BAC Information

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BAC

Clone NameB6Ng01-194K01
Chromosome10 (Build37)
Map Location 102,256,486 - 102,403,001
singlet/doubletdoublet
Overlap geneLOC382413
Upstream geneMgat4c, LOC667652, Nts, Pamci
Downstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194K01.bB6Ng01-194K01.g
ACCGA017270GA017271
length1,1511,094
definitionB6Ng01-194K01.b B6Ng01-194K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,256,486 - 102,257,648)(102,401,912 - 102,403,001)
sequence
gaattcagtcccacaatcacaaaaaagttaattgtacagtatccatgtga
gcttaaaggagacatcggaaaaataatgtgtgccaccggataggcatgcc
atgccatattcattttgaccttaagaaacagatctgctttaagttattct
ttttgatggaaacactacttattcctaaactttggatcatcacaaatgat
actgagtacaaccatttcaacaaaatactcatcaatgaccactttcttga
taaattcagcagtggtgtttaagtccatctttgcagtaccacataatatc
cagagcatcactcagttgactatttgtcacttctacaactaagtattagt
ctaaacctaaaggaagtctttatgaagaattttatttcatgaacgtccct
ttcaaccttaatcgtgtattttctttacaagcatcaagcataaagttggg
tacatcacttcttagacaagatcctatattttcttcatctcactaagatt
taaagcattaaacattacttccctgatctcacccacagctgcatcactga
ttctacacaaaacaactgcattcttcatcaaaagtgtattacctaccatg
atccttcattcctgccctttctaccctttgttaagttcatactataacaa
gtcttttccatcccccattctctttggcccctcagaaggttcatttagtt
ggtttggtttatttttttattttatttttgttcttctctttcacctattt
gttcttcagtattcacctatttcatacacatctcaaatctctaaaaatgg
tttacagtttcagatgttcagtccactatcgtcatggtggaaaagcatgc
tagcatacaggcagacacaattgctagagaaggagctgagagttttacat
tttgatctgacaacagccagatgaagagtctttctcaagcatccaggaag
agggtctctacacactgtaaggagcttgaatataggacctcaaacccact
caatacattttctcacaaggcatacctacttcacaggcatatctactata
gtagcacctccatagcaggcaattttgatcattaacaaaccattttaagc
agaagttcagtcttcctcatgtttgttgcattataataataagccatgaa
c

gaattccacaggaagaccaacagaatcaactaatgtgtatcctggactga
agcaccaatgaaagagcatacaggggctgggtctaggcttccccacacat
atgtagcatatatgcaactgtttgtttgtttggttttttgttttgtttta
tactcattcactacctctggctcttacaatcatttacctcctcttttacg
tagatttctatggctcaaagggaagggtgtgataaagacatctcattcag
atctgagaacacagatgtttcttactctatgcacatagtccagttgtcac
attgacatttactgcaagaagtaccttatgagagttgagagctgtgctgt
tttacgggtagagctctaccatcaacagtcaatttagtgttgtgtaaaaa
taaaattttaaatccaagttttcttgttcaggcctttaattttgacatat
gacaggcgttgtctgtatgaaatcaatgcacattttatgaggacctcaga
ggtgatgagagtttgtgaagaaaacggtttcagtgtaaaagctgactgga
gagaatatgcatgtttttttgtggactaaaagagtttgggtcctacgaca
aaaacaatcttcagttgtttgcttgttattgaaaggaaaagaatgttctc
tgcatgcgctgtggctattgttgttggtccagtatcatttatttactata
taaaatatgtcttgaataatgataacaactgtttcaaaatataatttcat
cgtattattttccatattttcccaattgaagtcaaaattatgctaaaaat
ccaaaatccactctttcctgagaataaacaactctctggataagcagcca
atgcagatacaacgccaaccaatgggtgaagaaattagttcagcactcca
ggaacatgttgttggttttgggccatcctttacagaattcttgtccatgt
attcagggtggagctgcctttagattttctttctgtgagcagatgcttaa
gtgaaaagtctttttgcaagcctccttcatatcaatggtttttccatgaa
gatttattggaaatgctatttaagcctttttcttctcttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102256486_102257648
seq2: B6Ng01-194K01.b_43_1193

seq1  GAATTCAGTCCCACAATCACAAAAAAGTTAATTGTACAGTATCCATGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCACAATCACAAAAAAGTTAATTGTACAGTATCCATGTGA  50

seq1  GCTTAAAGGAGACATCGGAAAAATAATGTGTGCCACCGGATAGGCATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGGAGACATCGGAAAAATAATGTGTGCCACCGGATAGGCATGCC  100

seq1  ATGCCATATTCATTTTGACCTTAAGAAACAGATCTGCTTTAAGTTATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATATTCATTTTGACCTTAAGAAACAGATCTGCTTTAAGTTATTCT  150

