BAC Information

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BAC

Clone NameB6Ng01-188C08
Chromosome10 (Build37)
Map Location 4,573,306 - 4,743,027
singlet/doubletdoublet
Overlap geneVip, Myct1
Upstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395
Downstream geneSyne1, Esr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188C08.bB6Ng01-188C08.g
ACCGA012529GA012530
length1,1151,129
definitionB6Ng01-188C08.b B6Ng01-188C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,741,907 - 4,743,027)(4,573,306 - 4,574,138)
sequence
gaattcagaacaaatccaggctctgtgaagtggagcatgctggtgtgcaa
tggaaagtctgtggcgattcgtgaggtggagtttcactctcacagcacag
acagtgagagacaagagctggcgctcgaggcgtgtgcgcatgggttatgt
cattatagcgtcaggaatctgagagtctgggtgttcaggaaatatgacca
taaatcagtcagccctgcagatggttctatcacccacacttcctacctta
gatagcgttcaggaagtggggttccacaatggctgcaggtgagagaagtc
agtgtgacacggcagagatggtggaaacacaggctcagcgttgcaatgac
caaggggagctttagctgcagtcatagttcaaaaggaaatgagctgtgga
catttgcagttctgtaagaaaaactgatatgctaaagtccagctcccgtg
agacctttttaatttctaaacgtggtaaagaaacacaagcgacccatgct
tctttgtagctttctgtttgagtaaatggaagtctggtcattctctatta
attcgaagtatgtcaaaattcagcatcattccacgaattagagttcatat
ctctaccctgtgatttttaactgaatgtctttgaaatcagggctatcgtt
tactggctgattctttgtttcagaggaccttataatgtccttcaccgtat
ccgtggcgattgggcttgcaatcggaggatttctctgggcgctgttcgtt
tttctgtctcgaagaagaagagccagtgcacccatttcgcagtggagtcc
caccaggagacccaggtcttcctacaaccacggcctcaacaggactgggt
tctaccgccacagtggctatgaacggcgaagcaacctcagcctggccagc
ctcactttccagagacaagcttccatggagctggtcaactccttcccaag
gaatcaagcttagggcttcgactttccatccctttcctgcaatgccccac
acttcccggtggaaacggagagtcagctgatgaccctgtctgcctcacca
accccttccacctcagcacgcacacagccgagccgtcagacttcgctgtt
cagcaacagcctgcg

gaattcagtagaaatccagtgaggttacctattcagtaacattcaaattt
acttcaagtagagacagtgaaactaattaggcattacaaagaacagagct
ggaatagctcagggctagtctgcagagtgtttacttaggacagtagccag
tctcacccaaacaagggaatacaccatggcctagctaataggtgggttta
ccatgtaagagttagggaatcccacttaaacaagaatcttctctacagcc
aggtataacaggctgcattgcatattagaagcaagttggtgaattcttct
gacaaatggagattctccacagatacttaaaagaacagccaagttacact
catacaagaatttatcaaggcctaggaaataggaggtttgtggtattgca
ttattcatgagaaggtctgctagagcagaaccccctagtgctagctttca
caaggctcaaagagtagcacaaattgtgactagggtgtgaaatcctcacc
tgtcattagctgaccctaggcagggctctcttattttactgtaaatatta
cctggttcctgtaagtcttcttgaagtcattcctctgttttgtgtcagat
aactgcaatgtactttgtctactgtgacaccctacccctttgttttctgt
attatataagattggtgttcactttgtgacaatacattcagattctacac
aatctcttgtgtcacttctgtttgtcattcaccgactccttgtccatcta
caaccagagacttgttctacacagacagggaccaaagagggtctacggca
gaactctggagtgagctgtcggaatggagattagaaacaagcagcttcag
tgacagcgggtgttgagcattcattcatccatccattcattcaagagatt
attatacatgcggtgctggactctctcctttgcctgcttgccttgtggga
ctgagcaactgctagaccccctggacttccattcacagctgctgctgacc
attgctggaattggactgcagactgtaagtcatcacaattctctactata
tagagacatccataagtcctgtgtctctagagacctgatgagtacagaag
tggattaggcgagggagaatcagcctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_4741907_4743027
seq2: B6Ng01-188C08.b_49_1163 (reverse)

seq1  CGCAAGCTGTTGCTGGACCAGCGGAAGTCTGGCCGGCTCGGGCTGTGTGC  50
      |||| ||||||||| || |||| ||||||| | |||||| ||||||||||
seq2  CGCAGGCTGTTGCT-GAACAGC-GAAGTCT-GACGGCTC-GGCTGTGTGC  46

