BAC Information

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BAC

Clone NameB6Ng01-194C18
Chromosome10 (Build37)
Map Location 63,388,162 - 63,481,651
singlet/doubletdoublet
Overlap geneCtnna3, Lrrtm3
Upstream geneSlc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194C18.bB6Ng01-194C18.g
ACCGA016940GA016941
length1,1261,094
definitionB6Ng01-194C18.b B6Ng01-194C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,388,162 - 63,389,289)(63,480,592 - 63,481,651)
sequence
gaattcatattacaaagccaacccatcaggaatgtaagcctgttcatgag
ctctgacatgttagactgctactcaatatgaacaactcttaagggtagcc
ctggaggtgggtcctggagacagctcagttgggtaaagagaggctataca
tacctgggcacatgagtatcatccccatgtaaaaatgatgggtgtctggt
aggggtgcagagtggtagatccctgcagcttgccggttaactagtctatc
acactaggattctcttaggttccagtgactttgtctccaaaccaagaagg
acaacagctaaagagcggcatctaaggttgagctctgacttatacatgtt
ttcatgcatgcacacacatgagcacacacacatacacacacaaacacaca
aacatacacacacatgcatacaaaaacacacatactcaaacatacgcata
caaagttactagattgactcttgagaatggcctgatacctggccaggctc
cctgcatctccccctgatcatgtgctctctacccaagcatctgattctct
ttctaccagcttcctaccagctctctgttttcatttgttcagtttcttta
cttatttttagcatttagtttgagagtgggtatctgtctcccagttggga
atagtcaaaactaagtgtatttttttactctcctaaacagtttattttag
aaaatatctttgcaaaataaattttgcaatttctaagcagtttccaaaag
caggcagatctgagatcagactgggttatgttttcttgagtgttaaattt
ggcttatatcgctttccaaaatataatttatattaaaagtcttgctgggt
ttatgagatttctagagccatcctggaggaggcagtgatgaagagatgat
aaacccctgaatattcacagcctgttataatttttggtatctgtgtcttg
tttgaatagctgatatttttattttcctacaaatgaaaaaaaggtggttt
atttatgatagttcttccaagaaagaattcatagtttaaaagatcttgca
aaacataaactaaaaatgtctttcttcttaacctctgatcaagcaatgta
tcagtgactgcatggggagctctgtc
gaattccttctcttatccacagaaaatgatctagtcccttgggggaacta
tatgttattgcagttttattgtatttcattatgaaagagcagatgggaat
tttcagtatgagtttggctgattttattttttgaagtgcgggaaaatatt
tccttgcgattctattagtcagctgggcatttcttctcccctggatcgcc
ctggaagacctctgtggttggttatctgacagcttcattagtggcaagct
agtgcaagacagggttctttgtatttcaggctctgacaagcaggttggtt
tagggggcatctactggggcagcaagcatgttcttgcttgtttcctctct
gttcaggcatgttttcacgtgggggattccatagagaaaatgaggaagta
agatgtaaaaaaaaaaaaaaagaaaaaaagaagatagaaatttatctgtt
gttttattatgttttttcagtttattcatttactttcatttgctttttat
tcattgactccatctattggaattacttggagctaactggtgacatatcc
taatctttctgttttgcctgtgttttctaatacaatgtttttattaagtc
tttaaggactgcatacatgcatgcatacactacattttgatcatattcat
cctcacttctccctatagcttgtcttagatccacagccttccctcaccct
catcctcatctccccttgactccatgacaattttttttttaaattgtacc
catgagtacaatttgtggagcctatatacacatggctctggagccatcca
ctaaaacaaggataaccaagtagataacacctttaaagtaaactgtctct
gcctctaagaccatgatcccctcccctgtgcatgctagaacgttagctga
cttgattttgtgcaggtcttcatgcaggtgatgatcgcgaactgcttgac
ttcatgaccagtggtcccagcatatctaagaatacaccattccactctgg
tcctctgcaactctggctcttacatatctcttaccccatctcatgaatgt
ttcctgagccttgagaagaaaattgataagatgtcatatttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63388162_63389289
seq2: B6Ng01-194C18.b_48_1173

seq1  GAATTCATATTACAAAGCCAACCCATCAGGAATGTAAGCCTGTTCATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTACAAAGCCAACCCATCAGGAATGTAAGCCTGTTCATGAG  50

seq1  CTCTGACATGTTAGACTGCTACTCAATATGAACAACTCTTAAGGGTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACATGTTAGACTGCTACTCAATATGAACAACTCTTAAGGGTAGCC  100

seq1  CTGGAGGTGGGTCCTGGAGACAGCTCAGTTGGGTAAAGAGAGGCTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTGGGTCCTGGAGACAGCTCAGTTGGGTAAAGAGAGGCTATACA  150

