BAC Information

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BAC

Clone NameB6Ng01-196D10
Chromosome10 (Build37)
Map Location 109,555,273 - 109,684,908
singlet/doubletdoublet
Overlap geneLOC100042502, LOC100042506
Upstream geneNav3, LOC100042497
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196D10.bB6Ng01-196D10.g
ACCGA018411GA018412
length9831,032
definitionB6Ng01-196D10.b B6Ng01-196D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,555,273 - 109,556,266)(109,683,892 - 109,684,908)
sequence
gattcctaattcactaaaattccttatcttttagccctttccttcttcat
tgctcaacactccttaatgtgtcatgattcagattctataaactctgttg
taatgaaatttcactgaaattactaaagatttccactaccaaatgcaatt
gcaataacttacctctcactccaacaactgcctgattggatcactaaatt
tcacaatgctctactgttcttgtaatactctccttagatccagtactgtc
atctccttcacatactgattgcttaatcatagctgactggacaaatactc
cttttgcctctattattatcctgctcatcttcaaagatgaaacaaccaat
aaaaaatgacaaaattcttatccttgggatgccagagagaaagaaaattc
aaccataaaacagttaggaaaaagttaagagaagatagtgcaacccaaga
gaagaaaataggaatcgcatgtaatctacttcatgggtgcgaggacatct
ttcttaagcctttacatctgcaatctcctgctgttttcactgcttcttca
tctcactaggaaatatgccttgtaacaacaaggagacatttttctttgta
gcccatcctggctaggatgagactattggccttcctcagcctctccagtg
ctgggaatagaggtaggtaacgccaccttgaggctatatttttcacttat
ttatgctattatattaaagtctccttgctgatggtgtttgtacgagagaa
gtgattggagaagaaaatgcaaggagatgttgaacagtttaaaaccctcc
cattcattaagattgagcttcatatagaaattaaatggatgttggttggc
ttcattatctatgatacactccaaataaaatatggtgaaaacacatcata
tacattaacatggcaatgtgctgtcatttttatctgtacatgcagatgaa
aaaatattctcaaatagactgttacactatatt
gaattcttatctcactagctaccaaccatcactcaacttatgaaaatgta
tgttcattataatgaaaggagagacagaaaagatggacactagaaatctc
ttcctgaatattccaaaatacaatgactattgttttcagttacaaagcaa
acacttttttaaattttaacttgtatctttgatagcaagacagttttcct
tggaatgattttgaaaattgggttttaaagaatcctgaattgacacgact
aaatggtcatgttaatgttgcagtttgtgtaccgtgatgctataacacta
aacttggatttagattatgtaaaacagttattggcatctggaattgcctt
attactaaccagtaccccctttgtcacactctgaaatttcctttcttgtt
gcttatgcaaaatcgttacttttgtatttttctactttttttattttttt
cctacaatgtattctgatcatattctttcctactttttcaacctccctcc
aagatcctacatactttcactacccactcaactttcttgtttcccttttg
ttgagagaaagaaagaaagagagaaggaagaaaagaatgataacaaaaag
caagaagaataagacccccaaaaatgagcaaagcaaaacaaagagtaccc
ccaccctaataatcatggatgccatatgtataagccaactacttcctagg
tattgtgacctgccctgattatcaagtatgttgaattatacttaatatgc
acagtgatatgccattgagaaaactgattttcattttgaacaggtattaa
ttccaaatagctttttggtcagagatgggctttgtatctatttctttctt
ttaattgctgatatttttgtctagttaaacttgtgtaggtctgatgtggt
tctttgtgagttcatattgtatatcagttctgtgtttctgaaagagtcat
tccacacgtctgtgagtcatcacaatgtctagctctcacagtcttttctt
tcacttctttaaggcatagatcccttgagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109555273_109556266
seq2: B6Ng01-196D10.b_51_1032

seq1  ATTCCTAATTCACTAAAATTCCTTATCTTTTAGCCCTTTCCTTCTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAATTCACTAAAATTCCTTATCTTTTAGCCCTTTCCTTCTTCATT  50

seq1  GCTCAACACTCCTTAATGTGTCATGATTCAGATTCTATAAACTCTGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACACTCCTTAATGTGTCATGATTCAGATTCTATAAACTCTGTTGT  100

seq1  AATGAAATTTCACTGAAATTACTAAAGATTTCCACTACCAAATGCAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTTCACTGAAATTACTAAAGATTTCCACTACCAAATGCAATTG  150

seq1  CAATAACTTACCTCTCACTCCAACAACTGCCTGATTGGATCACTAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTTACCTCTCACTCCAACAACTGCCTGATTGGATCACTAAATTT  200