seq1  GGTGCTGAGGGTGGAAGGGGTGGTGGAGGCAGACAGGGTCATCAGCTGAC  100
       ||||||| |||||||||||| |  |||||||||||||||||||||||||
seq2  -GTGCTGA-GGTGGAAGGGGTTGGTGAGGCAGACAGGGTCATCAGCTGAC  94

seq1  TCTCCGTTTCCACC-GGAAGTGGTGGGCATTGCAGG-AAGGGATGGAAAG  148
      |||||||||||||| |||||||  |||||||||||| |||||||||||||
seq2  TCTCCGTTTCCACCGGGAAGTGTGGGGCATTGCAGGAAAGGGATGGAAAG  144

seq1  TCGAAGCCCTAAAGCTTGATTTCCTTGGGAAGGAGTTGACCAGCTCCATG  198
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TCGAAGCCCT-AAGCTTGA-TTCCTTGGGAAGGAGTTGACCAGCTCCATG  192

seq1  GAAGCTTGTCTCTGGAAAGTGAGGCTGGCCAGGCTGAGGTTGCTTCGCCG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTGTCTCTGGAAAGTGAGGCTGGCCAGGCTGAGGTTGCTTCGCCG  242

seq1  TTCATAGCCACTGTGGCGGTAGAACCCAGTCCTGTTGAGGCCGTGGTTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCCACTGTGGCGGTAGAACCCAGTCCTGTTGAGGCCGTGGTTGT  292

seq1  AGGAAGACCTGGGTCTCCTGGTGGGACTCCACTGCGAAATGGGTGCACTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACCTGGGTCTCCTGGTGGGACTCCACTGCGAAATGGGTGCACTG  342

seq1  GCTCTTCTTCTTCGAGACAGAAAAACGAACAGCGCCCAGAGAAATCCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTTCTTCGAGACAGAAAAACGAACAGCGCCCAGAGAAATCCTCC  392

seq1  GATTGCAAGCCCAATCGCCACGGATACGGTGAAGGACATTATAAGGTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAAGCCCAATCGCCACGGATACGGTGAAGGACATTATAAGGTCCT  442

seq1  CTGAAACAAAGAATCAGCCAGTAAACGATAGCCCTGATTTCAAAGACATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAAAGAATCAGCCAGTAAACGATAGCCCTGATTTCAAAGACATT  492

seq1  CAGTTAAAAATCACAGGGTAGAGATATGAACTCTAATTCGTGGAATGATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAAATCACAGGGTAGAGATATGAACTCTAATTCGTGGAATGATG  542

seq1  CTGAATTTTGACATACTTCGAATTAATAGAGAATGACCAGACTTCCATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTGACATACTTCGAATTAATAGAGAATGACCAGACTTCCATTT  592

seq1  ACTCAAACAGAAAGCTACAAAGAAGCATGGGTCGCTTGTGTTTCTTTACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACAGAAAGCTACAAAGAAGCATGGGTCGCTTGTGTTTCTTTACC  642

seq1  ACGTTTAGAAATTAAAAAGGTCTCACGGGAGCTGGACTTTAGCATATCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTAGAAATTAAAAAGGTCTCACGGGAGCTGGACTTTAGCATATCAG  692

seq1  TTTTTCTTACAGAACTGCAAATGTCCACAGCTCATTTCCTTTTGAACTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTACAGAACTGCAAATGTCCACAGCTCATTTCCTTTTGAACTAT  742

seq1  GACTGCAGCTAAAGCTCCCCTTGGTCATTGCAACGCTGAGCCTGTGTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGCTAAAGCTCCCCTTGGTCATTGCAACGCTGAGCCTGTGTTTC  792

seq1  CACCATCTCTGCCGTGTCACACTGACTTCTCTCACCTGCAGCCATTGTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTCTGCCGTGTCACACTGACTTCTCTCACCTGCAGCCATTGTGG  842

seq1  AACCCCACTTCCTGAACGCTATCTAAGGTAGGAAGTGTGGGTGATAGAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACTTCCTGAACGCTATCTAAGGTAGGAAGTGTGGGTGATAGAAC  892

seq1  CATCTGCAGGGCTGACTGATTTATGGTCATATTTCCTGAACACCCAGACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGGGCTGACTGATTTATGGTCATATTTCCTGAACACCCAGACT  942

seq1  CTCAGATTCCTGACGCTATAATGACATAACCCATGCGCACACGCCTCGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTCCTGACGCTATAATGACATAACCCATGCGCACACGCCTCGAG  992