seq1  TACCTGGGCACATGAGTATCATCCCCATGTAAAAATGATGGGTGTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGCACATGAGTATCATCCCCATGTAAAAATGATGGGTGTCTGGT  200

seq1  AGGGGTGCAGAGTGGTAGATCCCTGCAGCTTGCCGGTTAACTAGTCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGCAGAGTGGTAGATCCCTGCAGCTTGCCGGTTAACTAGTCTATC  250

seq1  ACACTAGGATTCTCTTAGGTTCCAGTGACTTTGTCTCCAAACCAAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGGATTCTCTTAGGTTCCAGTGACTTTGTCTCCAAACCAAGAAGG  300

seq1  ACAACAGCTAAAGAGCGGCATCTAAGGTTGAGCTCTGACTTATACATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCTAAAGAGCGGCATCTAAGGTTGAGCTCTGACTTATACATGTT  350

seq1  TTCATGCATGCACACACATGAGCACACACACATACACACACAAACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCATGCACACACATGAGCACACACACATACACACACAAACACACA  400

seq1  AACATACACACACATGCATACAAAAACACACATACTCAAACATACGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACACACACATGCATACAAAAACACACATACTCAAACATACGCATA  450

seq1  CAAAGTTACTAGATTGACTCTTGAGAATGGCCTGATACCTGGCCAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTACTAGATTGACTCTTGAGAATGGCCTGATACCTGGCCAGGCTC  500

seq1  CCTGCATCTCCCCCTGATCATGTGCTCTCTACCCAAGCATCTGATTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCTCCCCCTGATCATGTGCTCTCTACCCAAGCATCTGATTCTCT  550

seq1  TTCTACCAGCTTCCTACCAGCTCTCTGTTTTCATTTGTTCAGTTTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCAGCTTCCTACCAGCTCTCTGTTTTCATTTGTTCAGTTTCTTTA  600

seq1  CTTATTTTTAGCATTTAGTTTGAGAGTGGGTATCTGTCTCCCAGTTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTAGCATTTAGTTTGAGAGTGGGTATCTGTCTCCCAGTTGGGA  650

seq1  ATAGTCAAAACTAAGTGTATTTTTTTACTCTCCTAAACAGTTTATTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAAAACTAAGTGTATTTTTTTACTCTCCTAAACAGTTTATTTTAG  700

seq1  AAAATATCTTTGCAAAATAAATTTTGCAATTTCTAAGCAGTTTCCAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTTTGCAAAATAAATTTTGCAATTTCTAAGCAGTTTCCAAAAG  750

seq1  CAGGCAGATCTGAGATCAGACTGGGTTATGTTTTCTTGAGTGTTAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATCTGAGATCAGACTGGGTTATGTTTTCTTGAGTGTTAAATTT  800

seq1  GGCTTATATCGCTTTCCAAAATATAATTTATATTAAAAGTCTTGCTGGTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCTTATATCGCTTTCCAAAATATAATTTATATTAAAAGTCTTGCTGGGT  850

seq1  TTATGAGATTTCTAGAGCCATCCTGGAGGAGGCAGTGATGAAGAGATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGATTTCTAGAGCCATCCTGGAGGAGGCAGTGATGAAGAGATGAT  900

seq1  AAACCCCTGAATATTCACAGCCTGTTATAATTTTTGGTATCTGTGTC-TG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAACCCCTGAATATTCACAGCCTGTTATAATTTTTGGTATCTGTGTCTTG  950

seq1  TTTGAATAGCTGATA-TTTTATTTTCTTACAAATGAAAAAAA-GTGGTTT  997
      ||||||||||||||| |||||||||| ||||||||||||||| |||||||
seq2  TTTGAATAGCTGATATTTTTATTTTCCTACAAATGAAAAAAAGGTGGTTT  1000

seq1  A-TTATGATAGTTCTTTCAAGAAAGAATTCATAGTTTAAAAGAATCTTGC  1046
      | |||||||||||||| ||||||||||||||||||||||||| |||||| 
seq2  ATTTATGATAGTTCTTCCAAGAAAGAATTCATAGTTTAAAAG-ATCTTG-  1048

seq1  CAAAACATAAAAAGGAAAAAAATGTCTTTCTTCTTAA-CTCTGAATCAAG  1095
      |||||||||||      |||||||||||||||||||| ||||| ||||||
seq2  CAAAACATAAA----CTAAAAATGTCTTTCTTCTTAACCTCTG-ATCAAG  1093

seq1  C-ATGTATCAGTTGACTGCATGGTGAGCTCTGTC  1128
      | ||||||||| ||||||||||| ||||||||||
seq2  CAATGTATCAG-TGACTGCATGGGGAGCTCTGTC  1126

seq1: chr10_63480592_63481651
seq2: B6Ng01-194C18.g_102_1156 (reverse)

