BAC Information

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BAC

Clone NameB6Ng01-193E18
Chromosome10 (Build37)
Map Location 112,115,601 - 112,245,666
singlet/doubletdoublet
Overlap genenone
Upstream geneKrr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
Downstream geneLOC100042639, 4921506J03Rik, LOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193E18.bB6Ng01-193E18.g
ACCGA016308GA016309
length937952
definitionB6Ng01-193E18.b B6Ng01-193E18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,245,111 - 112,245,666)(112,115,601 - 112,116,371)
sequence
gaattctggtacaggaaaggtttaatagaatgggggatgggtggacagag
tctatgaagaattaacactaaaggcattttgaaaaaatcatatggaaacc
tacactataggatcagtgtgtgtgtctgtgtgtgtgcgtgtgtgtgtctc
tgtgtgtgtgtataaatggagtcatcctacagcaggtttatatcaccccc
actagatgccactaaatgatacataagatgcctagtatcaagaacagata
acctcttattgagctgttagcaaatgaagtcccacagccatcaagtatta
tgtgttcctgtcaacactcacatctattcccagtaacttgacagtaagat
tctattgctgaagaaacaacttatttgaacatggagaaacaagctggtac
ttgcctgggaactcaatccctataggccagatttcatagtgttagaaggt
cgtattcatgggactagaggagaaaagatcttaacaagatctgacaagac
atgaccagttatgcaatagtgggacagatattgtggaaatacgcaaccac
ttctatattggatttaaggtccaattcacaagttgaacctatacatggct
ctgtaatcaaagagaaaaactggctatacatgtcctaggtcctaggggag
aactattactctgataaatgcacataggattatatcaactcctaatgatt
tattctttctcacagattggggcatcagccaccttcaaataagacattat
atcacagagcttcttccctgggctaagtattcattgctgaagtgtgaaga
ggtagagagcatatatgactcaggagtgagcccaggcatggtggcgcatg
cctttaatcccagcacttgggaggcagaggcaggctaatttctgagttcg
agccagcctggtctacagagtgagtttcaggacagcc

gaattctataaagtcattatcaggatttatgaaatcaattcatctctaca
gcattactatgtgaaagtacattttcatattgattctgtaggaaatctgc
ccagtagagtgggctaatgcccaggaatcattaggatgtgaaatagtgac
aggaaaggcatatcatcagcaagaagcaatcctgcattcttggaactcgc
ccattacagtcatacaaaactgtagcccatctccagagacctcacttgtt
tgccttagcctttcttagattgctttttgacaggaatcaattaattatgc
attatgatatgtccgcatgcctacggtggtcagggagtagaatgcaatgg
ctcccataggttcacatgtttgaatacatggtgactctagttggtggaac
tgcttttgaaggattaggagttgtggtcttgttgaaggagttgagttact
ggagggggcagagggacaggttttgtgataattccagtgttcctttttct
gcctcaggaagtgagctctcagttactgctccagtgccatgcctgtttgc
ctgctactgtttcctaccatgatggtcattgactggctttaaccctttaa
aactatcagcccaaatgaactctttgttctgtgagttgccttggtcatgg
tgtctcattgcagtcataaaaaagtacacaagtgagcccaagtaactgaa
atctcagtgtggattgggcaggactcatgattagttcagtaagtatttgt
aattgatgactactggaaaaggaagagtcagctttctttatgtttgtgga
acccaagagtaaccccaaactccagtagattgccccacacccatgcaata
cagtcatcactaagggaacttagagaatatgaaaagagcacaaaaaataa
aggcagggggtcagatagtgtaggaagtagagatgatggggatggggtgt
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_112245111_112245666
seq2: B6Ng01-193E18.b_45_600 (reverse)

seq1  ATAGAAGTGGTTGCGTATTTCCACAATATCTGTCCCACTATTGCATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTGGTTGCGTATTTCCACAATATCTGTCCCACTATTGCATAACT  50

seq1  GGTCATGTCTTGTCAGATCTTGTTAAGATCTTTTCTCCTCTAGTCCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGTCTTGTCAGATCTTGTTAAGATCTTTTCTCCTCTAGTCCCATG  100

seq1  AATACGACCTTCTAACACTATGAAATCTGGCCTATAGGGATTGAGTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGACCTTCTAACACTATGAAATCTGGCCTATAGGGATTGAGTTCCC  150

seq1  AGGCAAGTACCAGCTTGTTTCTCCATGTTCAAATAAGTTGTTTCTTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTACCAGCTTGTTTCTCCATGTTCAAATAAGTTGTTTCTTCAGC  200

seq1  AATAGAATCTTACTGTCAAGTTACTGGGAATAGATGTGAGTGTTGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATCTTACTGTCAAGTTACTGGGAATAGATGTGAGTGTTGACAGG  250

