BAC Information

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BAC

Clone NameB6Ng01-196J22
Chromosome10 (Build37)
Map Location 45,858,753 - 46,037,868
singlet/doubletdoublet
Overlap genenone
Upstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
Downstream geneLOC100041632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196J22.bB6Ng01-196J22.g
ACCGA018714GA018715
length1,027944
definitionB6Ng01-196J22.b B6Ng01-196J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,858,753 - 45,859,781)(46,036,910 - 46,037,868)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggaggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagtgttaaaattttaagcaatc
ctactaaaatactatttaccccaaaatttctcatttattccttgagcagc
tttccttctgttttctaggatcacaattccaatcttgcattatatttctc
aataggtttactttcacttgagtctgactccatcatatttattacagtaa
caaatggagaatgttattattattgattttcctgtttcacattagaataa
accaataaacagtaaacagggaacagagataagaactgcacgtactcact
tccatcttttaccatctttacttcctgttcatctctaaaaataatgtctc
ccataaaagccaaagactgtcattaccttgatttctacactctcctttcc
tttgctcttttagtcctttctcttaatacttctctattctgtctttaaca
tcaatctctttcatctggcctgcctctcttacacagagtagtcagtaact
ctaatgaaaagtggtgtttaatattcactcaccatatatgggttccactc
ctcttacccatgaagtatatgtagtcatgtaatttgctttgatctatgac
tgagctagcagagttctgctgatgactgtaagctttgtcgatcagggtga
tcaagccttgctgctcttgcatctctg
gaattcctctgtaaaggacacttttccagaggaagaaaggacaaccaaaa
caaaaaagatatctttgggtatatttcctcaaaaagttatctggtggcct
tccagtttcaggatgtcaccttgaaataggcctttgagaatcctctgact
gctggctcaagtgtaacattgctttattttctttaggagatataaataga
gaagttataataaagttacacatagtttgtggtccctgttttgtacaata
cacaacactaatgatctgtatgtgtttcttattaatctccttacatagat
tagaattttatattcttactttacataacagtctaaaacactccctagtt
gattaagcattatatctttggccatttggtaaaaaaatgtgtgaactaag
tttcttatattattgaaaatatttaaatttaattatttaataatcttaat
attaagctaactgtatcataaaatgcccaaactgaaatctatagcaacaa
gaagacattcagcaaaaggtcatttttgtcccttttataagcagcattat
gacttaagaccctaaaaggaagattgattcatacttccagatatggtgac
ctgtgtcccattgaagatattagaccctcagaattaaagttgaaaagaat
tttaaacaaattaaaattaacaaattaaattaaacatattaaaattaaac
aaattaaagtactattagtatgatcacgcttgaataataatatatcacag
taatcacagattctactctccttgcttatttttatctagatttttagata
taaaccattgtagagtaatcacctttcaatatttcagtagtcattaaata
tgagcagcatgactcactatgctaatgccagtgtccagcaatagcacaaa
gcggacaccattctgtcggatgacttatgatgcatactcgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_45858753_45859781
seq2: B6Ng01-196J22.b_42_1068

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCA  250

seq1  GAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC  300

seq1  ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT  350

seq1  GTTCATAGCAGCCTTATTTATAATAGCCAGTGTTAAAATTTTAAGCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCAGCCTTATTTATAATAGCCAGTGTTAAAATTTTAAGCAATC  400

seq1  CTACTAAAATACTATTTACCCCAAAATTTCTCATTTATTCCTTGAGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAAATACTATTTACCCCAAAATTTCTCATTTATTCCTTGAGCAGC  450

seq1  TTTCCTTCTGTTTTCTAGGATCACAATTCCAATCTTGCATTATATTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTGTTTTCTAGGATCACAATTCCAATCTTGCATTATATTTCTC  500

seq1  AATAGGTTTACTTTCACTTGAGTCTGACTCCATCATATTTATTACAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTTACTTTCACTTGAGTCTGACTCCATCATATTTATTACAGTAA  550

seq1  CAAATGGAGAATGTTATTATTATTGATTTTCCTGTTTCACATTAGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAGAATGTTATTATTATTGATTTTCCTGTTTCACATTAGAATAA  600

seq1  ACCAATAAACAGTAAACAGGGAACAGAGATAAGAACTGCACGTACTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAAACAGTAAACAGGGAACAGAGATAAGAACTGCACGTACTCACT  650

seq1  TCCATCTTTTACCATCTTTACTTCCTGTTCATCTCTAAAAATAATGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTTACCATCTTTACTTCCTGTTCATCTCTAAAAATAATGTCTC  700

seq1  CCATAAAAGCCAAAGTCTGTCATTACCTTGATTTCTACACTCTCCTTTCC  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCATAAAAGCCAAAGACTGTCATTACCTTGATTTCTACACTCTCCTTTCC  750

seq1  TTTGCTCTTTTAGTCCTTTCTCTTAATACTTCTCTATTCTGTCTTTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTTTAGTCCTTTCTCTTAATACTTCTCTATTCTGTCTTTAACA  800

seq1  TCAATCTCTTTCATCTGGCCTGCCTCTCTTACACAGAGTAGTCAGTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTCTTTCATCTGGCCTGCCTCTCTTACACAGAGTAGTCAGTAACT  850

seq1  CTAATGAAAAAGTGGTGTTTAATATTCACTCACCATATAT-GGTTCCACT  899
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAATG-AAAAGTGGTGTTTAATATTCACTCACCATATATGGGTTCCACT  899