seq1  TATAAATATGACATCTCTATCATATTCTCTTCTTCCAAGGCTCAGGAAAC  50
      |||||||||||||||| ||||| ||| ||||||  |||||||||||||||
seq2  TATAAATATGACATCT-TATCA-ATTTTCTTCT--CAAGGCTCAGGAAAC  46

seq1  A-TCATGGAAGATGGGGGTAGAGATATTGTAAGAGCCAGAAGTTGCAGAG  99
      | |||||  ||||||||  ||||||| |||||||||||| ||||||||||
seq2  ATTCATG--AGATGGGGTAAGAGATA-TGTAAGAGCCAG-AGTTGCAGAG  92

seq1  GACCAGAGTGGAATGGTGTATTC-TAGATATGCTGGGACCACTGGTCATG  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACCAGAGTGGAATGGTGTATTCTTAGATATGCTGGGACCACTGGTCATG  142

seq1  AAGTCAAAGCAGTTCGCGATCATCACCTGCATG-AGACCTGCACAAAATC  197
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGTC-AAGCAGTTCGCGATCATCACCTGCATGAAGACCTGCACAAAATC  191

seq1  AAGTCAGCTAACGTTCTAGCATGCACAGGGGAGGGGATCATGGTCTTAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCTAACGTTCTAGCATGCACAGGGGAGGGGATCATGGTCTTAGA  241

seq1  GGCAGAGACAGTTTACTTTAAAGGTGTTATCTACTTGGTTATCCTTGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGACAGTTTACTTTAAAGGTGTTATCTACTTGGTTATCCTTGTTT  291

seq1  TAGTGGATGGCTCCAGAGCCATGTGTATATAGGCTCCACAAATTGTACTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGATGGCTCCAGAGCCATGTGTATATAGGCTCCACAAATTGTACTC  341

seq1  ATGGGTACAATTT-AAAAAAAAATTGTCATGGAGTCAAGGGGAGATGAGG  396
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGGGTACAATTTAAAAAAAAAATTGTCATGGAGTCAAGGGGAGATGAGG  391

seq1  ATGAGGGTGAGGGAAGGCTGTGGATCTAAGACAAGCTATAGGGAGAAGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGTGAGGGAAGGCTGTGGATCTAAGACAAGCTATAGGGAGAAGTG  441

seq1  AGGATGAATATGATCAAAATGTAGTGTATGCATGCATGTATGCAGTCCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAATATGATCAAAATGTAGTGTATGCATGCATGTATGCAGTCCTT  491

seq1  AAAGACTTAATAAAAACATTGTATTAGAAAACACAGGCAAAACAGAAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTAATAAAAACATTGTATTAGAAAACACAGGCAAAACAGAAAGA  541

seq1  TTAGGATATGTCACCAGTTAGCTCCAAGTAATTCCAATAGATGGAGTCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATATGTCACCAGTTAGCTCCAAGTAATTCCAATAGATGGAGTCAA  591

seq1  TGAATAAAAAGCAAATGAAAGTAAATGAATAAACTGAAAAAACATAATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAAGCAAATGAAAGTAAATGAATAAACTGAAAAAACATAATAA  641

seq1  AACAACAGATAAATTTCTATCTTCTTTTTTTCTTTTTTTTTTTTTTTACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGATAAATTTCTATCTTCTTTTTTTCTTTTTTTTTTTTTTTACA  691

seq1  TCTTACTTCCTCATTTTCTCTATGGAATCCCCCACGTGAAAACATGCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTCCTCATTTTCTCTATGGAATCCCCCACGTGAAAACATGCCTG  741

seq1  AACAGAGAGGAAACAAGCAAGAACATGCTTGCTGCCCCAGTAGATGCCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAGGAAACAAGCAAGAACATGCTTGCTGCCCCAGTAGATGCCCC  791

seq1  CTAAACCAACCTGCTTGTCAGAGCCTGAAATACAAAGAACCCTGTCTTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAACCTGCTTGTCAGAGCCTGAAATACAAAGAACCCTGTCTTGC  841

seq1  ACTAGCTTGCCACTAATGAAGCTGTCAGATAACCAACCACAGAGGTCTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTGCCACTAATGAAGCTGTCAGATAACCAACCACAGAGGTCTTC  891

seq1  CAGGGCGATCCAGGGGAGAAGAAATGCCCAGCTGACTAATAGAATCGCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGATCCAGGGGAGAAGAAATGCCCAGCTGACTAATAGAATCGCAA  941

seq1  GGAAATATTTTCCCGCACTTCAAAAAATAAAATCAGCCAAACTCATACTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATTTTCCCGCACTTCAAAAAATAAAATCAGCCAAACTCATACTG  991

seq1  AAAATTCCCATCTGCTCTTTCATAATGAAATACAATAAAACTGCAATAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCCATCTGCTCTTTCATAATGAAATACAATAAAACTGCAATAAC  1041

seq1  ATATAGTTCCCCCA  1060
      ||||||||||||||
seq2  ATATAGTTCCCCCA  1055