BAC Information

Click to search

BAC

Clone NameB6Ng01-190G19
Chromosome10 (Build37)
Map Location 110,000,249 - 110,113,010
singlet/doubletdoublet
Overlap gene9230102K24Rik, LOC100042518
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855
Downstream geneE2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190G19.bB6Ng01-190G19.g
ACCGA014182GA014183
length1,0831,046
definitionB6Ng01-190G19.b B6Ng01-190G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,111,929 - 110,113,010)(110,000,249 - 110,001,294)
sequence
gaattctttggaaggtggaaaaaaaaaacagaaaatgttatgatatctat
tgttgcataaaaggtcagtgtgatatgagccaacaaatatttaatgatgt
tataaatagtatacggtgggtcaggagttcaaaaagacacacatataaac
ctacacatcacatctgtgagtgcacgcgcacacacacacacacacacaca
cttacttattggagtggattggatatcataactatggaagttgactaggc
aagtctgatatggttgcatggttgtttgtctgcccaacaagaaggctgct
attgggtgcaggcactatgctctgtaagtgggattccttcttcctcaggg
aaggtagagcctttgttttaggaggcatttgacataaaggtgcataattc
ctaattgacaagtgaagctcattagcagaaaaatgcaagtcattagaaat
tgcaggtggccaagcagataagcagcctgagaggcaggctaatgcacatg
cgactgacctcatgacatgatcatgataccatgtgtggtgacagttcaca
gtggtttagggtcagattttggaggaaaactgacaagagcaagtggtggt
ggggagacatattattttatagaaactatgtatctgagtagtttgatgaa
gtaggtactgatgttagctggggaaagtgagtgacttgtagggtatgaga
gtatagatgtcggccagaaattctggttgctgcaccatacactgcaggta
gaggcaagaggctagagagtgtgtaccaaatataacacgtaggctgctat
gccctttgctattgctgggctacaagctgaaggtgacttggatgaaaacc
tttattcttatttttcactatttaagtacactgatctaagctgactatct
aattctcattgtgtgtgaggggatggcggtagtgtatgtatgtctttgtg
tgggagtgtgtacacctgtgtgtggagatcagaggctgacatcactgtct
ccctgctctcacagttttaagatttatttttagtgtgggtgcctatgcca
caggttgggtgggggggaaatgttggtgtgtgt
gaattcacactctgacataggcacaggcctagccctagagtttggtttgt
taggagtccgcagtacaatggtgagacctctcaaagcagtcttggcagag
ttagctcctgcacagtcataatgagcaatgactgagattcaagggttttt
ctacatattgattcaaccattatttttcccacgtgcatttgttagaaggc
aaagttggagaattgcatcaaatctttaaaaatcagatcgtgtgcccact
atattaattacatggtccagccttactttgtccttctaagaaattgctaa
atgacctactgttgccattaaaagtttggtcctgacagtagagagtgaaa
ccaggagactatgttaaaattagaataagctttaaaaggaatcacacatc
tgaccaaggtggtaaaattagctaaaatatctgccaaagaaaaatgggaa
gttctaaggcaccagatgtctctgtgggctccagatttggagttctctct
tgcctttgaaagcttctttcagaagtattgagccttataatgcatgtggc
ttagcatatgggctgttattttgcacttctctactctgagtctgccttct
caatcaggatctcagcaacttttctaagctcagtgattatctgggggtat
gaggttttcaagagaattaagcaaaagttgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtcaatgagatgtagtatttctatcttcatttacatttcct
tataaagactcagcacaaaacgattcagagtacattcttcctttttaaga
aagtcttttatgctaccattggtaagcttgatcttcttgtgcaatttcct
aacaatgggaagaggactctttttgccaggttttgggaccctttttcttc
attctgggttgcctcctccatccttaatagaaggggaggtgactagtgtt
gctgcaacttgatatgccatatttggttgctatccatgggaggcctgccc
ttttctgaaagaatggaggagagtttattggagggggaggtgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_110111929_110113010
seq2: B6Ng01-190G19.b_43_1125 (reverse)

seq1  ACACACACAAACAT---CCCCCCACACA--CTGT-GCATATGCACACACA  44
      |||||||| |||||   |||||||| ||  |||| ||||| |||| ||||
seq2  ACACACACCAACATTTCCCCCCCACCCAACCTGTGGCATAGGCACCCACA  50

seq1  CATAAAAATAAATCTTTAAAAACTGTGAAGAGCAGGGAAGACAGTGATGT  94
      | ||||||||||||||  ||||||||| ||||||||| ||||||||||||
seq2  C-TAAAAATAAATCTT--AAAACTGTG-AGAGCAGGG-AGACAGTGATGT  95

