BAC Information

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BAC

Clone NameB6Ng01-189M21
Chromosome10 (Build37)
Map Location 31,862,682 - 32,041,368
singlet/doubletdoublet
Overlap geneTcba1
Upstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189M21.bB6Ng01-189M21.g
ACCGA013728GA013729
length5501,118
definitionB6Ng01-189M21.b B6Ng01-189M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,862,682 - 31,863,235)(32,040,238 - 32,041,368)
sequence
tttttgttggagagtgaagtggagggtttggaggggcagtcaaggactgt
aaacactaaatcagggattacaacagttaagtagctcagtgttcagacct
ggattagacctagctgtgcagtctttaggccagcagcaggaatctgaatt
tcagcaagatcataagtttaatttaattttgagatatattgtactaagca
aggggatcttcaaggaaaaacaagaagttttgcttctcattgtgatcctt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagatttatagtcccaccttc
aattaatccaaaatgatatataaaaaatttagataacatttttcaacctc
aataatttaagatgttaattaagatagaaagaggaagagaagacaaagct
ctaagaaatttcttatggtattaagtgtagtaatttgattttctttttct
tctaaaatatttgatacagaagcattaaaaataatttattatttgcttag
caaacccaaatttgccactatacacacttgttgcatgattcctttctacc

gaattctttttatataatttacaggttcacataataagagaggttttttt
ttctataaattatgaaaataggcaattgtgctacaacaaacattggtaag
aaataatgaaacataaatattagttattttgtagaaataaaaaaatgggt
tgcattttatatagtgcatttcagttaactcatctaagtaaaaatttttc
tatgtggttatgaactacatacaatcatgaaccaattcagtgtctataat
cagtaattacttgattataataatatgttatgtgagactaaagctctttg
atctttggtgatctttggataaatagataatggtataaaaatacagcaat
atttctaaaatttatatgagtatgttataaaatgcatctttaaaggactc
aagttttatttatataaaatagactgttttccaaattttctgttaatttg
acatataataggaatatatgttgccatagcaataacaaacccattctaca
ataactaccactaaattatttatattagtagctaacatgatagtgcttaa
gtgaaatatcatcaagttgcatataatggggttttctttgagttatagtt
gaaagagatatcttttttggaaactgagaggaaaaagacatttttttttc
ttttttcaatttttttattaggtattttcttcatttacatttcaaatggt
atcctgaaagtcccctataccctctccccaccctgctcccctacccatcc
actcccacttcttggccctggtgtttccctgtactgaggcatataaagtt
tgcaagaccaaagggcctctcttcacaatgaggactgactaggccatctt
ctgctacatatgtagttggatacagcgatatcagggtcctttcagcaaaa
tcttgttggtgtgtgcaatagtgtctgcattggtggctgattatgggatg
gatccccaggtggggtagtctctggaatggtcctttctctgtctcagctc
aactttgtcttctatactcctttcatggtatttgtccaatctaggaaggg
gcaagtaatccacactttgatcttcttcttctgagttcatgtgttttgcg
aatgatccttggtactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31862682_31863235
seq2: B6Ng01-189M21.b_47_602

seq1  GAATTCTTTTTGTTGGAGAGTGAAGTGGAGGGTTTGGAGGGGCAGTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTTGGAGAGTGAAGTGGAGGGTTTGGAGGGGCAGTCAAG  50

seq1  GACTGTAAACACTAAATCAGGGATTACAACAGTTAAGTAGCTCAGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAAACACTAAATCAGGGATTACAACAGTTAAGTAGCTCAGTGTTC  100

seq1  AGACCTGGATTAGACCTAGCTGTGCAGTCTTTAGGCCAGCAGCAGGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGATTAGACCTAGCTGTGCAGTCTTTAGGCCAGCAGCAGGAATC  150

seq1  TGAATTTCAGCAAGATCATAAGTTTAATTTAATTTTGAGATATATTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCAGCAAGATCATAAGTTTAATTTAATTTTGAGATATATTGTAC  200

seq1  TAAGCAAGGGGATCTTCAAGGAAAAACAAGAAGTTTTGCTTCTCATTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGGGGATCTTCAAGGAAAAACAAGAAGTTTTGCTTCTCATTGTG  250

seq1  ATCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGATTTATAGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGATTTATAGTCCC  300

seq1  ACCTTCAATTAATCCAAAATGATATATAAAAAATTTAGATAACATTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAATTAATCCAAAATGATATATAAAAAATTTAGATAACATTTTTC  350

seq1  AACCTCAATAATTTAAGATGTTAATTAAGATAGAAAGAGGAAGAGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAATAATTTAAGATGTTAATTAAGATAGAAAGAGGAAGAGAAGAC  400

seq1  AAAGCTCTAAGAAATTTCTTATGGTATTAAGTGTAGTAATTTGATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTAAGAAATTTCTTATGGTATTAAGTGTAGTAATTTGATTTTCT  450

seq1  TTTTCTTCTAAAATA-TTGATACAGAAGCATTAAAAATAATTTATTATTT  499
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTAAAATATTTGATACAGAAGCATTAAAAATAATTTATTATTT  500

seq1  GCTTAGCAAACCCAAATTTGCCACTATACACACTTGTTGCATGA-TCCTT  548
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTTAGCAAACCCAAATTTGCCACTATACACACTTGTTGCATGATTCCTT  550

