BAC Information

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BAC

Clone NameB6Ng01-196C02
Chromosome10 (Build37)
Map Location 126,274,167 - 126,418,493
singlet/doubletdoublet
Overlap geneXrcc6bp1, LOC622567
Upstream geneLrig3, LOC100043547, LOC668336
Downstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196C02.bB6Ng01-196C02.g
ACCGA018354GA018355
length1,114801
definitionB6Ng01-196C02.b B6Ng01-196C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,274,167 - 126,275,264)(126,417,693 - 126,418,493)
sequence
ctgtctgcaccagctgtacaggtgacctccctgccttccacttaccagat
tcagaatatatgagacagttttaaacacgattttaaaatacagcatgtgc
aaatattgctgtgcttgacatatttactctgttgaaaaaaaaatggtcct
ttctgctttaaaccctgtgtgtactgtctgtcttctgccttctgaaagtc
tttctgcaaacagatgccgactgtctgtccttctgctcctgacgcttctg
ctccattcgttacacctactaggtgggacaatgctttcttttatggataa
gagtttaccaagacttcttgtcagacacagagttaaatgagagacgtata
gaagctgttctgatgcagaagtgcctctgttatgaatactcgaatgttct
tcccgtgaatggagcattatctaggtgcagagtctaagtccaaacaccca
ctctataaaacgctacaggcagcatgaagactggaacacgggttctgatg
tttgcaaagctgtgctcttttcttgtaccctacattatatccctggcact
ccactagtaccaactatgggtgtctcacacacacacacacacacacagag
agagagagagagagagagagagagagagagagagagagagagagagagag
agagatcaagaagtcgggagcagaagatgcatcaagaggaatctggagtc
tcttttcttaaaagacagttttcaatattcataagtttgtgccaaaggaa
aatggggtgaactcagaaaggctccctgggccaaagaaaactaaaacaag
cagtaatgcacggacagtgatatacccccatggaaagaggcatcagtata
aacaattgcctcccaggaagaacttgctacaactaaaaagaaacttagcg
tttagacattaaaataacaatgctttgcatccctgtttcaaatgaattga
cacactaaaggtatgggggcctatgtgcataaagactgggttagtggagg
aatacctagtagcctatgacttactttattgagaatgacaaatgttgaat
gtttaagcttaggaaaaatacacttagatgagaaaggagtacttacaggg
caaatggcctgatt
gaattcctaaacgagtgttaagatgcaggttctgtttgtaaatgatgtcc
aactcagctagttggcatggttgctgggtgccaagctgctcagaagcaag
cacgccttcccagagaatgcaattgaagaaaaggggaggggggagagaca
ccaagaggctgctggctggagaattcagattcctccagggagaaatgtga
aggacaaactacacacaaaaaagaaaacaaaactgtaactccaagaaaac
tcaaccagcaacctgacacggtcaggagccagctgctctgctctccgctg
cctgtcactcatcctgccggattaaacttcagctctgatttgctcagtgc
agctacagcacagtcccgagtcttcttatcccgatgtggcccgccaccct
caagacacctaggagaccctgcagggcgcacaggtgggaaggaggcacac
gccatgccggcttcttgtcactaccccctcctcttatgtcctttcccatc
ctgaagcgtgggtcctattcctgggatgaggctgcaacgggaactgaacc
ctggcagtaactgataaacacaggcagcctcccttgcggcgctcagcact
gctgagaggccagcaggagaggaggtgaacttgctgcgccgccgatctca
cagctgggttcagtgatgcagttagaacaggggacccttggcaatgagga
ggggcaggcagggctttcggttctctcagtgcagtttgcttcagaaaggc
caagaaaccagcaccgctcccctccccaatctatacagggaattccaaga
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126274167_126275264
seq2: B6Ng01-196C02.b_53_1166

seq1  CTGTCTGCACCAGCTGTACAGGTGACCTCCCTGCCTTCCACTTACCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCACCAGCTGTACAGGTGACCTCCCTGCCTTCCACTTACCAGAT  50

seq1  TCAGAATATATGAGACAGTTTTAAACACGATTTTAAAATACAGCATGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATATGAGACAGTTTTAAACACGATTTTAAAATACAGCATGTGC  100

seq1  AAATATTGCTGTGCTTGACATATTTACTCTGTTGAAAAAAAAATGGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGCTGTGCTTGACATATTTACTCTGTTGAAAAAAAAATGGTCCT  150

