BAC Information

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BAC

Clone NameB6Ng01-189A19
Chromosome10 (Build37)
Map Location 109,738,353 - 109,882,501
singlet/doubletdoublet
Overlap geneLOC100042506
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189A19.bB6Ng01-189A19.g
ACCGA013177GA013178
length1,1681,093
definitionB6Ng01-189A19.b B6Ng01-189A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,738,353 - 109,739,511)(109,881,420 - 109,882,501)
sequence
gaattccttttattcttctccagaacaattagacataaaaagacctacag
tgataggccagaaactgaggttactttcctgatcattataatctcaccag
aagtatcttaaaagtctttaacaaaactgtagcgcaattattccatttag
gttagtgattcattgggaagttgtgtaagtacctcaagaactaagcaact
gtctattttataacaaatgtactattgccatttgatagctaaatgtgttt
tgctctggctttctgttgtgaatctgcttcagcgtggatttaagtcatca
caggtgggtttctgaccaaattcaatgacagttctaatttctcacttcac
taactctattacactttcatttaaattgagaaataaagggggcaaacctt
tgcagccactaggcttctctcagtgaggaagggtgcttgcagctcagcgt
cctatgacctgagttgagtctgtgacgctgcaaggtgacacaacaggctg
tgtcatgcacatatccatacatatgcacttagacacataaataaataaat
gtacatttaaaaaatattcacgatgggagtaaaagaattcaaggcaattc
aacgtgcctggcctattctgatctaaagttaaggtctgaaggtggtagaa
attcccatgagttaagtgtagtttctgcaatctaggagagttggaagatg
gagaaacatcaggaagtagggactctagaagaagttatgtcagtaggctc
tagatcaccgggtctcaaccttcctaatcctgtgaccctttaatacagtt
cctcacattctggtgacctccccagccataaaattatttttcattgctac
tttgaaactaactttactattgttatgaattgtagtgtaaacctctgaaa
tggaggatatttgataaactacccctgtgatagggtcagttgacccataa
aaagggtgtgaccctcagttgagaaccactgctcttaggacgaagatgga
actctacttttccctgtccctctatttgtccctccctgatgtcattaagt
gagcagttttcctctgcccagcccatgccatggcctggtctgattttcca
taggtcccagagcaaggaaccaacccaaccaccggccttgaagcccctgg
cactctgtcaggtcaaaa

gaattcaaacttgcttcttcttctttcctcttttcctctcccctccccgt
ccttctcctgccctcccttcccctcccttctctttcccttccctcccatc
ttgtgctttctctagcctcttctctgtggatatttgttctttaaataagc
atgacctggaaagtatcagaagacctaataaccagtcctttaggaaccag
ttttcagtacatcacaaattagttgcatcgcaagcccacggacaaagtta
atgaagtaaatagtgctggatatttttacacttgagcacactatgcagta
agacctgcctttagaattgatggacacaggtccaatatttatattcttga
tgcaatacataaaaattgagctactctttgttgccagagaaattgattta
tggcagacgtatctagagtttgggtgtcttagcggcttactgataggcat
gctttcatttatttattgttgaataatgtgtcccaccttgtgtgcttatt
ttatgtgcttggcacatctgacgttgaattaatctatcccatgaagtaaa
catgatgtttcaacaaaaacaaagttggtagatgtatattgactgccatt
gacactgtcaggagcatacaggaatatagaaaggaacaaaacaaggtcct
tccttgcccttgaagttggattgttttttaatttttaatgtaaaaagttt
ttatatttattttctgaagtgtttagttgctttatttatagtgagacatt
acaatttattatggccaggctgtgctcaacaacaggccttgggtaggatt
atgttaccataatttgagagtccctttcgagtttctgccccgttaatgca
tgcttatgttcctgttgaaggtctcttatacatggcctcactaaccacaa
aggctttccgcctccagcagaataactctcaatgtcacaggatacatgca
ttagaaactatgccattacttacagtttttttttttcttttttctctttt
tgccagtaaatatgtcagtcatactttccaatagagcatgattctatttg
ttatctagtgatttacctttttggacttagaaagcaattcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109738353_109739511
seq2: B6Ng01-189A19.b_43_1210

seq1  GAATTCCTTTTATTCTTCTCCAGAACAATTAGACATAAAAAGACCTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTATTCTTCTCCAGAACAATTAGACATAAAAAGACCTACAG  50

seq1  TGATAGGCCAGAAACTGAGGTTACTTTCCTGATCATTATAATCTCACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCCAGAAACTGAGGTTACTTTCCTGATCATTATAATCTCACCAG  100

seq1  AAGTATCTTAAAAGTCTTTAACAAAACTGTAGCGCAATTATTCCATTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTTAAAAGTCTTTAACAAAACTGTAGCGCAATTATTCCATTTAG  150

seq1  GTTAGTGATTCATTGGGAAGTTGTGTAAGTACCTCAAGAACTAAGCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGATTCATTGGGAAGTTGTGTAAGTACCTCAAGAACTAAGCAACT  200

