BAC Information

Click to search

BAC

Clone NameB6Ng01-196P02
Chromosome10 (Build37)
Map Location 21,672,127 - 21,764,055
singlet/doubletdoublet
Overlap geneSgk, LOC667254
Upstream geneAhi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133
Downstream geneLOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196P02.bB6Ng01-196P02.g
ACCGA018946GA018947
length1,079966
definitionB6Ng01-196P02.b B6Ng01-196P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,762,960 - 21,764,055)(21,672,127 - 21,673,085)
sequence
gaattctataccaggtggttcctgttagaccttctgtgtttgcattcctc
tgttttatgtaagaatccagtaacctctttgtaccttgtgggtatgtcac
ccaacttccttattgtcttctctataaaaagtttgatgatcgatttgaca
agttacattcagattctacacaacctctcctgtgtgcatctgtctgtcat
tcatccgacgctttgcccacccatgactagagacccatttcacgcagaca
aaggggcccagagggtctgcggcatacgtgacagagggatccatgatcaa
gaggtatgtatacattgctccaaaacctgtggtgtcagtctggggtctgc
aatgcctcccttattttatgcttttaaaggggtgtgttctaggaagctct
accaccagaacataactgggccccacttcatgcccctaaatacttcttag
aggagaggcagcacctgaagttttgtcaggagtgagaagggaaatagact
cttctgctcctgccacttgaaaagaggaacttggagtctgagtgaagaac
tcagggatagaggcaatgatgagttcctagagttcaaggaaagcctttga
caggaggtttctaggtgatgggagtttgtacttgtgtttttacttgtctg
gcaggtgactgagtgctagaacctccaggtagcagctggaggggcctggt
cccacatagttcttctcagtgtttgattagaatgcctgaggttcatgcct
gttcctctttgtctgtgtgccttatactctgagccagtaatgttgcatac
atttcttctacctctcattgtgttctctttgtctctgtctctctctctcc
cattttctcacacttttttctccaacttgtatacagatctaagtctgtga
gtctgtgtgcatgcacaggtacagtctgtgatacgttttgtatgttttta
tttctctcacatttggatctagggtagtgtttgcctgaggaattactgct
aacagtttcagtgatgtgggtcctgaaggtctgtagtcccactttaaata
gcatggcactgacctatgtgtcacactgt
gaattccacacagatgagataagaagactagaaaggactcacatttttca
aggtgtccagccttttcattttggattaaaaaccaaccagacacctaagg
tcaggagaagtccataaccaacagaaattataaaaagagcagcattttaa
aatgaaggcagcatgctgttcctaggcagtttccgaaagtaattgatttc
gtgtttcttatctgcaggtcggtggtggttttggaaccttggtcagccag
tgaacacttttgcacatgtatttctttgaatcctttaccagctgagaggc
tgatgttttatcagagggaagtgtagtggttgcttttcatagcagcacaa
tacagtgctttcttttgggtgggacactctgtccagatttcctttgtacc
agatggctgcctcccaacacccaaagctcctgggatcactagggatccag
aatgtgctcacttctgtagctcaacagctagggaggaaggcagctccctc
ccctggcaggagtcagcctttagacttccataaccatgggtaggcacact
ttataatgtatttgaatcattgttcacttctgattttggatctgcaaaaa
taagccgccgtgtggggttttaaaatgtttaattttaagtagatgacttg
tggataaggcatggatgaacacctgtcagggaactcaatcctgagtccca
gggttcaaggctttctcccttttcttaattcgccaaacttgtccctagtt
caattatactgtttcccattttgacagtaattcatttttgttcgttagta
gtacaatgcactttgattttaggaaaaaaaaaaccaacttgtgaattcca
ctttcaatgtgcccaagattggaatttgtttattaaaggctgtctggctt
attcccacgtgtaccgataaaaacctaataattctgtgctagtatccaga
catcttccacgcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21762960_21764055
seq2: B6Ng01-196P02.b_42_1120 (reverse)

seq1  ACAGTTGTGACCACATA-GTCAAAGTGCAATGCTATTTAAAGTGGGGACT  49
      |||| ||||| |||||| |||  ||||| |||||||||||||| ||||||
seq2  ACAG-TGTGA-CACATAGGTC--AGTGCCATGCTATTTAAAGT-GGGACT  45

seq1  ACCAGACC-TCAGGACCCACATCACCTGGAAACTGTTAGGCAGGTAAATC  98
      | |||||| ||||||||||||||||   |||||||||| ||| |||| ||
seq2  A-CAGACCTTCAGGACCCACATCAC--TGAAACTGTTA-GCA-GTAATTC  90

seq1  CTCAGGCCAAAACACCTACCCCTAGATTCCAAATGGTGGAGAGAAATAAA  148
      |||||||  ||||| ||| ||||||| ||||||||   ||||||||||||
seq2  CTCAGGC--AAACA-CTA-CCCTAGA-TCCAAATG--TGAGAGAAATAAA  133

seq1  AACATACAAAACGTATTCACAGGACTGTACCTGTGCATGCACACAGACTC  198
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  AACATACAAAACGTA-TCACA-GACTGTACCTGTGCATGCACACAGACTC  181