seq1  TTTTGATGGAAACACTACTTATTCCTAAACTTTGGATCATCACAAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGGAAACACTACTTATTCCTAAACTTTGGATCATCACAAATGAT  200

seq1  ACTGAGTACAACCATTTCAACAAAATACTCATCAATGACCACTTTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTACAACCATTTCAACAAAATACTCATCAATGACCACTTTCTTGA  250

seq1  TAAATTCAGCAGTGGTGTTTAAGTCCATCTTTGCAGTACCACATAATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAGCAGTGGTGTTTAAGTCCATCTTTGCAGTACCACATAATATC  300

seq1  CAGAGCATCACTCAGTTGACTATTTGTCACTTCTACAACTAAGTATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATCACTCAGTTGACTATTTGTCACTTCTACAACTAAGTATTAGT  350

seq1  CTAAACCTAAAGGAAGTCTTTATGAAGAATTTTATTTCATGAACGTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTAAAGGAAGTCTTTATGAAGAATTTTATTTCATGAACGTCCCT  400

seq1  TTCAACCTTAATCGTGTATTTTCTTTACAAGCATCAAGCATAAAGTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTTAATCGTGTATTTTCTTTACAAGCATCAAGCATAAAGTTGGG  450

seq1  TACATCACTTCTTAGACAAGATCCTATATTTTCTTCATCTCACTAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCACTTCTTAGACAAGATCCTATATTTTCTTCATCTCACTAAGATT  500

seq1  TAAAGCATTAAACATTACTTCCCTGATCTCACCCACAGCTGCATCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTAAACATTACTTCCCTGATCTCACCCACAGCTGCATCACTGA  550

seq1  TTCTACACAAAACAACTGCATTCTTCATCAAAAGTGTATTACCTACCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACAAAACAACTGCATTCTTCATCAAAAGTGTATTACCTACCATG  600

seq1  ATCCTTCATTCCTGCCCTTTCTACCCTTTGTTAAGTTCATACTATAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCATTCCTGCCCTTTCTACCCTTTGTTAAGTTCATACTATAACAA  650

seq1  GTCTTTTCCATCCCCCATTCTCTTTGGCCCCTCAGAAGGTTCATTTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCCATCCCCCATTCTCTTTGGCCCCTCAGAAGGTTCATTTAGTT  700

seq1  GGTTTGGTTTATTTTTTTATTTTATTTTTGTTCTTCTCTTTCACCTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTTTATTTTTTTATTTTATTTTTGTTCTTCTCTTTCACCTATTT  750

seq1  GTTCTTCAGTATTCACCTATTTCATACACATCTCAAATCTCTAAAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAGTATTCACCTATTTCATACACATCTCAAATCTCTAAAAATGG  800

seq1  TTTACAGTTTCAGATGTTCAGTCCACTATCGTCATGGTGG-AAAGCATGC  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTACAGTTTCAGATGTTCAGTCCACTATCGTCATGGTGGAAAAGCATGC  850

seq1  TAGCATACAGGCAGACACAA-TGCTAGAGAAGGAGCTGAGAGTTTTACAT  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGCATACAGGCAGACACAATTGCTAGAGAAGGAGCTGAGAGTTTTACAT  900

seq1  TTTGATCTGACAACAGCCAGATGAAGAGTCTTTCTCAAGCATCCAGGAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTGACAACAGCCAGATGAAGAGTCTTTCTCAAGCATCCAGGAAG  950

seq1  AGGGTCTCTACCACACTGTAAGGAGCTTGAATATAGGACCTCAAACCCAC  998
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCTA-CACACTGTAAGGAGCTTGAATATAGGACCTCAAACCCAC  999

seq1  TCAATACATTTTCTCCAACAAGGCCATACCTACTTCAACAAGGCAATATC  1048
      |||||||||||||||  |||||| |||||||||||||   |||| |||||
seq2  TCAATACATTTTCTC--ACAAGG-CATACCTACTTCA--CAGGC-ATATC  1043

seq1  TACTAATAGTAGCACCTCCCATAGGCCAAGCATATTTGAATCATT-ACAA  1097
      |||| |||||||||||| ||||||  || ||| ||||  |||||| ||||
seq2  TACT-ATAGTAGCACCT-CCATAG--CAGGCA-ATTTTGATCATTAACAA  1088

seq1  ACCATTTTAAAAGCAG-AGTCCAGTC-TCCTCATG-TTGTTGCCAATAAT  1144
      ||||||||  |||||| ||| ||||| |||||||| |||||||  || ||
seq2  ACCATTTT--AAGCAGAAGTTCAGTCTTCCTCATGTTTGTTGC--ATTAT  1134

seq1  AATAAAATAAGCCATGAAC  1163
      |||  ||||||||||||||
seq2  AAT--AATAAGCCATGAAC  1151


seq1: chr10_102401912_102403001
seq2: B6Ng01-194K01.g_64_1157 (reverse)