seq1  GTCTATTTTATAACAAATGTACTATTGCCATTTGATAGCTAAATGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTTATAACAAATGTACTATTGCCATTTGATAGCTAAATGTGTTT  250

seq1  TGCTCTGGCTTTCTGTTGTGAATCTGCTTCAGCGTGGATTTAAGTCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGCTTTCTGTTGTGAATCTGCTTCAGCGTGGATTTAAGTCATCA  300

seq1  CAGGTGGGTTTCTGACCAAATTCAATGACAGTTCTAATTTCTCACTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGTTTCTGACCAAATTCAATGACAGTTCTAATTTCTCACTTCAC  350

seq1  TAACTCTATTACACTTTCATTTAAATTGAGAAATAAAGGGGGCAAACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTATTACACTTTCATTTAAATTGAGAAATAAAGGGGGCAAACCTT  400

seq1  TGCAGCCACTAGGCTTCTCTCAGTGAGGAAGGGTGCTTGCAGCTCAGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCACTAGGCTTCTCTCAGTGAGGAAGGGTGCTTGCAGCTCAGCGT  450

seq1  CCTATGACCTGAGTTGAGTCTGTGACGCTGCAAGGTGACACAACAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGACCTGAGTTGAGTCTGTGACGCTGCAAGGTGACACAACAGGCTG  500

seq1  TGTCATGCACATATCCATACATATGCACTTAGACACATAAATAAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGCACATATCCATACATATGCACTTAGACACATAAATAAATAAAT  550

seq1  GTACATTTAAAAAATATTCACGATGGGAGTAAAAGAATTCAAGGCAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTAAAAAATATTCACGATGGGAGTAAAAGAATTCAAGGCAATTC  600

seq1  AACGTGCCTGGCCTATTCTGATCTAAAGTTAAGGTCTGAAGGTGGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCCTGGCCTATTCTGATCTAAAGTTAAGGTCTGAAGGTGGTAGAA  650

seq1  ATTCCCATGAGTTAAGTGTAGTTTCTGCAATCTAGGAGAGTTGGAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATGAGTTAAGTGTAGTTTCTGCAATCTAGGAGAGTTGGAAGATG  700

seq1  GAGAAACATCAGGAAGTAGGGACTCTAGAAGAAGTTATGTCAGTAGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACATCAGGAAGTAGGGACTCTAGAAGAAGTTATGTCAGTAGGCTC  750

seq1  TAGATCACCGGGTCTCAACCTTCCTAATCCTGTGACCCTTTAATACAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCACCGGGTCTCAACCTTCCTAATCCTGTGACCCTTTAATACAGTT  800

seq1  CCTCACATTCTGGTGACCTCCCCAGCCATAAAATTA-TTTTCATTGCTAC  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTCACATTCTGGTGACCTCCCCAGCCATAAAATTATTTTTCATTGCTAC  850

seq1  TTTGAAACTAACTTTACTATTGTTATGAATTGTAGTGTAAACCTCTGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACTAACTTTACTATTGTTATGAATTGTAGTGTAAACCTCTGAAA  900

seq1  TGGAGGATATTTGATAAACTACCCCTGTGATAGGGTCAGTTGACCCATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATATTTGATAAACTACCCCTGTGATAGGGTCAGTTGACCCATAA  950

seq1  AAAGGGTGTGACCCTCAGGTTGAGAACCACTGCTCTAGGGACGAAGATGG  999
      ||||||||||||||||| ||||||||||||||||||  ||||||||||||
seq2  AAAGGGTGTGACCCTCA-GTTGAGAACCACTGCTCTTAGGACGAAGATGG  999

seq1  AACTCTACTTTTCCCTGTCCCTCTATTTGTCCCT-CCTGATGTCATTAAG  1048
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACTCTACTTTTCCCTGTCCCTCTATTTGTCCCTCCCTGATGTCATTAAG  1049

seq1  TGAGCAG-TTTCCTCTGCCACAGCCCATGCCATG--CTGTTCTGATTTTC  1095
      ||||||| ||||||||||| ||||||||||||||  ||| ||||||||||
seq2  TGAGCAGTTTTCCTCTGCC-CAGCCCATGCCATGGCCTGGTCTGATTTTC  1098

seq1  CATA-GTCCCAGAAGCAAGGAAACCAACCAACCA-CGGC--TGAAGCCCC  1141
      |||| ||||||| ||||||||| | | ||||||| ||||  |||||||||
seq2  CATAGGTCCCAG-AGCAAGGAACCAACCCAACCACCGGCCTTGAAGCCCC  1147

seq1  TGCAA--CTGTCA-GTCAAAA  1159
      ||  |  |||||| |||||||
seq2  TGGCACTCTGTCAGGTCAAAA  1168


seq1: chr10_109881420_109882501
seq2: B6Ng01-189A19.g_68_1160 (reverse)

seq1  TATGAAATGCCTTTCT-ACTCCAAAAAGTTAAATC-CTAGATA--CAATA  46
      |||||| || |||||| | ||||||||| |||||| |||||||   ||||
seq2  TATGAATTG-CTTTCTAAGTCCAAAAAGGTAAATCACTAGATAACAAATA  49