seq1  CCTCTTTCCCCTTGAAGTTATATTTAGCCATGTTATTTGCTTTGATCTAT  949
      |||| || ||| ||||| ||||| ||| ||||| ||||||||||||||||
seq2  CCTC-TTACCCATGAAG-TATATGTAGTCATGTAATTTGCTTTGATCTAT  947

seq1  -ACTGGGCAAGCAGAGGTTTTGCTGATGACTGTAAGCTTTGTGAATCAAG  998
       |||| || |||||| ||| ||||||||||||||||||||||  |||| |
seq2  GACTGAGCTAGCAGA-GTTCTGCTGATGACTGTAAGCTTTGTCGATCAGG  996

seq1  GTGATAAAGCCTTGGTGCTCTTGCATCTCTG  1029
      ||||| |||||||| ||||||||||||||||
seq2  GTGATCAAGCCTTGCTGCTCTTGCATCTCTG  1027

seq1: chr10_46036910_46037868
seq2: B6Ng01-196J22.g_63_1006 (reverse)

seq1  TCTTTGAGTATGCATTCAATAAGCCATCTGACAGAATGGTGTCTGGTTTT  50
      |||| ||||||||||   ||||| |||| ||||||||||||||  | |||
seq2  TCTTCGAGTATGCAT--CATAAGTCATCCGACAGAATGGTGTC-CGCTTT  47

seq1  GTGGCTATTTCTGGACACTGGCATTAGCATAGTGGTGTTCATTGCTGCTT  100
      || |||||| ||||||||||||||||||||||||    ||| |||||| |
seq2  GT-GCTATTGCTGGACACTGGCATTAGCATAGTG--AGTCA-TGCTGC-T  92

seq1  AATATTTAATTACTACTAAAATATTGAAAGGTTATAATTCTTACAATGTT  150
       ||||||||| |||||| |||||||||||||| || | || ||||||| |
seq2  CATATTTAATGACTACTGAAATATTGAAAGGTGATTACTC-TACAATGGT  141

seq1  TTATTATCTAAAAATCTAAATAAAAAATAAGCAAGTAGAGTAGAATCTGT  200
      ||| |||||||||||||| || ||||||||||||| ||||||||||||||
seq2  TTA-TATCTAAAAATCTAGAT-AAAAATAAGCAAGGAGAGTAGAATCTGT  189

seq1  GATTACTGTGATATATTATTATTAAAGTGTAATAATATTAATATTACTTT  250
      ||||||||||||||||||||||| ||| || || ||| ||||| ||| ||
seq2  GATTACTGTGATATATTATTATTCAAGCGTGATCATACTAATAGTAC-TT  238

seq1  TAATTTGTTTAATTTTAATATGTTTAATTTTAATTTGTTTAATTTTAATT  300
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TAATTTGTTTAATTTTAATATGTTTAA-TTTAATTTG-TTAATTTTAATT  286

seq1  TGTTTAAAATTCTTTTCAACTTTAATTCTGAGGGTCTAATATTCTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTTTAAAATTCTTTTCAACTTTAATTCTGAGGGTCTAATA-TCTTCAAT  335

seq1  GGGACACAGGTCACCATATCTGGAAGTATGAATCAATCTTCCTTTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACAGGTCACCATATCTGGAAGTATGAATCAATCTTCCTTTTAGGG  385

seq1  TCTTAAGTCATAATGCTGCTTATAAAAGGGACAAAAATGACCTTTTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTCATAATGCTGCTTATAAAAGGGACAAAAATGACCTTTTGCTG  435

seq1  AATGTCTTCTTGTTGCTATAGATTTCAGTTTGGGCATTTTATGATACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTCTTGTTGCTATAGATTTCAGTTTGGGCATTTTATGATACAGT  485

seq1  TAGCTTAATATTAAGATTATTAAATAATTAAATTTAAATATTTTCAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAATATTAAGATTATTAAATAATTAAATTTAAATATTTTCAATAA  535

seq1  TATAAGAAACTTAGTTCACACATTTTTTTACCAAATGGCCAAAGATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAACTTAGTTCACACATTTTTTTACCAAATGGCCAAAGATATAA  585

seq1  TGCTTAATCAACTAGGGAGTGTTTTAGACTGTTATGTAAAGTAAGAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATCAACTAGGGAGTGTTTTAGACTGTTATGTAAAGTAAGAATAT  635

seq1  AAAATTCTAATCTATGTAAGGAGATTAATAAGAAACACATACAGATCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTAATCTATGTAAGGAGATTAATAAGAAACACATACAGATCATT  685

seq1  AGTGTTGTGTATTGTACAAAACAGGGACCACAAACTATGTGTAACTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTGTATTGTACAAAACAGGGACCACAAACTATGTGTAACTTTAT  735

seq1  TATAACTTCTCTATTTATATCTCCTAAAGAAAATAAAGCAATGTTACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTCTCTATTTATATCTCCTAAAGAAAATAAAGCAATGTTACACT  785

seq1  TGAGCCAGCAGTCAGAGGATTCTCAAAGGCCTATTTCAAGGTGACATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGCAGTCAGAGGATTCTCAAAGGCCTATTTCAAGGTGACATCCT  835

seq1  GAAACTGGAAGGCCACCAGATAACTTTTTGAGGAAATATACCCAAAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGAAGGCCACCAGATAACTTTTTGAGGAAATATACCCAAAGATA  885

seq1  TCTTTTTTGTTTTGGTTGTCCTTTCTTCCTCTGGAAAAGTGTCCTTTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGTTTTGGTTGTCCTTTCTTCCTCTGGAAAAGTGTCCTTTACA  935

seq1  GAGGAATTC  959
      |||||||||
seq2  GAGGAATTC  944