BAC Information

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BAC

Clone NameB6Ng01-192L07
Chromosome10 (Build37)
Map Location 27,690,270 - 27,826,476
singlet/doubletdoublet
Overlap geneLOC100040401, Ptprk
Upstream geneLama2, LOC100040385, LOC100040961
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192L07.bB6Ng01-192L07.g
ACCGA015874GA015875
length1,2051,095
definitionB6Ng01-192L07.b B6Ng01-192L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,690,270 - 27,691,485)(27,825,379 - 27,826,476)
sequence
gaattccattgacagactttgtaattttcattcttttttaaagcaaatgt
ttataagaagatctctttaaacattttatcaagaaacttttatgtacagc
aattttgatgtcaatttttctccaacatcaaatatttgtgagtctccatt
caaggcaaagagtattttccttggcccacagatagtacaaatgcttttgc
taaaacacctactattcttacaacatatacctgaatatatgcagcaagcc
taaagatggccatattgtccttacttgatttttttacaatattgatttcc
cccctttggaagataatgaaataggaagttacaaacatgctagatatctt
gtctaaggacagcttggagtgtctgttgattaatgattctggtagttagt
tttgattatcactgtgagaaaacttagaatgacttgagatatgagccttt
gaacatgtcttgattacattatttaaggaaaggagacctgcgcactccag
gtgggaccattccctaggcaacagatcttggatcacataagagttgatca
aatgagctgagcactaatatatatatatattaatatgcattaattgctct
ctgctcctgactttggattcaatataaccagttacttcaagttcctactg
ctgtgactccctctcatatgatagattattagaactgtgagtcacaaaac
acaaaactaaacaatgacaaaaaacaaacacacacacacaaaacttttct
ccattaaattgcttttttcagggtattttatcacaagctgggaagagaaa
ctcatcctatgacctagcccaaggctctgagtctcaaaggccctcagctc
agcaaaagggaaagaaacaaacacctcctttcactcagccagaagctgtc
ttgggaaaggcagacattggaatggagttaagttgtgaaaatctagagta
ctctattaggtcactgtcttccccaaatctctgatgttgaaccctgttgc
cttaacagaaagttccaacaaaaaagttcaagtaaatctaagtgcctgtc
tccacaaatatatacagtgaaccaaattgtgtgatgctaaaagaaatgta
gctccaggtatataacactatattgtccggattcagaagaaacttggaca
ggctaacctgtgccttagcatactaagagcgtgcgtggcttccaagcctt
tcccc

gaattcactagaacagggaatgtgctagtatctgggccgggaactgctct
cacttaacaagatgcatagtctctttcctctgattcaaacaattcttcaa
cggcaacagtttcaaaaggttaaaatgttcaccatgtaactcttaaacat
gtaatgtcaaatatctcaatcaataaaaggtaatttttattcttttcaca
catgctcaagtctctacccagttaaacagtacaaaatggatattagaaag
cctaaacagttatcttcatctcattacatcatcaaactgagtgtcaaggg
taagagttcggggagtacgatgcttgccctgccagtccaggacctagttc
agctccttgtacaaggaaggagggaaccaaggagaagaagtcattctctg
acctcagaaagtcattcttcgacttctccaaatatcctgtggcacagctc
ctcaactcaccacacaccctacataccacagtacacactacacaacacac
atgtacgcacacacactcacacatgacacacacacacacaacaaataaat
tttaaaaaaaaagagtctcaagaaaagagatctggaacaagtaacaaatt
ttgttttcctatccaaacaacctacacgatagcaaatttttcctaaatgt
tttaataagatgaggaaaaggcccaattatttcccagaacaatctcatag
acagttatatagtgcatctctatctgcatcttcagggacaatcctaccct
caccagtcctgtattatatttctacaattatgtatttcttttggtttcct
gaagattaagttctaaaaatattatcagattttagaaaccatttaaaacc
aattaggacacgtatattttcggaaaaaagaagaaagaaagaaggaagaa
gaaaggaatgaatgaagaagatgagaaggaagaagaaaagaagcttgaaa
ttaatttattagattatcctaaaaactaggcaaggttcctttattcatat
acctaatgttttcattggctcccgggttccctttccgcccacggtacaat
aggaccttattttctctggaatgttgcccaggtcttggactacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27690270_27691485
seq2: B6Ng01-192L07.b_48_1252