seq1  CACAATGCTCTACTGTTCTTGTAATACTCTCCTTAGATCCAGTACTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCTCTACTGTTCTTGTAATACTCTCCTTAGATCCAGTACTGTCA  250

seq1  TCTCCTTCACATACTGATTGCTTAATCATAGCTGACTGGACAAATACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCACATACTGATTGCTTAATCATAGCTGACTGGACAAATACTCC  300

seq1  TTTTGCCTCTATTATTATCCTGCTCATCTTCAAAGATGAAACAACCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTCTATTATTATCCTGCTCATCTTCAAAGATGAAACAACCAATA  350

seq1  AAAAATGACAAAATTCTTATCCTTGGGATGCCAGAGAGAAAGAAAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACAAAATTCTTATCCTTGGGATGCCAGAGAGAAAGAAAATTCA  400

seq1  ACCATAAAACAGTTAGGAAAAAGTTAAGAGAAGATAGTGCAACCCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAAACAGTTAGGAAAAAGTTAAGAGAAGATAGTGCAACCCAAGAG  450

seq1  AAGAAAATAGGAATCGCATGTAATCTACTTCATGGGTGCGAGGACATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAGGAATCGCATGTAATCTACTTCATGGGTGCGAGGACATCTT  500

seq1  TCTTAAGCCTTTACATCTGCAATCTCCTGCTGTTTTCACTGCTTCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCCTTTACATCTGCAATCTCCTGCTGTTTTCACTGCTTCTTCAT  550

seq1  CTCACTAGGAAATATGCCTTGTAACAACAAGGAGACATTTTTCTTTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGGAAATATGCCTTGTAACAACAAGGAGACATTTTTCTTTGTAG  600

seq1  CCCATCCTGGCTAGGATGAGACTATTGGCCTTCCTCAGCCTCTCCAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGGCTAGGATGAGACTATTGGCCTTCCTCAGCCTCTCCAGTGC  650

seq1  TGGGAATAGAGGTAGGTAACGCCACCTTGAGGCTATATTTTTCACTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAGAGGTAGGTAACGCCACCTTGAGGCTATATTTTTCACTTATT  700

seq1  TATGCTATTATATTAAAGTCTCCTTGCTGATGGTGTTTGTACGAGAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTATTATATTAAAGTCTCCTTGCTGATGGTGTTTGTACGAGAGAAG  750

seq1  TGGATTGGAGAAGAAAATGCAAGGAGAATGTTGAACAGTTTAAAACCCTC  800
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  T-GATTGGAGAAGAAAATGCAAGGAG-ATGTTGAACAGTTTAAAACCCTC  798

seq1  CCATTCATTAAGATTGAGCTTCCATATAGAAATTAAATGGATGTTGGTTG  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCATTCATTAAGATTGAGCTT-CATATAGAAATTAAATGGATGTTGGTTG  847

seq1  GCTTCAATTATCTATGATACACTCCAAATAAAATATGGTGAAAACACATC  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTC-ATTATCTATGATACACTCCAAATAAAATATGGTGAAAACACATC  896

seq1  ATTATACAATTAACATTGGCAATGTGCTGTCATTTTTATCTGTACAAATG  950
      | ||||| ||||||| |||||||||||||||||||||||||||||  |||
seq2  A-TATAC-ATTAACA-TGGCAATGTGCTGTCATTTTTATCTGTAC--ATG  941

seq1  CAAGATGAAAAAATA-TCTCAAATAGAACTGTTTACACTAATATT  994
      | ||||||||||||| |||||||||| |||| ||||||| |||||
seq2  C-AGATGAAAAAATATTCTCAAATAG-ACTG-TTACACT-ATATT  982

seq1: chr10_109683892_109684908
seq2: B6Ng01-196D10.g_67_1098 (reverse)

seq1  AGGCTC-AGGGATCTATGC--TAAAGAAGTGAAAG-AAAGACTGTGAGAG  46
      | |||| ||||||||||||  |||||||||||||| ||||||||||||||
seq2  AAGCTCAAGGGATCTATGCCTTAAAGAAGTGAAAGAAAAGACTGTGAGAG  50

seq1  CTAGACATTGTGAATGACTCCACAGAACGTTGTGAATGACTCTTTCAGAA  96
      |||||||||||| |||||| ||||| ||||   |||||||||||||||||
seq2  CTAGACATTGTG-ATGACT-CACAG-ACGTGTGGAATGACTCTTTCAGAA  97

seq1  ACAACAGAACTGATATAC-ATATGAACTCACAAAGAACCACATCAGACCT  145
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AC-ACAGAACTGATATACAATATGAACTCACAAAGAACCACATCAGACCT  146

