACTTCATTATGACATTTTTATATATAAGTGTCATTAT  839

seq1  ATTTTGTGTGGCAGCTCATCCCTTTTCCCAATGGACCTTATGTTGTGACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGTGGCAGCTCATCCCTTTTCCCAATGGACCTTATGTTGTGACC  889

seq1  CATGACCCTCCAGTCCTGGCTCTCATCCTTGCCCGAATAGTTCCCATTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCCTCCAGTCCTGGCTCTCATCCTTGCCCGAATAGTTCCCATTTC  939

seq1  TCTTTCAAGTTAGATGTATTTTACTGTCCTTTCTTCTTCTGTTTTCCTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAGTTAGATGTATTTTACTGTCCTTTCTTCTTCTGTTTTCCTCC  989

seq1  CCTAAACGTCTTCTTCTTCTCTAATGATTCTTTTTCTACTCCCCCATGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACGTCTTCTTCTTCTCTAATGATTCTTTTTCTACTCCCCCATGCC  1039

seq1  CTCCCAAAAGAGAGAGAGAGATTTAAATCTAGAGATTGCACACGAGAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAAAGAGAGAGAGAGATTTAAATCTAGAGATTGCACACGAGAGAA  1089

seq1  AGAATTC  1106
      |||||||
seq2  AGAATTC  1096


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