BAC Information

Click to search

BAC

Clone NameB6Ng01-188O12
Chromosome10 (Build37)
Map Location 104,394,992 - 104,601,493
singlet/doubletdoublet
Overlap geneLOC100042383
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188O12.bB6Ng01-188O12.g
ACCGA013073GA013074
length1,132326
definitionB6Ng01-188O12.b B6Ng01-188O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,600,373 - 104,601,493)(104,394,992 - 104,395,317)
sequence
gaattctttgcaaagcttaacctttttttccttgccacatcaccacccgt
agttgaagatctaatgcatttttacatcttaggtaaactatcattggtaa
ttcccatcctgttatttcatgaggaattgtgagcttcttctgtttttcta
atttttattttatggcttttttaaacaaagtactcaaatatttgtataag
acagtgatatgactataactattcatctacacactgtgtgatcaacctac
actttttctccatagtctgaaaatagtcatttcccaattagatggggact
ccttacaagaaaaccaacagacagaggttggacctaggccccctgcatat
ttggagcagatgtgcagcatggtcttcatgtggatccccaatatgtgagg
cttaccctgactctgttacctgcctgtggattctgttcccctaactgggc
tgccttatctttgggagacaatgtatgtagtcctgaaaggatttcacgtg
tcagggcaggatgatacccacggatagcatccccttctcagagatgaaag
gggagggagtaggagaggagctgtatgaggtgaggtactgtgaacaggat
gtatagtgaataaatgaataaataaatggaaaaaatgaagttccccaatt
atggctctcatgtcattctgatctgttctctgatggccagtgttgaaatt
tctgacccgaaaaagtcttacattagattcaaggtctgatttgttcagtt
gtggtttgactcttttatgttcagtctatgttcaccctataccaactatg
acagcaggtcacaagattttgaatttgtcacccacatgcaattacatgca
ctacaaggcttttgctgtgttatgctaatagatttcttgtagatctggtg
taacgtggattctactttttattgactacagaaagtctttgcatcctccc
tttagcattcattaggccttatttggagccttgagagcagagctaaagga
tggagccacaatcctacgcaaaatttttcacagatgcttctttgggcatc
tatgaaccagccaaatttcttagtattagaacatttgggatggagcttta
aaccgtttcttacccttagatgtcaagtcaaa
cttttgttataaaatatgtaaagaaaacataagctgataaaattatggta
aaataatattgaatatcatgttaactctctataaaatatagttctgaaga
aaattttgattattttagtagtgttgtattttataaaaagaagagaggga
aggaatgtgtttggtgggtgttatagtcaggtgtggggcaaggggatgcc
tgtgtaggcccatgctgaagcatccatttgccctgaaagaccagccacag
gaaggtatagtatagaatagagttgattagggacatgaagaggggagttg
attggggtattagaggcagaaaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104600373_104601493
seq2: B6Ng01-188O12.b_46_1177 (reverse)

seq1  TTTGACTTTGACATCTAAGGGT-AGAAAC-GTTTTAAGCTCAATCCAAAT  48
      |||||| ||||||||||||||| |||||| |||| |||||| |||| || 
seq2  TTTGAC-TTGACATCTAAGGGTAAGAAACGGTTTAAAGCTCCATCCCAAA  49

seq1  TGTTTCTTATACTAAG-AATTTGCTTGGTTCATAGATGCCCAAAGAAGCA  97
      || |||| |||||||| ||||||  |||||||||||||||||||||||||
seq2  TG-TTCTAATACTAAGAAATTTGGCTGGTTCATAGATGCCCAAAGAAGCA  98

seq1  TCTGTGAAAATTTTTGCGTAGGA-TGT-GCTCCATCCTTTAGCTCTGCTC  145
      |||||||||| |||||||||||| ||| ||||||||||||||||||||||
seq2  TCTGTGAAAAATTTTGCGTAGGATTGTGGCTCCATCCTTTAGCTCTGCTC  148

seq1  TCAA-GCTCCAA--TAGGCCT-ATGAATGCT-AAGGGAGGATGCAAAGAC  190
      |||| |||||||   |||||| ||||||||| ||||||||||||||||||
seq2  TCAAGGCTCCAAATAAGGCCTAATGAATGCTAAAGGGAGGATGCAAAGAC  198

seq1  TTTCTGTAGTCAATAAAAGTAAGAAT-CACGTTACA-CAGATCTACAAG-  237
      ||||||||||||||||||   ||||| ||||||||| |||||||||||| 
seq2  TTTCTGTAGTCAATAAAAAGTAGAATCCACGTTACACCAGATCTACAAGA  248

seq1  AATCTATTAGCATAACACAGC-AAAGCCTTGTAGTGCATGTAATTGCATG  286
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATCTATTAGCATAACACAGCAAAAGCCTTGTAGTGCATGTAATTGCATG  298

seq1  TTGGGTGACAAATTCAAAATCTTGTGACCTGCTGTCATAGTTGGTATAGG  336
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGGGTGACAAATTCAAAATCTTGTGACCTGCTGTCATAGTTGGTATAGG  347

