BAC Information

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BAC

Clone NameB6Ng01-188D20
Chromosome10 (Build37)
Map Location 62,443,483 - 62,444,511
singlet/doubletsinglet
Overlap geneRufy2
Upstream geneEG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l
Downstream geneHnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188D20.bB6Ng01-188D20.g
ACCGA012592GA012593
length1,2301,024
definitionB6Ng01-188D20.b B6Ng01-188D20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctttatatccctcacagagcgacactggtcggctctatga
taacccttgccacacttagagcaaagagtgagagtccctccctgtttatc
tggagctctgcaatctttcttaaaatgcccaggctttccgcaattaaaac
atgtcctctgatcatttctgctcatggagcggttctgagattggaggatg
gcggccgctaagcctgcattggtgagaggtcccccaagctctcgacagac
cctgagccagtcttgtaagcctttgttctttcttggggctatggccgctc
ggcactcctttgtggcttgctcatagattagctgttctaccagaggcgcg
gcttgctctgaatctccaaaaatacgctctgctgcctctgtcattctggc
cacaaaatctgagaaggattcctgaggtccctggacaacttttgttaatt
gaccagtggtttcacctgctcgggagagcgccttccaggccctaatagcc
gtggaggaaacttgggcataagctccccaatggtagtttgtttgatcagc
agaataagctccctgacccgttaacaagtcaaaagtccaatctctctgct
ctggagtcaaagcagctgcgtttgctcgggcctgcgcttgtgcagtttca
tgccaaagagctctccattccatatatttgcccatactagggagagcggc
ttttacaaccgtttgccagtcagcaggagttagtgccatgccggcgagcc
tgtctaactgcaccaaggtaaaattagcattggttccgtatttacggacc
gactcggcaagctctttaatttgtaagtattctaccggagcgtggacacg
cccaccctcggctccttcaaagaccggaaatgcctgttgtattttccttt
gttcctctctgggaatgaatgagtctgcgcactgcctctctgcgcactgc
ctctctgcgcactgcctctctgcgcatctcttctgcgcattgcctcctct
gcgcattctcttctgcggcattgcctcctctgcgcatgctgacgccacta
cgcagggcggggaacttccgcatagggcgaccttgaaagcgactgccctt
gaagcccaatcagcaactgggccttcgcagcgctttgggcttcttaactg
aattagcctagcacttcactgacctgataccatttttctcataatgaggc
cgtgcattctccttcctctccccgagcatg
gaattctgccgattattaaacgtcaggtggtttcacttcgggagcggggg
tggacggagggaatcacacctcgacggagagtggaggaaaagatgtggcc
atatccttcatcacccagccgggctgtttcagattgcggaggaagtcagc
ctaagagagctgggatgcaaaccatagccaagtgccagagcaaggggact
cttgttttgttattcgaaacgggttctcactgcatagtcctggctgtcca
ggagctagctatgtagaccaggctggactcgaactcagagattccctcct
gcctctgcctcccaaattctggaattaaagtgtgtcgcaccacgcccagc
tgttttgttttgttttgagtgggccactaaattgtgaacgcactgaccac
ctgggtttgtcatttacttgaaggttgtttttgagacaggtctctctata
tagcattggctgcctcagaacactctgtttagaccaggctggacccaaga
atcacagacgctgggactacagaaacagctacatggcagagttctctgga
gattaataaatgttaggtttggttttcacatctcttttgctatcttcgca
gaaaaatatttgtgccactcggcagtgtttagagtgttgggggaacagct
ggtttaaaaaaaattatttttatttttaatgagtgtgtacctgagtgtag
gggcctccagaggcgtcgggtctccctggagttggagttaagcgcttacc
acaggtatggggaattaacctctttccagcccgtactagaatttttttct
ttcctttttttttttttttttcttttcttttgacctgggagttgtgtttt
tttcgagacagggtcttactgtgtaaccctggcccggcctgaaacaaatc
tcctagttgcttaggtcaaaggcacagagactacctttggtttgtcaaaa
tattttgatttttttttttttttttctgtggtggtgtttccctggatggt
tgtctggagattctgaatctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_62443483_62444511
seq2: B6Ng01-188D20.g_65_1088

seq1  GAATTCTGCCGATTATTAAACGTCAGGTGGTTTCACTTCGGGAGCGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCGATTATTAAACGTCAGGTGGTTTCACTTCGGGAGCGGGGG  50

seq1  TGGACGGAGGGAATCACACCTCGACGGAGAGTGGAGGAAAAGATGTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGAGGGAATCACACCTCGACGGAGAGTGGAGGAAAAGATGTGGCC  100