seq1  CGCCAGCTCTTGTCTCTCACTGTCTGTGCTGTGAGAGTGAAACTCCACCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGCTCTTGTCTCTCACTGTCTGTGCTGTGAGAGTGAAACTCCACCT  1042

seq1  CACGAATCGCCACAGACTTTCCATTGCACACCAGCATGCTCCACTTCACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAATCGCCACAGACTTTCCATTGCACACCAGCATGCTCCACTTCACA  1092

seq1  GAGCCTGGATTTGTTCTGAATTC  1121
      |||||||||||||||||||||||
seq2  GAGCCTGGATTTGTTCTGAATTC  1115


seq1: chr10_4573306_4574138
seq2: B6Ng01-188C08.g_365_1190

seq1  AAATGGAGATTCTCCACAGATACTTAAAAGAACAGCCAAGTTACACTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGATTCTCCACAGATACTTAAAAGAACAGCCAAGTTACACTCAT  50

seq1  ACAAGAATTTATCAAGGCCTAGGAAATAGGAGGTTTGTGGTATTGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATTTATCAAGGCCTAGGAAATAGGAGGTTTGTGGTATTGCATTA  100

seq1  TTCATGAGAAGGTCTGCTAGAGCAGAACCCCCTAGTGCTAGCTTTCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGAAGGTCTGCTAGAGCAGAACCCCCTAGTGCTAGCTTTCACAA  150

seq1  GGCTCAAAGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTCACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTCACCTGT  200

seq1  CATTAGCTGACCCTAGGCAGGGCTCTCTTATTTTACTGTAAATATTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTGACCCTAGGCAGGGCTCTCTTATTTTACTGTAAATATTACCT  250

seq1  GGTTCCTGTAAGTCTTCTTGAAGTCATTCCTCTGTTTTGTGTCAGATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGTAAGTCTTCTTGAAGTCATTCCTCTGTTTTGTGTCAGATAAC  300

seq1  TGCAATGTACTTTGTCTACTGTGACACCCTACCCCTTTGTTTTCTGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTACTTTGTCTACTGTGACACCCTACCCCTTTGTTTTCTGTATT  350

seq1  ATATAAGATTGGTGTTCACTTTGTGACAATACATTCAGATTCTACACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATTGGTGTTCACTTTGTGACAATACATTCAGATTCTACACAAT  400

seq1  CTCTTGTGTCACTTCTGTTTGTCATTCACCGACTCCTTGTCCATCTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGTCACTTCTGTTTGTCATTCACCGACTCCTTGTCCATCTACAA  450

seq1  CCAGAGACTTGTTCTACACAGACAGGGACCAAAGAGGGTCTACGGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTTGTTCTACACAGACAGGGACCAAAGAGGGTCTACGGCAGAA  500

seq1  CTCTGGAGTGAGCTGTCGGAATGGAGATTAGAAACAAGCAGCTTCAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTGAGCTGTCGGAATGGAGATTAGAAACAAGCAGCTTCAGTGA  550

seq1  CAGCGGGTGTTGAGCATTCATTCATCCATCCATTCATTCAAGAGATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGGTGTTGAGCATTCATTCATCCATCCATTCATTCAAGAGATTATT  600

seq1  ATACATGCGGTGCTGGACTCTCTCCTTTGCCTGCTTGCCTTGTGGGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCGGTGCTGGACTCTCTCCTTTGCCTGCTTGCCTTGTGGGACTG  650

seq1  AGCAACTGCTAGACCCCCTGGACTTCCATTCACAGCTGCTGCTGACCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGCTAGACCCCCTGGACTTCCATTCACAGCTGCTGCTGACCATT  700

seq1  GCTGGGAATTGGACTGCAGACTGTAAGTCATCAACAAATTCCTCTACTAT  750
      ||| |||||||||||||||||||||||||||| ||||  | |||||||||
seq2  GCT-GGAATTGGACTGCAGACTGTAAGTCATC-ACAA--TTCTCTACTAT  746

seq1  ATAGAGACCATCCATAAGTTCTGTGTCTCTAGAGAACCCTGATGAGTACA  800
      ||||||| ||||||||||| |||||||||||||||  |||||||||||||
seq2  ATAGAGA-CATCCATAAGTCCTGTGTCTCTAGAGA--CCTGATGAGTACA  793

seq1  GAAGTTGATTAAGCAGAGGAGATTCAGCCTCAA  833
      ||||| ||||| ||   ||||| ||||||||||
seq2  GAAGTGGATTAGGCGAGGGAGAATCAGCCTCAA  826


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