seq1  TTCTGCTTTAAACCCTGTGTGTACTGTCTGTCTTCTGCCTTCTGAAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTAAACCCTGTGTGTACTGTCTGTCTTCTGCCTTCTGAAAGTC  200

seq1  TTTCTGCAAACAGATGCCGACTGTCTGTCCTTCTGCTCCTGACGCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAAACAGATGCCGACTGTCTGTCCTTCTGCTCCTGACGCTTCTG  250

seq1  CTCCATTCGTTACACCTACTAGGTGGGACAATGCTTTCTTTTATGGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCGTTACACCTACTAGGTGGGACAATGCTTTCTTTTATGGATAA  300

seq1  GAGTTTACCAAGACTTCTTGTCAGACACAGAGTTAAATGAGAGACGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACCAAGACTTCTTGTCAGACACAGAGTTAAATGAGAGACGTATA  350

seq1  GAAGCTGTTCTGATGCAGAAGTGCCTCTGTTATGAATACTCGAATGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTTCTGATGCAGAAGTGCCTCTGTTATGAATACTCGAATGTTCT  400

seq1  TCCCGTGAATGGAGCATTATCTAGGTGCAGAGTCTAAGTCCAAACACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGAATGGAGCATTATCTAGGTGCAGAGTCTAAGTCCAAACACCCA  450

seq1  CTCTATAAAACGCTACAGGCAGCATGAAGACTGGAACACGGGTTCTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAAAACGCTACAGGCAGCATGAAGACTGGAACACGGGTTCTGATG  500

seq1  TTTGCAAAGCTGTGCTCTTTTCTTGTACCCTACATTATATCCCTGGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAGCTGTGCTCTTTTCTTGTACCCTACATTATATCCCTGGCACT  550

seq1  CCACTAGTACCAACTATGGGTGTCTCACACACACACACACACACACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGTACCAACTATGGGTGTCTCACACACACACACACACACACAGAG  600

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650

seq1  AGAGATCAAGAAGTCGGGAGCAGAAGATGCATCAAGAGGAATCTGGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCAAGAAGTCGGGAGCAGAAGATGCATCAAGAGGAATCTGGAGTC  700

seq1  TCTTTTCTTAAAAGACAGTTTTCAATATTCATAAGTTTGTGCCAAAGG-A  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTTTCTTAAAAGACAGTTTTCAATATTCATAAGTTTGTGCCAAAGGAA  750

seq1  AATGGGGTGAACTCAGAAAGGCTCCCT-GGCCAAAGAAAACTAAA--CAG  796
      ||||||||||||||||||||||||||| |||||||||||||||||   ||
seq2  AATGGGGTGAACTCAGAAAGGCTCCCTGGGCCAAAGAAAACTAAAACAAG  800

seq1  CAGTAATGCACGGACAGTGATATACCCCCATGG-AAGA-GCATCAGTAT-  843
      ||||||||||||||||||||||||||||||||| |||| |||||||||| 
seq2  CAGTAATGCACGGACAGTGATATACCCCCATGGAAAGAGGCATCAGTATA  850

seq1  AACAA-TGCCTCCCAGG-AGAAC-TGCTACAACT-AAAAGAAACTTAGCG  889
      ||||| ||||||||||| ||||| |||||||||| |||||||||||||||
seq2  AACAATTGCCTCCCAGGAAGAACTTGCTACAACTAAAAAGAAACTTAGCG  900

seq1  TTTAGACAATTAAAT-ACAATGC-TTGCAT-CCTGTTTCAAATGAATTGA  936
      |||||||| | |||| ||||||| |||||| |||||||||||||||||||
seq2  TTTAGACATTAAAATAACAATGCTTTGCATCCCTGTTTCAAATGAATTGA  950

seq1  CAC-TAAAAGGTATGGGGG-CTATGTGCATAAAGACT-GGTTAGTGGAGG  983
      |||   ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  CACACTAAAGGTATGGGGGCCTATGTGCATAAAGACTGGGTTAGTGGAGG  1000

seq1  -ATAACTAGTAGCC-ATGACTTACTTTATTGAGTATGACAATGGTTG-AT  1030
       ||| ||||||||| |||||||||||||||||| |||||||  |||| ||
seq2  AATACCTAGTAGCCTATGACTTACTTTATTGAGAATGACAAATGTTGAAT  1050

seq1  GGTTAAGTTTAGGAAAAAATAAAACCTTAGATGAGAAAGGAAGTACTTAC  1080
      | ||||| ||||| ||||||| |  ||||||||||||||| |||||||||
seq2  GTTTAAGCTTAGG-AAAAATACA--CTTAGATGAGAAAGG-AGTACTTAC  1096