seq1  AAAAAAA------AAAAAGCTTTAAATAGCATTTCAAATAATATCTTCAG  44
      |||||||      ||||||  |||||||||||||| ||||| ||||||| 
seq2  AAAAAAAGAGAAGAAAAAGGCTTAAATAGCATTTCCAATAA-ATCTTCAT  49

seq1  GGAAAAACCATTGATATGAAGGAGGCTTGCAAAAGGACTTTTCACTTTAA  94
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  GGAAAAACCATTGATATGAAGGAGGCTTGCAAAAAGACTTTTCAC-TTAA  98

seq1  GCATCCTGCTCACAGAAAGAAAATCTAAAGGCAGCTCCACCCTGAATACA  144
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAT-CTGCTCACAGAAAGAAAATCTAAAGGCAGCTCCACCCTGAATACA  147

seq1  TGGACAAGAATTCTGTAAAGGATGG-CCAAAACCAACAACATGTTCCTGG  193
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGACAAGAATTCTGTAAAGGATGGCCCAAAACCAACAACATGTTCCTGG  197

seq1  AGTGCTGAACTAATTTCTTCACCCATTGGTTGGCCTTGTATCTGCATTGG  243
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTGCTGAACTAATTTCTTCACCCATTGGTTGGCGTTGTATCTGCATTGG  247

seq1  CTGCTTATCCAGAGAGTTGTTTATTCTCAGGAAAGAGTGGATTTTGGATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATCCAGAGAGTTGTTTATTCTCAGGAAAGAGTGGATTTTGGATT  297

seq1  TTTAGCATAATTTTGACTTCAATTGGGAAAATATGGAAAATAATACGATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATAATTTTGACTTCAATTGGGAAAATATGGAAAATAATACGATG  347

seq1  AAATTATATTTTGAAACAGTTGTTATCATTATTCAAGACATATTTTATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTTTGAAACAGTTGTTATCATTATTCAAGACATATTTTATAT  397

seq1  AGTAAATAAATGATACTGGACCAACAACAATAGCCACAGCGCATGCAGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAAATGATACTGGACCAACAACAATAGCCACAGCGCATGCAGAG  447

seq1  AACATTCTTTTCCTTTCAATAACAAGCAAACAACTGAAGATTGTTTTTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTTTTCCTTTCAATAACAAGCAAACAACTGAAGATTGTTTTTGT  497

seq1  CGTAGGACCCAAACTCTTTTAGTCCACAAAAAAACATGCATATTCTCTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGACCCAAACTCTTTTAGTCCACAAAAAAACATGCATATTCTCTCC  547

seq1  AGTCAGCTTTTACACTGAAACCGTTTTCTTCACAAACTCTCATCACCTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTTTTACACTGAAACCGTTTTCTTCACAAACTCTCATCACCTCT  597

seq1  GAGGTCCTCATAAAATGTGCATTGATTTCATACAGACAACGCCTGTCATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTCATAAAATGTGCATTGATTTCATACAGACAACGCCTGTCATA  647

seq1  TGTCAAAATTAAAGGCCTGAACAAGAAAACTTGGATTTAAAATTTTATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATTAAAGGCCTGAACAAGAAAACTTGGATTTAAAATTTTATTT  697

seq1  TTACACAACACTAAATTGACTGTTGATGGTAGAGCTCTACCCGTAAAACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAACACTAAATTGACTGTTGATGGTAGAGCTCTACCCGTAAAACA  747

seq1  GCACAGCTCTCAACTCTCATAAGGTACTTCTTGCAGTAAATGTCAATGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTCTCAACTCTCATAAGGTACTTCTTGCAGTAAATGTCAATGTG  797

seq1  ACAACTGGACTATGTGCATAGAGTAAGAAACATCTGTGTTCTCAGATCTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGGACTATGTGCATAGAGTAAGAAACATCTGTGTTCTCAGATCTG  847

seq1  AATGAGATGTCTTTATCACACCCTTCCCTTTGAGCCATAGAAATCTACGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGTCTTTATCACACCCTTCCCTTTGAGCCATAGAAATCTACGT  897

seq1  AAAAGAGGAGGTAAATGATTGTAAGAGCCAGAGGTAGTGAATGAGTATAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGAGGTAAATGATTGTAAGAGCCAGAGGTAGTGAATGAGTATAA  947

seq1  AACAAAACAAAAAACCAAACAAACAAACAGTTGCATATATGCTACATATG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAAACCAAACAAACAAACAGTTGCATATATGCTACATATG  997

seq1  TGTGGGGAAGCCTAGACCCAGCCCCTGTATGCTCTTTCATTGGTGCTTCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAAGCCTAGACCCAGCCCCTGTATGCTCTTTCATTGGTGCTTCA  1047

seq1  GTCCAGGATACACATTAGTTGATTCTGTTGGTCTTCCTGTGGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGATACACATTAGTTGATTCTGTTGGTCTTCCTGTGGAATTC  1094


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