seq1  GTGAACATAGACTGAACATAAAAGAGTCAAACCACAACTGAACAAATCAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATAGACTGAACATAAAAGAGTCAAACCACAACTGAACAAATCAG  397

seq1  ACCTTGAATCTAATGTAAGACTTTTTCGGGTCAGAAATTTCAACACTGGC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAATCTAATGTAAGACTTTTTCGGGTCAGAAATTTCAACACTGGC  447

seq1  CATCAGAGAACAGATCAGAATGACATGAGAGCCATAATTGGGGAACTTCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGAACAGATCAGAATGACATGAGAGCCATAATTGGGGAACTTCA  497

seq1  TTTTTTCCATTTATTTATTCATTTATTCACTATACATCCTGTTCACAGTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCATTTATTTATTCATTTATTCACTATACATCCTGTTCACAGTA  547

seq1  CCTCACCTCATACAGCTCCTCTCCTACTCCCTCCCCTTTCATCTCTGAGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTCATACAGCTCCTCTCCTACTCCCTCCCCTTTCATCTCTGAGA  597

seq1  AGGGGATGCTATCCGTGGGTATCATCCTGCCCTGACACGTGAAATCCTTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGCTATCCGTGGGTATCATCCTGCCCTGACACGTGAAATCCTTT  647

seq1  CAGGACTACATACATTGTCTCCCAAAGATAAGGCAGCCCAGTTAGGGGAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTACATACATTGTCTCCCAAAGATAAGGCAGCCCAGTTAGGGGAA  697

seq1  CAGAATCCACAGGCAGGTAACAGAGTCAGGGTAAGCCTCACATATTGGGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCACAGGCAGGTAACAGAGTCAGGGTAAGCCTCACATATTGGGG  747

seq1  ATCCACATGAAGACCATGCTGCACATCTGCTCCAAATATGCAGGGGGCCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATGAAGACCATGCTGCACATCTGCTCCAAATATGCAGGGGGCCT  797

seq1  AGGTCCAACCTCTGTCTGTTGGTTTTCTTGTAAGGAGTCCCCATCTAATT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAACCTCTGTCTGTTGGTTTTCTTGTAAGGAGTCCCCATCTAATT  847

seq1  GGGAAATGACTATTTTCAGACTATGGAGAAAAAGTGTAGGTTGATCACAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGACTATTTTCAGACTATGGAGAAAAAGTGTAGGTTGATCACAC  897

seq1  AGTGTGTAGATGAATAGTTATAGTCATATCACTGTCTTATACAAATATTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTAGATGAATAGTTATAGTCATATCACTGTCTTATACAAATATTT  947

seq1  GAGTACTTTGTTTAAAAAAGCCATAAAATAAAAATTAGAAAAACAGAAGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTTGTTTAAAAAAGCCATAAAATAAAAATTAGAAAAACAGAAGA  997

seq1  AGCTCACAATTCCTCATGAAATAACAGGATGGGAATTACCAATGATAGTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAATTCCTCATGAAATAACAGGATGGGAATTACCAATGATAGTT  1047

seq1  TACCTAAGATGTAAAAATGCATTAGATCTTCAACTACGGGTGGTGATGTG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAGATGTAAAAATGCATTAGATCTTCAACTACGGGTGGTGATGTG  1097

seq1  GCAAGGAAAAAAAGGTTAAGCTTTGCAAAGAATTC  1121
      |||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAAAAAAGGTTAAGCTTTGCAAAGAATTC  1132

seq1: chr10_104394992_104395317
seq2: B6Ng01-188O12.g_75_400

seq1  CTTTTGTTATAAAATATGTAAAGAAAACATAAGCTGATAAAATTATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTATAAAATATGTAAAGAAAACATAAGCTGATAAAATTATGGTA  50

seq1  AAATAATATTGAATATCATGTTAACTCTCTATAAAATATAGTTCTGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATTGAATATCATGTTAACTCTCTATAAAATATAGTTCTGAAGA  100

seq1  AAATTTTGATTATTTTAGTAGTGTTGTATTTTATAAAAAGAAGAGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGATTATTTTAGTAGTGTTGTATTTTATAAAAAGAAGAGAGGGA  150

seq1  AGGAATGTGTTTGGTGGGTGTTATAGTCAGGTGTGGGGCAAGGGGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTGTTTGGTGGGTGTTATAGTCAGGTGTGGGGCAAGGGGATGCC  200

seq1  TGTGTAGGCCCATGCTGAAGCATCCATTTGCCCTGAAAGACCAGCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGCCCATGCTGAAGCATCCATTTGCCCTGAAAGACCAGCCACAG  250

seq1  GAAGGTATAGTATAGAATAGAGTTGATTAGGGACATGAAGAGGGGAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTATAGTATAGAATAGAGTTGATTAGGGACATGAAGAGGGGAGTTG  300

seq1  ATTGGGGTATTAGAGGCAGAAAAAGG  326
      ||||||||||||||||||||||||||
seq2  ATTGGGGTATTAGAGGCAGAAAAAGG  326