BAC Information

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BAC

Clone NameB6Ng01-196M21
Chromosome10 (Build37)
Map Location 40,340,414 - 40,341,121
singlet/doubletsinglet
Overlap genenone
Upstream geneTraf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16
Downstream geneDdo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196M21.bB6Ng01-196M21.g
ACCGA018846GA018847
length1,097915
definitionB6Ng01-196M21.b B6Ng01-196M21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttggtccacttagacttgagctttgtacaaggagataagaatg
aatcgattcacattcttctacatgttaaccaccagttgtgccagcaccat
ttgttgaaaatgctgtcttttttccactggatggttttaactcctttgtt
aaagatcaagtgaccaaaggtgtgtgggttcatttctgcgtcttccattc
tcttccattaatctacctgtctgtcactatacacaattcctctgtagtac
agcttgaggtcagacatggtgattccaccagaggttcttttattgctgag
aatagtttttgctatccaaagttttttgttattccagataaatttgcaaa
ttgctctttctaactctgtgaagaattgagttggaattttgatggggatt
gcattgaatctttagattgctttcagcaagatagccatttttactatatt
aatcctgccaatccatgagcatgggagatctttccatcttctgagatctt
cttcaatttcattcttcagagacttgaagttcttatcatacagatctttc
actttcttggttagagtcacaccaaggtattttatattaattgtgactat
tgtaaagggtgttgtttccctaatttctttctcagcctgtttatccttcg
tgttgagaaaggccactgatttgtttgaattaattttatatccaactaat
tcactgaaattgtttatcaggtttaggagatgtctggtggaatttttggg
gtcacttatgtatactaacatatcatctgcaaatagtgatattttgactt
cttcctttccaatttatatccccttgatcttcttttgttgtctaattgct
ttggctaggacttcaagtcctatattgaataggtagggagagagtgggca
gccttgcctagtctctgattttaagtgggaatggcttcaaggtttctgtc
catttagtttgatgttggctactgctttgctgtatattgcttttatatgg
ttaggtatgggccttgaattcctaatctctcaggactttttatcatgtac
gggatgtttggactttgtccaatgcctttctcagaatcttaatgaga
gaattccccagacaaagtcagagaaagagaagccctgaatatcaagggag
tcctagactatatccttagttagttagttaacaatttacacattggaatt
tcatccatctgtaaaaacatgaaacttgcaggtaaaggaatgaagctgta
aataataatatttgggtatattcattcccagatgtaaatttctatgacaa
ttaaaaatgcccaggtactccttctggtctggtctggtgccctgagcaga
ccttgggcaagaattctgcagccagtcccacaacacctagaggaagaacc
cctcccaggtgctctaacatgcccaggatcaaaggatctgaggtgccctg
agcagactttgggcgctaaatttgcagccagtcccccaacacccagaaga
agctccactctcaggtgctctaacatgcccaggaccacaggatcccagga
tccaaggatcccaggaacttggtcacaccaggatctcagggtccagaggc
agcttgactccctagagctctgagacacccaggaattcaggatcacagga
ttccagaatcaaaggaatacagaaacagctgaactctgaggagttctgac
acaaccaggatcacaggaaggacagtcagatatagagaggacaggtagca
ctagtgataatcagatggcaggaggcaagcatgaacataagcaacagaaa
ccaaagttacttggcatcatcaaaacccaattctcccaccatagcaagtc
ctggatataccatcacacccaaaaagcaagattcggaactaaaatcactt
ctcaagattataatagaggactttaagaaggacataacacccttaaagaa
atataggaatcggccatcattggaaagagagtcccatcggtcttgcaaac
tttatatgcctcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40340414_40341121
seq2: B6Ng01-196M21.g_68_775

seq1  GAATTCCCCAGACAAAGTCAGAGAAAGAGAAGCCCTGAATATCAAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGACAAAGTCAGAGAAAGAGAAGCCCTGAATATCAAGGGAG  50

seq1  TCCTAGACTATATCCTTAGTTAGTTAGTTAACAATTTACACATTGGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGACTATATCCTTAGTTAGTTAGTTAACAATTTACACATTGGAATT  100

seq1  TCATCCATCTGTAAAAACATGAAACTTGCAGGTAAAGGAATGAAGCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCTGTAAAAACATGAAACTTGCAGGTAAAGGAATGAAGCTGTA  150

seq1  AATAATAATATTTGGGTATATTCATTCCCAGATGTAAATTTCTATGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATATTTGGGTATATTCATTCCCAGATGTAAATTTCTATGACAA  200

seq1  TTAAAAATGCCCAGGTACTCCTTCTGGTCTGGTCTGGTGCCCTGAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGCCCAGGTACTCCTTCTGGTCTGGTCTGGTGCCCTGAGCAGA  250

seq1  CCTTGGGCAAGAATTCTGCAGCCAGTCCCACAACACCTAGAGGAAGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCAAGAATTCTGCAGCCAGTCCCACAACACCTAGAGGAAGAACC  300

seq1  CCTCCCAGGTGCTCTAACATGCCCAGGATCAAAGGATCTGAGGTGCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGGTGCTCTAACATGCCCAGGATCAAAGGATCTGAGGTGCCCTG  350

seq1  AGCAGACTTTGGGCGCTAAATTTGCAGCCAGTCCCCCAACACCCAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTTTGGGCGCTAAATTTGCAGCCAGTCCCCCAACACCCAGAAGA  400

seq1  AGCTCCACTCTCAGGTGCTCTAACATGCCCAGGACCACAGGATCCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACTCTCAGGTGCTCTAACATGCCCAGGACCACAGGATCCCAGGA  450

seq1  TCCAAGGATCCCAGGAACTTGGTCACACCAGGATCTCAGGGTCCAGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGATCCCAGGAACTTGGTCACACCAGGATCTCAGGGTCCAGAGGC  500

seq1  AGCTTGACTCCCTAGAGCTCTGAGACACCCAGGAATTCAGGATCACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGACTCCCTAGAGCTCTGAGACACCCAGGAATTCAGGATCACAGGA  550

seq1  TTCCAGAATCAAAGGAATACAGAAACAGCTGAACTCTGAGGAGTTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAATCAAAGGAATACAGAAACAGCTGAACTCTGAGGAGTTCTGAC  600

seq1  ACAACCAGGATCACAGGAAGGACAGTCAGATATAGAGAGGACAGGTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGGATCACAGGAAGGACAGTCAGATATAGAGAGGACAGGTAGCA  650

seq1  CTAGTGATAATCAGATGGCAGGAGGCAAGCATGAACATAAGCAACAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGATAATCAGATGGCAGGAGGCAAGCATGAACATAAGCAACAGAAA  700

seq1  CCAAAGTT  708
      ||||||||
seq2  CCAAAGTT  708