seq1  TCTACC  554
      ||||||
seq2  TCTACC  556

seq1: chr10_32040238_32041368
seq2: B6Ng01-189M21.g_66_1183 (reverse)

seq1  AGAGTACCCAAGATACAATTCGCAAAACACATGAAACTCAAGAAGAAGGA  50
      |||||||| | |||   |||||||||||||||| ||||| ||||||| ||
seq2  AGAGTACCAAGGAT--CATTCGCAAAACACATG-AACTC-AGAAGAA-GA  45

seq1  AGACCAAAGTGTGAATACTTTGCCCCTTCTTAGAATTGGGAACAAAATAC  100
      ||| ||||||||| ||   |||||||||| ||| |||||  || ||||| 
seq2  AGATCAAAGTGTGGATTACTTGCCCCTTCCTAG-ATTGG--AC-AAATA-  90

seq1  CCATGGAAAGGAGTTATAG-AGACAAAGTTTGGAGCTGAGACAGAAGGAA  149
      |||| |||||||| ||||| ||||||||||  |||||||||||| || ||
seq2  CCAT-GAAAGGAG-TATAGAAGACAAAGTT--GAGCTGAGACAG-AGAAA  135

seq1  GGACCA-TCCAGAGACTACCCCACCTGGGGATCCATCCCATAATCAGCCA  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATTCCAGAGACTACCCCACCTGGGGATCCATCCCATAATCAGCCA  185

seq1  CCAAATGCAGACACTATTGCACACACCAACAAGATTTTGCTGAAAGGACC  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-AATGCAGACACTATTGCACACACCAACAAGATTTTGCTGAAAGGACC  234

seq1  CTGATATCGCTGTATCCAACTACATATGTAGCAGAAGATGGCCTAGTCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATCGCTGTATCCAACTACATATGTAGCAGAAGATGGCCTAGTCAG  284

seq1  TCCTCATTGTGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCTCA  348
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTCATTGTGAAGAGAGGCCCTTTGGTCTTGCAAACTTTATATGCCTCA  334

seq1  GTACAGGGAAACACCAGGGCCAAGAAGTGGGAGTGGATGGGTAGGGGAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGAAACACCAGGGCCAAGAAGTGGGAGTGGATGGGTAGGGGAGC  384

seq1  AGGGTGGGGAGAGGGTATAGGGGACTTTCAGGATACCATTTGAAATGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGAGAGGGTATAGGGGACTTTCAGGATACCATTTGAAATGTAA  434

seq1  ATGAAGAAAATACCTAATAAAAAAATTGAAAAAAGAAAAAAAAATGTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAATACCTAATAAAAAAATTGAAAAAAGAAAAAAAAATGTCTT  484

seq1  TTTCCTCTCAGTTTCCAAAAAAGATATCTCTTTCAACTATAACTCAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCAGTTTCCAAAAAAGATATCTCTTTCAACTATAACTCAAAGA  534

seq1  AAACCCCATTATATGCAACTTGATGATATTTCACTTAAGCACTATCATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCATTATATGCAACTTGATGATATTTCACTTAAGCACTATCATGT  584

seq1  TAGCTACTAATATAAATAATTTAGTGGTAGTTATTGTAGAATGGGTTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTAATATAAATAATTTAGTGGTAGTTATTGTAGAATGGGTTTGT  634

seq1  TATTGCTATGGCAACATATATTCCTATTATATGTCAAATTAACAGAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTATGGCAACATATATTCCTATTATATGTCAAATTAACAGAAAAT  684

seq1  TTGGAAAACAGTCTATTTTATATAAATAAAACTTGAGTCCTTTAAAGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAACAGTCTATTTTATATAAATAAAACTTGAGTCCTTTAAAGATG  734

seq1  CATTTTATAACATACTCATATAAATTTTAGAAATATTGCTGTATTTTTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATAACATACTCATATAAATTTTAGAAATATTGCTGTATTTTTAT  784

seq1  ACCATTATCTATTTATCCAAAGATCACCAAAGATCAAAGAGCTTTAGTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATCTATTTATCCAAAGATCACCAAAGATCAAAGAGCTTTAGTCT  834

seq1  CACATAACATATTATTATAATCAAGTAATTACTGATTATAGACACTGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAACATATTATTATAATCAAGTAATTACTGATTATAGACACTGAAT  884

seq1  TGGTTCATGATTGTATGTAGTTCATAACCACATAGAAAAATTTTTACTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATGATTGTATGTAGTTCATAACCACATAGAAAAATTTTTACTTA  934

seq1  GATGAGTTAACTGAAATGCACTATATAAAATGCAACCCATTTTTTTATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTAACTGAAATGCACTATATAAAATGCAACCCATTTTTTTATTT  984

seq1  CTACAAAATAACTAATATTTATGTTTCATTATTTCTTACCAATGTTTGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAATAACTAATATTTATGTTTCATTATTTCTTACCAATGTTTGTT  1034

seq1  GTAGCACAATTGCCTATTTTCATAATTTATAGAAAAAAAAACCTCTCTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACAATTGCCTATTTTCATAATTTATAGAAAAAAAAACCTCTCTTA  1084

seq1  TTATGTGAACCTGT-CATTATATAAAAAGAATTC  1131
      ||||||||||||||  ||||||||||||||||||
seq2  TTATGTGAACCTGTAAATTATATAAAAAGAATTC  1118