seq1  GAATTCCATTGACAGACTTTGTAATTTTCATTCTTTTTTAAAGCAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGACAGACTTTGTAATTTTCATTCTTTTTTAAAGCAAATGT  50

seq1  TTATAAGAAGATCTCTTTAAACATTTTATCAAGAAACTTTTATGTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAAGATCTCTTTAAACATTTTATCAAGAAACTTTTATGTACAGC  100

seq1  AATTTTGATGTCAATTTTTCTCCAACATCAAATATTTGTGAGTCTCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATGTCAATTTTTCTCCAACATCAAATATTTGTGAGTCTCCATT  150

seq1  CAAGGCAAAGAGTATTTTCCTTGGCCCACAGATAGTACAAATGCTTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAAGAGTATTTTCCTTGGCCCACAGATAGTACAAATGCTTTTGC  200

seq1  TAAAACACCTACTATTCTTACAACATATACCTGAATATATGCAGCAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACCTACTATTCTTACAACATATACCTGAATATATGCAGCAAGCC  250

seq1  TAAAGATGGCCATATTGTCCTTACTTGATTTTTTTACAATATTGATTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGCCATATTGTCCTTACTTGATTTTTTTACAATATTGATTTCC  300

seq1  CCCCTTTGGAAGATAATGAAATAGGAAGTTACAAACATGCTAGATATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGGAAGATAATGAAATAGGAAGTTACAAACATGCTAGATATCTT  350

seq1  GTCTAAGGACAGCTTGGAGTGTCTGTTGATTAATGATTCTGGTAGTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGGACAGCTTGGAGTGTCTGTTGATTAATGATTCTGGTAGTTAGT  400

seq1  TTTGATTATCACTGTGAGAAAACTTAGAATGACTTGAGATATGAGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTATCACTGTGAGAAAACTTAGAATGACTTGAGATATGAGCCTTT  450

seq1  GAACATGTCTTGATTACATTATTTAAGGAAAGGAGACCTGCGCACTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTCTTGATTACATTATTTAAGGAAAGGAGACCTGCGCACTCCAG  500

seq1  GTGGGACCATTCCCTAGGCAACAGATCTTGGATCACATAAGAGTTGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCATTCCCTAGGCAACAGATCTTGGATCACATAAGAGTTGATCA  550

seq1  AATGAGCTGAGCACTAATATATATATATATTAATATGCATTAATTGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTGAGCACTAATATATATATATATTAATATGCATTAATTGCTCT  600

seq1  CTGCTCCTGACTTTGGATTCAATATAACCAGTTACTTCAAGTTCCTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTGACTTTGGATTCAATATAACCAGTTACTTCAAGTTCCTACTG  650

seq1  CTGTGACTCCCTCTCATATGATAGATTATTAGAACTGTGAGTCAC-AAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGTGACTCCCTCTCATATGATAGATTATTAGAACTGTGAGTCACAAAAC  700

seq1  ACAAAACTAAACAATGACAAAAAACAAACACACACACACAAAACTTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTAAACAATGACAAAAAACAAACACACACACACAAAACTTTTCT  750

seq1  CCATTAAATTGCTTTTTTCAGGGTATTTTATCACAAGCTGGGAAGAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAATTGCTTTTTTCAGGGTATTTTATCACAAGCTGGGAAGAGAAA  800

seq1  CTCATCCTATGACCTAGCCCAAGGCTCTGAGTCTCAAAGGCCCTCAGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTATGACCTAGCCCAAGGCTCTGAGTCTCAAAGGCCCTCAGCTC  850