seq1  CAGCCTCTGATCTCCACACACAGGTGTACACACTCCCACACAAAGACATA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTGATCTCCACACACAGGTGTACACACTCCCACACAAAGACATA  145

seq1  CATACACTACCGCCATCCCCTCACACACAATGAGAATTAGATAGTCAGCT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTACCGCCATCCCCTCACACACAATGAGAATTAGATAGTCAGCT  195

seq1  TAGATCAGTGTACTTAAATAGTGAAAAATAAGAATAAAGGTTTTCATCCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGTGTACTTAAATAGTGAAAAATAAGAATAAAGGTTTTCATCCA  245

seq1  AGTCACCTTCAGCTTGTAGCCCAGCAATAGCAAAGGGCATAGCAGCCTAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTTCAGCTTGTAGCCCAGCAATAGCAAAGGGCATAGCAGCCTAC  295

seq1  GTGTTATATTTGGTACACACTCTCTAGCCTCTTGCCTCTACCTGCAGTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATATTTGGTACACACTCTCTAGCCTCTTGCCTCTACCTGCAGTGT  345

seq1  ATGGTGCAGCAACCAGAATTTCTGGCCGACATCTATACTCTCATACCCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCAGCAACCAGAATTTCTGGCCGACATCTATACTCTCATACCCTA  395

seq1  CAAGTCACTCACTTTCCCCAGCTAACATCAGTACCTACTTCATCAAACTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCACTCACTTTCCCCAGCTAACATCAGTACCTACTTCATCAAACTA  445

seq1  CTCAGATACATAGTTTCTATAAAATAATATGTCTCCCCACCACCACTTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATACATAGTTTCTATAAAATAATATGTCTCCCCACCACCACTTGC  495

seq1  TCTTGTCAGTTTTCCTCCAAAATCTGACCCTAAACCACTGTGAACTGTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAGTTTTCCTCCAAAATCTGACCCTAAACCACTGTGAACTGTCA  545

seq1  CCACACATGGTATCATGATCATGTCATGAGGTCAGTCGCATGTGCATTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATGGTATCATGATCATGTCATGAGGTCAGTCGCATGTGCATTAG  595

seq1  CCTGCCTCTCAGGCTGCTTATCTGCTTGGCCACCTGCAATTTCTAATGAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTCAGGCTGCTTATCTGCTTGGCCACCTGCAATTTCTAATGAC  645

seq1  TTGCATTTTTCTGCTAATGAGCTTCACTTGTCAATTAGGAATTATGCACC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTTTCTGCTAATGAGCTTCACTTGTCAATTAGGAATTATGCACC  695

seq1  TTTATGTCAAATGCCTCCTAAAACAAAGGCTCTACCTTCCCTGAGGAAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCAAATGCCTCCTAAAACAAAGGCTCTACCTTCCCTGAGGAAGA  745

seq1  AGGAATCCCACTTACAGAGCATAGTGCCTGCACCCAATAGCAGCCTTCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCCCACTTACAGAGCATAGTGCCTGCACCCAATAGCAGCCTTCTT  795

seq1  GTTGGGCAGACAAACAACCATGCAACCATATCAGACTTGCCTAGTCAACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCAGACAAACAACCATGCAACCATATCAGACTTGCCTAGTCAACT  845

seq1  TCCATAGTTATGATATCCAATCCACTCCAATAAGTAAGTGTGTGTGTGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTTATGATATCCAATCCACTCCAATAAGTAAGTGTGTGTGTGTG  895

seq1  TGTGTGTGTGCGCGTGCACTCACAGATGTGATGTGTAGGTTTATATGTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCGCGTGCACTCACAGATGTGATGTGTAGGTTTATATGTGT  945

seq1  GTCTTTTTGAACTCCTGACCCACCGTATACTATTTATAACATCATTAAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTGAACTCCTGACCCACCGTATACTATTTATAACATCATTAAAT  995

seq1  ATTTGTTGGCTCATATCACACTGACCTTTTATGCAACAATAGATATCATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGGCTCATATCACACTGACCTTTTATGCAACAATAGATATCATA  1045

seq1  ACATTTTCTGTTTTTTTTTTCCACCTTCCAAAGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGTTTTTTTTTTCCACCTTCCAAAGAATTC  1083

seq1: chr10_110000249_110001294
seq2: B6Ng01-190G19.g_65_1110

seq1  GAATTCACACTCTGACATAGGCACAGGCCTAGCCCTAGAGTTTGGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCTGACATAGGCACAGGCCTAGCCCTAGAGTTTGGTTTGT  50