seq1  ATATCCTTCATCACCCAGCCGGGCTGTTTCAGATTGCGGAGGAAGTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTCATCACCCAGCCGGGCTGTTTCAGATTGCGGAGGAAGTCAGC  150

seq1  CTAAGAGAGCTGGGATGCAAACCATAGCCAAGTGCCAGAGCAAGGGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAGCTGGGATGCAAACCATAGCCAAGTGCCAGAGCAAGGGGACT  200

seq1  CTTGTTTTGTTATTCGAAACGGGTTCTCACTGCATAGTCCTGGCTGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTGTTATTCGAAACGGGTTCTCACTGCATAGTCCTGGCTGTCCA  250

seq1  GGAGCTAGCTATGTAGACCAGGCTGGACTCGAACTCAGAGATTCCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGCTATGTAGACCAGGCTGGACTCGAACTCAGAGATTCCCTCCT  300

seq1  GCCTCTGCCTCCCAAATTCTGGAATTAAAGTGTGTCGCACCACGCCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAATTCTGGAATTAAAGTGTGTCGCACCACGCCCAGC  350

seq1  TGTTTTGTTTTGTTTTGAGTGGGCCACTAAATTGTGAACGCACTGACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGAGTGGGCCACTAAATTGTGAACGCACTGACCAC  400

seq1  CTGGGTTTGTCATTTACTTGAAGGTTGTTTTTGAGACAGGTCTCTCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGTCATTTACTTGAAGGTTGTTTTTGAGACAGGTCTCTCTATA  450

seq1  TAGCATTGGCTGCCTCAGAACACTCTGTTTAGACCAGGCTGGACCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTGGCTGCCTCAGAACACTCTGTTTAGACCAGGCTGGACCCAAGA  500

seq1  ATCACAGACGCTGGGACTACAGAAACAGCTACATGGCAGAGTTCTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGACGCTGGGACTACAGAAACAGCTACATGGCAGAGTTCTCTGGA  550

seq1  GATTAATAAATGTTAGGTTTGGTTTTCACATCTCTTTTGCTATCTTCGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATAAATGTTAGGTTTGGTTTTCACATCTCTTTTGCTATCTTCGCA  600

seq1  GAAAAATATTTGTGCCACTCGGCAGTGTTTAGAGTGTTGGGGGAACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATTTGTGCCACTCGGCAGTGTTTAGAGTGTTGGGGGAACAGCT  650

seq1  GGTTTAAAAAAAATTATTTTTATTTTTAATGAGTGTGTACCTGAGTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAAAAAATTATTTTTATTTTTAATGAGTGTGTACCTGAGTGTAG  700

seq1  GGGCCTCCAGAGGCGTCGGGTCTCCCTGGAGTTGGAGTTAAGCGCTTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCAGAGGCGTCGGGTCTCCCTGGAGTTGGAGTTAAGCGCTTACC  750

seq1  ACAGGTATGGGGAATTAACCTCTTTCCAGCCCGTACTAGAATTTTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTATGGGGAATTAACCTCTTTCCAGCCCGTACTAGAATTTTTTTCT  800

seq1  TTCCTTTTTTTTTTTTTTTTTCTTTTCTTTTGACCTGGGAGTTGTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTTTTTTTTTTTTCTTTTCTTTTGACCTGGGAGTTGTGTTTT  850

seq1  TTTCGAGACAGGGTCTTACTGTGTAACCCTGG-CCGGCCTGGAACCAATC  899
      |||||||||||||||||||||||||||||||| |||||||| ||| ||||
seq2  TTTCGAGACAGGGTCTTACTGTGTAACCCTGGCCCGGCCTGAAACAAATC  900

seq1  TCCTAGTTGCTTAGGTCAAAGGCACAGAAGACTACCTTGGGTTTGTCAAA  949
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TCCTAGTTGCTTAGGTCAAAGGCACAG-AGACTACCTTTGGTTTGTCAAA  949

seq1  ATATTTTGA-TTTTTTTTTTTTTTTTCTGTTGTTGTTGTTTTCCCTGTGA  998
      ||||||||| |||||||||||||||||||| || ||   |||||||| ||
seq2  ATATTTTGATTTTTTTTTTTTTTTTTCTGTGGTGGT--GTTTCCCTG-GA  996

seq1  TGTTTGTTCTGGGAGATTCTGGAATCTGATA  1029
      || ||| ||| ||||||||| ||||||||||
seq2  TGGTTG-TCT-GGAGATTCT-GAATCTGATA  1024