seq1  AGC-AAAGGGAAAGAAACAAACACCTCCTTTCACTCAGCCAGAAGCTGTC  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGGGAAAGAAACAAACACCTCCTTTCACTCAGCCAGAAGCTGTC  900

seq1  TTGGGAAAGGCAGACAATTGGAATGGAGTTAAGTTGTG-AAATCTAGAGT  947
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  TTGGGAAAGGCAGAC-ATTGGAATGGAGTTAAGTTGTGAAAATCTAGAGT  949

seq1  ACTCTATTTAGGTCACTGTCTTCCCCAAATCTCTGATGTTGAACCTGTTT  997
      |||||| ||||||||||||||||||||||||||||||||||||||   ||
seq2  ACTCTA-TTAGGTCACTGTCTTCCCCAAATCTCTGATGTTGAACCCTGTT  998

seq1  GCCTTAACAAGAAAGTTCCCAACAAAAAAGTTCAAGTTAAATCCTAAGTG  1047
      |||||||| |||||||| |||||||||||||||||| ||||| |||||||
seq2  GCCTTAAC-AGAAAGTT-CCAACAAAAAAGTTCAAG-TAAAT-CTAAGTG  1044

seq1  CCTGTCT-CACAAATATATACAGTGAACCAAAATTGTGTGATTGCTTAAA  1096
      ||||||| ||||||||||||||||||||| ||||||||||| ||| ||||
seq2  CCTGTCTCCACAAATATATACAGTGAACC-AAATTGTGTGA-TGC-TAAA  1091

seq1  AGAAATGTAGCTCCAAGTATATAACACTAATATTGT-CAGATCCAGAAGA  1145
      ||||||||||||||| |||||||||||| ||||||| | ||| |||||||
seq2  AGAAATGTAGCTCCAGGTATATAACACT-ATATTGTCCGGATTCAGAAGA  1140

seq1  AACTTGGAACAAAGGGCTAACCTTGGTGCCTTTTAGCATACCAAAGAGCG  1195
      ||||||| |||   |||||||||  |||||  |||||||| | |||||||
seq2  AACTTGG-ACA---GGCTAACCT--GTGCC--TTAGCATA-CTAAGAGCG  1181

seq1  TGC-TGGCTTCCAAGC--TTCCCC  1216
      ||| ||||||||||||  ||||||
seq2  TGCGTGGCTTCCAAGCCTTTCCCC  1205


seq1: chr10_27825379_27826476
seq2: B6Ng01-192L07.g_68_1162 (reverse)

seq1  GTGTAGTCC-AGAC--TGGCAACATTTC-GAG-AAATAA-GTCCTA-TGT  43
      ||||||||| ||||   ||||||||| | ||| |||||| |||||| |||
seq2  GTGTAGTCCAAGACCTGGGCAACATTCCAGAGAAAATAAGGTCCTATTGT  50

seq1  ACGGTTGGGCGAAAGG--AACCGGGAACC-ATGAAAACAT--AGTATATG  88
      || || ||  ||||||  | |||||| || ||||||||||   |||||||
seq2  ACCGTGGGCGGAAAGGGAACCCGGGAGCCAATGAAAACATTAGGTATATG  100

seq1  AATTAAAGGAACCCTG-CTAGTTTTTAAGATTATTCTAATAAATTAATTT  137
      || |||||||||| || |||||||||| || || ||||||||||||||||
seq2  AA-TAAAGGAACCTTGCCTAGTTTTTAGGA-TAATCTAATAAATTAATTT  148

seq1  CAAGCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  187
      ||||| ||||||||     ||||| |||    ||||   ||| ||| |||
seq2  CAAGC-TTCTTTTC-----TTCTTCCTTCTCATCTT--CTTCATTCATTC  190