seq1  TAGGAGTCCGCAGTACAATGGTGAGACCTCTCAAAGCAGTCTTGGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTCCGCAGTACAATGGTGAGACCTCTCAAAGCAGTCTTGGCAGAG  100

seq1  TTAGCTCCTGCACAGTCATAATGAGCAATGACTGAGATTCAAGGGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCCTGCACAGTCATAATGAGCAATGACTGAGATTCAAGGGTTTTT  150

seq1  CTACATATTGATTCAACCATTATTTTTCCCACGTGCATTTGTTAGAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATTGATTCAACCATTATTTTTCCCACGTGCATTTGTTAGAAGGC  200

seq1  AAAGTTGGAGAATTGCATCAAATCTTTAAAAATCAGATCGTGTGCCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGAGAATTGCATCAAATCTTTAAAAATCAGATCGTGTGCCCACT  250

seq1  ATATTAATTACATGGTCCAGCCTTACTTTGTCCTTCTAAGAAATTGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATTACATGGTCCAGCCTTACTTTGTCCTTCTAAGAAATTGCTAA  300

seq1  ATGACCTACTGTTGCCATTAAAAGTTTGGTCCTGACAGTAGAGAGTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTACTGTTGCCATTAAAAGTTTGGTCCTGACAGTAGAGAGTGAAA  350

seq1  CCAGGAGACTATGTTAAAATTAGAATAAGCTTTAAAAGGAATCACACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGACTATGTTAAAATTAGAATAAGCTTTAAAAGGAATCACACATC  400

seq1  TGACCAAGGTGGTAAAATTAGCTAAAATATCTGCCAAAGAAAAATGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGGTGGTAAAATTAGCTAAAATATCTGCCAAAGAAAAATGGGAA  450

seq1  GTTCTAAGGCACCAGATGTCTCTGTGGGCTCCAGATTTGGAGTTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGGCACCAGATGTCTCTGTGGGCTCCAGATTTGGAGTTCTCTCT  500

seq1  TGCCTTTGAAAGCTTCTTTCAGAAGTATTGAGCCTTATAATGCATGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGAAAGCTTCTTTCAGAAGTATTGAGCCTTATAATGCATGTGGC  550

seq1  TTAGCATATGGGCTGTTATTTTGCACTTCTCTACTCTGAGTCTGCCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATATGGGCTGTTATTTTGCACTTCTCTACTCTGAGTCTGCCTTCT  600

seq1  CAATCAGGATCTCAGCAACTTTTCTAAGCTCAGTGATTATCTGGGGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGATCTCAGCAACTTTTCTAAGCTCAGTGATTATCTGGGGGTAT  650

seq1  GAGGTTTTCAAGAGAATTAAGCAAAAGTTGTGTGTGTGTGTGTGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTCAAGAGAATTAAGCAAAAGTTGTGTGTGTGTGTGTGTGTGTG  700

seq1  TGTGTGTGTGTCAATGAGATGTAGTATTTCTATCTTCATTTACATTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTCAATGAGATGTAGTATTTCTATCTTCATTTACATTTCCT  750

seq1  TATAAAGACTCAGCACAAAACGATTCAGAGTACATTCTTCCTTTTTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGACTCAGCACAAAACGATTCAGAGTACATTCTTCCTTTTTAAGA  800

seq1  AAGTCTTTTATGCTACCATTGGTAAGCTTGATCTTCTTGTGCAA-TTCCT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTCTTTTATGCTACCATTGGTAAGCTTGATCTTCTTGTGCAATTTCCT  850

seq1  AACAATGGGAAGAGGACTC-TTTTGCCAGGTTTTGGGACCC-TTTTCTTC  897
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  AACAATGGGAAGAGGACTCTTTTTGCCAGGTTTTGGGACCCTTTTTCTTC  900

seq1  ATTCTGGGTTGCCTCCTCCATCCTTAATAGAAGGGGAGGTGACTAGTGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGTTGCCTCCTCCATCCTTAATAGAAGGGGAGGTGACTAGTGTT  950

seq1  GCTGCAACTTGATATGCCATATTTGGTTGCTATCCATGGGAGGCCTGCCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAACTTGATATGCCATATTTGGTTGCTATCCATGGGAGGCCTGCCC  1000

seq1  TTTTCTGAAAAGAAATGGAGGAGAGTTTTATTGGGAGGGGAGGTGGGGG  1046
      ||||||||||   |||||||||||| ||||||||  ||||||||| |||
seq2  TTTTCTGAAA--GAATGGAGGAGAG-TTTATTGGAGGGGGAGGTGTGGG  1046