seq1  GATTCATGCTCTATTGG-AAGTAT-ACTGAACATATTTTACTTGGCAAAA  94
      || |||||||||||||| |||||| |||| ||||| |||||| |  ||||
seq2  GAATCATGCTCTATTGGAAAGTATGACTG-ACATA-TTTACTGGCAAAAA  97

seq1  GAGAAAAAAG-AAAAAAAAAACTGTAAGTAATGGCATAGTTTCTAATGCA  143
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAGAAAAAAAAAAACTGTAAGTAATGGCATAGTTTCTAATGCA  147

seq1  TGT-TCCTGTGACATTGAGAGTTTATCTGCTGGAGGCGGAAAGCCTTTGT  192
      ||| |||||||||||||||||||  |||||||||||||||||||||||||
seq2  TGTATCCTGTGACATTGAGAGTTATTCTGCTGGAGGCGGAAAGCCTTTGT  197

seq1  GGTTAGTGAGGCCATGTATAAGAGACCTTC-ACAGGAACATTAGCATGCA  241
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  GGTTAGTGAGGCCATGTATAAGAGACCTTCAACAGGAACATAAGCATGCA  247

seq1  TTAACGGGGCAG-AACTCGAAA-GGACTCTC-AATTATGGTAACATAATC  288
      |||||||||||| ||||||||| |||||||| ||||||||||||||||||
seq2  TTAACGGGGCAGAAACTCGAAAGGGACTCTCAAATTATGGTAACATAATC  297

seq1  CTACCC-AGGCCTG-TGTTGAGCACAGCCTGGCCATAATAAATTGTAATG  336
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  CTACCCAAGGCCTGTTGTTGAGCACAGCCTGGCCATAATAAATTGTAATG  347

seq1  TCTCACTATAAATAAAGCAACTAAACACTTCAGAAAATAAATATAAAAAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTATAAATAAAGCAACTAAACACTTCAGAAAATAAATATAAAAAC  397

seq1  TTTTTACATTAAAAATTAAAAAACAATCCAACTTCAAGGGCAAGGAAGGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATTAAAAATTAAAAAACAATCCAACTTCAAGGGCAAGGAAGGA  447

seq1  CCTTGTTTTGTTCCTTTCTATATTCCTGTATGCTCCTGACAGTGTCAATG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTTGTTCCTTTCTATATTCCTGTATGCTCCTGACAGTGTCAATG  497

seq1  GCAGTCAATATACATCTACCAACTTTGTTTTTGTTGAAACATCATGTTTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAATATACATCTACCAACTTTGTTTTTGTTGAAACATCATGTTTA  547

seq1  CTTCATGGGATAGATTAATTCAACGTCAGATGTGCCAAGCACATAAAATA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGGATAGATTAATTCAACGTCAGATGTGCCAAGCACATAAAATA  597

seq1  AGCACACAAGGTGGGACACATTATTCAACAATAAATAAATGAAAGCATGC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAAGGTGGGACACATTATTCAACAATAAATAAATGAAAGCATGC  647

seq1  CTATCAGTAAGCCGCTAAGACACCCAAACTCTAGATACGTCTGCCATAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTAAGCCGCTAAGACACCCAAACTCTAGATACGTCTGCCATAAA  697

seq1  TCAATTTCTCTGGCAACAAAGAGTAGCTCAATTTTTATGTATTGCATCAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTCTGGCAACAAAGAGTAGCTCAATTTTTATGTATTGCATCAA  747

seq1  GAATATAAATATTGGACCTGTGTCCATCAATTCTAAAGGCAGGTCTTACT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAATATTGGACCTGTGTCCATCAATTCTAAAGGCAGGTCTTACT  797

seq1  GCATAGTGTGCTCAAGTGTAAAAATATCCAGCACTATTTACTTCATTAAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGTGCTCAAGTGTAAAAATATCCAGCACTATTTACTTCATTAAC  847

seq1  TTTGTCCGTGGGCTTGCGATGCAACTAATTTGTGATGTACTGAAAACTGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCGTGGGCTTGCGATGCAACTAATTTGTGATGTACTGAAAACTGG  897

seq1  TTCCTAAAGGACTGGTTATTAGGTCTTCTGATACTTTCCAGGTCATGCTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAAGGACTGGTTATTAGGTCTTCTGATACTTTCCAGGTCATGCTT  947

seq1  ATTTAAAGAACAAATATCCACAGAGAAGAGGCTAGAGAAAGCACAAGATG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGAACAAATATCCACAGAGAAGAGGCTAGAGAAAGCACAAGATG  997

seq1  GGAGGGAAGGGAAAGAGAAGGGAGGGGAAGGGAGGGCAGGAGAAGGACGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAGGGAAAGAGAAGGGAGGGGAAGGGAGGGCAGGAGAAGGACGG  1047

seq1  GGAGGGGAGAGGAAAAGAGGAAAGAAGAAGAAGCAAGTTTGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAGAGGAAAAGAGGAAAGAAGAAGAAGCAAGTTTGAATTC  1093


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