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTGAAAATATA  237
         |||||||   ||| |||||||||||||   ||||||| |||||||||
seq2  ---CTTTCTT--CTTCCTTCTTTCTTTCTT--CTTTTTTCCGAAAATATA  233

seq1  CGTGT-CTTATTGGTTTTAAATGGTTTCTAAAATCTGATAATATTTTTAG  286
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTAATTGGTTTTAAATGGTTTCTAAAATCTGATAATATTTTTAG  283

seq1  AACTTAATCTTCAGGAAACCAAAAGAAATACATAATTGTAGAAATATAAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATCTTCAGGAAACCAAAAGAAATACATAATTGTAGAAATATAAT  333

seq1  ACAGGACTGGTGAGGGTAGGATTGTCCCTGAAGATGCAGATAGAGATGCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGGTGAGGGTAGGATTGTCCCTGAAGATGCAGATAGAGATGCA  383

seq1  CTATATAACTGTCTATGAGATTGTTCTGGGAAATAATTGGGCCTTTTCCT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAACTGTCTATGAGATTGTTCTGGGAAATAATTGGGCCTTTTCCT  433

seq1  CATCTTATTAAAACATTTAGGAAAAATTTGCTATCGTGTAGGTTGTTTGG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATTAAAACATTTAGGAAAAATTTGCTATCGTGTAGGTTGTTTGG  483

seq1  ATAGGAAAACAAAATTTGTTACTTGTTCCAGATCTCTTTTCTTGAGACTC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAACAAAATTTGTTACTTGTTCCAGATCTCTTTTCTTGAGACTC  533

seq1  TTTTTTTTTAAAATTTATTTGTTGTGTGTGTGTGTGTCATGTGTGAGTGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAAATTTATTTGTTGTGTGTGTGTGTGTCATGTGTGAGTGT  583

seq1  GTGTGCGTACATGTGTGTTGTGTAGTGTGTACTGTGGTATGTAGGGTGTG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGTACATGTGTGTTGTGTAGTGTGTACTGTGGTATGTAGGGTGTG  633

seq1  TGGTGAGTTGAGGAGCTGTGCCACAGGATATTTGGAGAAGTCGAAGAATG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGTTGAGGAGCTGTGCCACAGGATATTTGGAGAAGTCGAAGAATG  683

seq1  ACTTTCTGAGGTCAGAGAATGACTTCTTCTCCTTGGTTCCCTCCTTCCTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGAGGTCAGAGAATGACTTCTTCTCCTTGGTTCCCTCCTTCCTT  733

seq1  GTACAAGGAGCTGAACTAGGTCCTGGACTGGCAGGGCAAGCATCGTACTC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGAGCTGAACTAGGTCCTGGACTGGCAGGGCAAGCATCGTACTC  783

seq1  CCCGAACTCTTACCCTTGACACTCAGTTTGATGATGTAATGAGATGAAGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAACTCTTACCCTTGACACTCAGTTTGATGATGTAATGAGATGAAGA  833

seq1  TAACTGTTTAGGCTTTCTAATATCCATTTTGTACTGTTTAACTGGGTAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTAGGCTTTCTAATATCCATTTTGTACTGTTTAACTGGGTAGA  883

seq1  GACTTGAGCATGTGTGAAAAGAATAAAAATTACCTTTTATTGATTGAGAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAGCATGTGTGAAAAGAATAAAAATTACCTTTTATTGATTGAGAT  933

seq1  ATTTGACATTACATGTTTAAGAGTTACATGGTGAACATTTTAACCTTTTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACATTACATGTTTAAGAGTTACATGGTGAACATTTTAACCTTTTG  983

seq1  AAACTGTTGCCGTTGAAGAATTGTTTGAATCAGAGGAAAGAGACTATGCA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTGCCGTTGAAGAATTGTTTGAATCAGAGGAAAGAGACTATGCA  1033

seq1  TCTTGTTAAGTGAGAGCAGTTCCCGGCCCAGATACTAGCACATTCCCTGT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAAGTGAGAGCAGTTCCCGGCCCAGATACTAGCACATTCCCTGT  1083

seq1  TCTAGTGAATTC  1098
      ||||||||||||
seq2  TCTAGTGAATTC  1095


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