seq1  ACACAGGTTTAAACTAGACAAAAATATCAGCAATTAAAAG-AAGAAATAG  194
      ||||| |||| ||||||||||||||||||||||||||||| |||||||||
seq2  ACACAAGTTT-AACTAGACAAAAATATCAGCAATTAAAAGAAAGAAATAG  195

seq1  ATACAAAGCCCATCTCTGACCAAAAAGCTATTTGGAATTAATACCTGTTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGCCCATCTCTGACCAAAAAGCTATTTGGAATTAATACCTGTTC  245

seq1  AAAATGGAAAATCAGTTTTCTCCAATGGCATATCACTGTGCATATTAAGT  294
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAT-GAAAATCAGTTTTCT-CAATGGCATATCACTGTGCATATTAAGT  293

seq1  AT-ATTCAACATACTTGAT-ATCAGGGCAGGTCAC-ATACCTAGG-AGTA  340
      || |||||||||||||||| ||||||||||||||| ||||||||| ||||
seq2  ATAATTCAACATACTTGATAATCAGGGCAGGTCACAATACCTAGGAAGTA  343

seq1  GTTGGCTAATACATATGGCATCCATGATTATTAGGGTGGGGGTACTCTTT  390
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTTATACATATGGCATCCATGATTATTAGGGTGGGGGTACTCTTT  393

seq1  GTTTTGCTTTGCTCATTTTTGGGGGTCTTATTCTTCTTGCTTTTTGTTAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTTGCTCATTTTTGGGGGTCTTATTCTTCTTGCTTTTTGTTAT  443

seq1  CATTCTTTTCTTCCTTCTCTCTTTCTTTCTTTCTCTCAACAAA--GGGAA  488
      |||||||||||||||||||||||||||||||||||||||||||  || ||
seq2  CATTCTTTTCTTCCTTCTCTCTTTCTTTCTTTCTCTCAACAAAAGGGAAA  493

seq1  CAAG-AAGTTGAGTGGGTAGTG-AAGTATGTAGGATCTTGGA-GGAGGTT  535
      |||| ||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CAAGAAAGTTGAGTGGGTAGTGAAAGTATGTAGGATCTTGGAGGGAGGTT  543

seq1  G-AAAAGTAGG-AAGAATATGATCAGAATACATTGTAGGAAAAAA--TAA  581
      | ||||||||| |||||||||||||||||||||||||||||||||   ||
seq2  GAAAAAGTAGGAAAGAATATGATCAGAATACATTGTAGGAAAAAAATAAA  593

seq1  AAAAGTAGAAAAATACAAAAGTAACGA-TTTGCATAAGCAACAAG-AAGG  629
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  AAAAGTAGAAAAATACAAAAGTAACGATTTTGCATAAGCAACAAGAAAGG  643

seq1  AAATTTCAGAGTGTGACAAA-GGGGTACTGGTTAGTAATAAGGCAATTCC  678
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAATTTCAGAGTGTGACAAAGGGGGTACTGGTTAGTAATAAGGCAATTCC  693

seq1  AGATGCCAATAACTGTTTTACATAATCTAAATCCAAGTTTAGTGTTATAG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAATAACTGTTTTACATAATCTAAATCCAAGTTTAGTGTTATAG  743

seq1  CATCACGGTACACAAACTGCAACATTAACATGACCATTTAGTCGTGTCAA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACGGTACACAAACTGCAACATTAACATGACCATTTAGTCGTGTCAA  793

seq1  TTCAGGATTCTTTAAAACCCAATTTTCAAAATCATTCCAAGGAAAACTGT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATTCTTTAAAACCCAATTTTCAAAATCATTCCAAGGAAAACTGT  843

seq1  CTTGCTATCAAAGATACAAGTTAAAATTTAAAAAAGTGTTTGCTTTGTAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATCAAAGATACAAGTTAAAATTTAAAAAAGTGTTTGCTTTGTAA  893

seq1  CTGAAAACAATAGTCATTGTATTTTGGAATATTCAGGAAGAGATTTCTAG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACAATAGTCATTGTATTTTGGAATATTCAGGAAGAGATTTCTAG  943

seq1  TGTCCATCTTTTCTGTCTCTCCTTTCATTATAATGAACATACATTTTCAT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCTTTTCTGTCTCTCCTTTCATTATAATGAACATACATTTTCAT  993

seq1  AAGTTGAGTGATGGTTGGTAGCTAGTGAGATAAGAATTC  1017
      |||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGTGATGGTTGGTAGCTAGTGAGATAAGAATTC  1032