seq1  AACACATAATACTTGATGGCTGTGGGACTTCATTTGCTAACAGCTCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAATACTTGATGGCTGTGGGACTTCATTTGCTAACAGCTCAATA  300

seq1  AGAGGTTATCTGTTCTTGATACTAGGCATCTTATGTATCATTTAGTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTATCTGTTCTTGATACTAGGCATCTTATGTATCATTTAGTGGCA  350

seq1  TCTAGTGGGGGTGATATAAACCTGCTGTAGGATGACTCCATTTATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGGGGGTGATATAAACCTGCTGTAGGATGACTCCATTTATACACA  400

seq1  CACACAGAGACACACACACGCACACACACAGACACACACACTGATCCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGACACACACACGCACACACACAGACACACACACTGATCCTAT  450

seq1  AGTGTAGGTTTCCATATGATTTTTTCAAAATGCCTTTAGTGTTAATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGGTTTCCATATGATTTTTTCAAAATGCCTTTAGTGTTAATTCTT  500

seq1  CATAGACTCTGTCCACCCATCCCCCATTCTATTAAACCTTTCCTGTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTCTGTCCACCCATCCCCCATTCTATTAAACCTTTCCTGTACCA  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556


seq1: chr10_112115601_112116371
seq2: B6Ng01-193E18.g_244_1016

seq1  TCCTGCATTCTTGGAACTCGCCCATTACAGTCATACAAAACTGTAGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATTCTTGGAACTCGCCCATTACAGTCATACAAAACTGTAGCCCA  50

seq1  TCTCCAGAGACCTCACTTGTTTGCCTTAGCCTTTCTTAGATTGCTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGACCTCACTTGTTTGCCTTAGCCTTTCTTAGATTGCTTTTTG  100

seq1  ACAGGAATCAATTAATTATGCATTATGATATGTCCGCATGCCTACGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATCAATTAATTATGCATTATGATATGTCCGCATGCCTACGGTGG  150

seq1  TCAGGGAGTAGAATGCAATGGCTCCCATAGGTTCACATGTTTGAATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGTAGAATGCAATGGCTCCCATAGGTTCACATGTTTGAATACAT  200

seq1  GGTGACTCTAGTTGGTGGAACTGCTTTTGAAGGATTAGGAGTTGTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCTAGTTGGTGGAACTGCTTTTGAAGGATTAGGAGTTGTGGTCT  250

seq1  TGTTGAAGGAGTTGAGTTACTGGAGGGGGCAGAGGGACAGGTTTTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGGAGTTGAGTTACTGGAGGGGGCAGAGGGACAGGTTTTGTGAT  300

seq1  AATTCCAGTGTTCCTTTTTCTGCCTCAGGAAGTGAGCTCTCAGTTACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGTGTTCCTTTTTCTGCCTCAGGAAGTGAGCTCTCAGTTACTGC  350

seq1  TCCAGTGCCATGCCTGTTTGCCTGCTACTGTTTCCTACCATGATGGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCCATGCCTGTTTGCCTGCTACTGTTTCCTACCATGATGGTCAT  400

seq1  TGACTGGCTTTAACCCTTTAAAACTATCAGCCCAAATGAACTCTTTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCTTTAACCCTTTAAAACTATCAGCCCAAATGAACTCTTTGTTC  450

seq1  TGTGAGTTGCCTTGGTCATGGTGTCTCATTGCAGTCATAAAAAAGTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTGCCTTGGTCATGGTGTCTCATTGCAGTCATAAAAAAGTACAC  500

seq1  AAGTGAGCCCAAGTAACTGAAATCTCAGTGTGGATTGGGCAGGACTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGCCCAAGTAACTGAAATCTCAGTGTGGATTGGGCAGGACTCATG  550

seq1  ATTAGTTCAGTAAGTATTTGTAATTGATGACTACTGGAAAAGGAAGAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCAGTAAGTATTTGTAATTGATGACTACTGGAAAAGGAAGAGTC  600

seq1  AGCTTTCTTTATGTTTGTGGAACCCAAGAGTAACCCCAAACTCCAGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTTTATGTTTGTGGAACCCAAGAGTAACCCCAAACTCCAGTAGA  650

seq1  TTGCCCCACACCCATGCAATACAGTCATCACTAAGGGAACTTAGAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCACACCCATGCAATACAGTCATCACTAAGGGAACTTAGAGAATA  700

seq1  TGAAAAGAGCACAAAAAATAAAGGCA-GGGGTCAGATAGTGTAGGAAGTA  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAAAAGAGCACAAAAAATAAAGGCAGGGGGTCAGATAGTGTAGGAAGTA  750

seq1  GAGATGAT-GGGATGGGGTGTGC  771
      |||||||| ||||||||||||||
seq2  GAGATGATGGGGATGGGGTGTGC  773


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