seq1  AGGTGAAATGGCCTGATT  1098
      |||  |||||||||||||
seq2  AGGGCAAATGGCCTGATT  1114

seq1: chr10_126417693_126418493
seq2: B6Ng01-196C02.g_67_867 (reverse)

seq1  CTCTCTGGAATTCCTTGT-TAGGTTGGGGGAAGGGGAGCGGTGCGTGTTT  49
      |||| ||||||||| ||| ||| ||||||  |||||||||||||  ||||
seq2  CTCT-TGGAATTCCCTGTATAGATTGGGG--AGGGGAGCGGTGCTGGTTT  47

seq1  CTTGGCC-TTCTGAAGCAGACTGCACTGAGGAGAGCCG-AAGCCCTGCCT  97
      ||||||| |||||||||| |||||||||| |||| ||| |||||||||||
seq2  CTTGGCCTTTCTGAAGCAAACTGCACTGA-GAGAACCGAAAGCCCTGCCT  96

seq1  GCCCCTCCTCTTTGCC-AGGGTCCCCTGTTCTAACTGCATCACTG-ACCC  145
      |||||||||| ||||| |||||||||||||||||||||||||||| ||||
seq2  GCCCCTCCTCATTGCCAAGGGTCCCCTGTTCTAACTGCATCACTGAACCC  146

seq1  AGCTGTGAGATCGGCGGCGCAGCAAGTTCACCTCCTCTCCTGCTGGCCTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAGATCGGCGGCGCAGCAAGTTCACCTCCTCTCCTGCTGGCCTC  196

seq1  TCAGCAGTGCTGAGCGCCGCAAAGGGAGGCTGCCTGTGTTTATCAGTTAC  245
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGCAGTGCTGAGCGCCGC-AAGGGAGGCTGCCTGTGTTTATCAGTTAC  245

seq1  TGCCAGGGTTCAGTTCCCGTTGCAGCCTCATCCCAGGAATAGGACCCACG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGTTCAGTTCCCGTTGCAGCCTCATCCCAGGAATAGGACCCACG  295

seq1  CTTCAGGATGGGAAAGGACATAAGAGGAGGGGGTAGTGACAAGAAGCCGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGATGGGAAAGGACATAAGAGGAGGGGGTAGTGACAAGAAGCCGG  345

seq1  CATGGCGTGTGCCTCCTTCCCACCTGTGCGCCCTGCAGGGTCTCCTAGGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGTGTGCCTCCTTCCCACCTGTGCGCCCTGCAGGGTCTCCTAGGT  395

seq1  GTCTTGAGGGTGGCGGGCCACATCGGGATAAGAAGACTCGGGACTGTGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAGGGTGGCGGGCCACATCGGGATAAGAAGACTCGGGACTGTGCT  445

seq1  GTAGCTGCACTGAGCAAATCAGAGCTGAAGTTTAATCCGGCAGGATGAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGCACTGAGCAAATCAGAGCTGAAGTTTAATCCGGCAGGATGAGT  495

seq1  GACAGGCAGCGGAGAGCAGAGCAGCTGGCTCCTGACCGTGTCAGGTTGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGCGGAGAGCAGAGCAGCTGGCTCCTGACCGTGTCAGGTTGCT  545

seq1  GGTTGAGTTTTCTTGGAGTTACAGTTTTGTTTTCTTTTTTGTGTGTAGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGTTTTCTTGGAGTTACAGTTTTGTTTTCTTTTTTGTGTGTAGTT  595

seq1  TGTCCTTCACATTTCTCCCTGGAGGAATCTGAATTCTCCAGCCAGCAGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCACATTTCTCCCTGGAGGAATCTGAATTCTCCAGCCAGCAGCC  645

seq1  TCTTGGTGTCTCTCCCCCCTCCCCTTTTCTTCAATTGCATTCTCTGGGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGTCTCTCCCCCCTCCCCTTTTCTTCAATTGCATTCTCTGGGAA  695

seq1  GGCGTGCTTGCTTCTGAGCAGCTTGGCACCCAGCAACCATGCCAACTAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCTTGCTTCTGAGCAGCTTGGCACCCAGCAACCATGCCAACTAGC  745

seq1  TGAGTTGGACATCATTTACAAACAGAACCTGCATCTTAACACTCGTTTAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGACATCATTTACAAACAGAACCTGCATCTTAACACTCGTTTAG  795

seq1  GAATTC  801
      ||||||
seq2  GAATTC  801