seq1  ACAGACTTAGATCTGTATACAAGTTGGAGAAAAAAGTGTGAGAAAATGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTAGATCTGTATACAAGTTGGAGAAAAAAGTGTGAGAAAATGGG  231

seq1  AGAGAGAGAGACAGAGACAAAGAGAACACAATGAGAGGTAGAAGAAATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGACAGAGACAAAGAGAACACAATGAGAGGTAGAAGAAATGT  281

seq1  ATGCAACATTACTGGCTCAGAGTATAAGGCACACAGACAAAGAGGAACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACATTACTGGCTCAGAGTATAAGGCACACAGACAAAGAGGAACAG  331

seq1  GCATGAACCTCAGGCATTCTAATCAAACACTGAGAAGAACTATGTGGGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAACCTCAGGCATTCTAATCAAACACTGAGAAGAACTATGTGGGAC  381

seq1  CAGGCCCCTCCAGCTGCTACCTGGAGGTTCTAGCACTCAGTCACCTGCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCTCCAGCTGCTACCTGGAGGTTCTAGCACTCAGTCACCTGCCA  431

seq1  GACAAGTAAAAACACAAGTACAAACTCCCATCACCTAGAAACCTCCTGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTAAAAACACAAGTACAAACTCCCATCACCTAGAAACCTCCTGTC  481

seq1  AAAGGCTTTCCTTGAACTCTAGGAACTCATCATTGCCTCTATCCCTGAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTTCCTTGAACTCTAGGAACTCATCATTGCCTCTATCCCTGAGT  531

seq1  TCTTCACTCAGACTCCAAGTTCCTCTTTTCAAGTGGCAGGAGCAGAAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCAGACTCCAAGTTCCTCTTTTCAAGTGGCAGGAGCAGAAGAG  581

seq1  TCTATTTCCCTTCTCACTCCTGACAAAACTTCAGGTGCTGCCTCTCCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCCCTTCTCACTCCTGACAAAACTTCAGGTGCTGCCTCTCCTCT  631

seq1  AAGAAGTATTTAGGGGCATGAAGTGGGGCCCAGTTATGTTCTGGTGGTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTATTTAGGGGCATGAAGTGGGGCCCAGTTATGTTCTGGTGGTAG  681

seq1  AGCTTCCTAGAACACACCCCTTTAAAAGCATAAAATAAGGGAGGCATTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTAGAACACACCCCTTTAAAAGCATAAAATAAGGGAGGCATTGC  731

seq1  AGACCCCAGACTGACACCACAGGTTTTGGAGCAATGTATACATACCTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAGACTGACACCACAGGTTTTGGAGCAATGTATACATACCTCTT  781

seq1  GATCATGGATCCCTCTGTCACGTATGCCGCAGACCCTCTGGGCCCCTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGATCCCTCTGTCACGTATGCCGCAGACCCTCTGGGCCCCTTTG  831

seq1  TCTGCGTGAAATGGGTCTCTAGTCATGGGTGGGCAAAGCGTCGGATGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTGAAATGGGTCTCTAGTCATGGGTGGGCAAAGCGTCGGATGAAT  881

seq1  GACAGACAGATGCACACAGGAGAGGTTGTGTAGAATCTGAATGTAACTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGATGCACACAGGAGAGGTTGTGTAGAATCTGAATGTAACTTG  931

seq1  TCAAATCGATCATCAAACTTTTTATAGAGAAGACAATAAGGAAGTTGGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCGATCATCAAACTTTTTATAGAGAAGACAATAAGGAAGTTGGGT  981

seq1  GACATACCCACAAGGTACAAAGAGGTTACTGGATTCTTACATAAAACAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACCCACAAGGTACAAAGAGGTTACTGGATTCTTACATAAAACAGA  1031

seq1  GGAATGCAAACACAGAAGGTCTAACAGGAACCACCTGGTATAGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCAAACACAGAAGGTCTAACAGGAACCACCTGGTATAGAATTC  1079

seq1: chr10_21672127_21673085
seq2: B6Ng01-196P02.g_61_1026

seq1  GAATTCCACACAGATGAGATAAGAAGACTAGAAAGGACTCACATTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAGATGAGATAAGAAGACTAGAAAGGACTCACATTTTTCA  50

seq1  AGGTGTCCAGCCTTTTCATTTTGGATTAAAAACCAACCAGACACCTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCAGCCTTTTCATTTTGGATTAAAAACCAACCAGACACCTAAGG  100

seq1  TCAGGAGAAGTCCATAACCAACAGAAATTATAAAAAGAGCAGCATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAAGTCCATAACCAACAGAAATTATAAAAAGAGCAGCATTTTAA  150

seq1  AATGAAGGCAGCATGCTGTTCCTAGGCAGTTTCCGAAAGTAATTGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCAGCATGCTGTTCCTAGGCAGTTTCCGAAAGTAATTGATTTC  200

seq1  GTGTTTCTTATCTGCAGGTCGGTGGTGGTTTTGGAACCTTGGTCAGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTATCTGCAGGTCGGTGGTGGTTTTGGAACCTTGGTCAGCCAG  250

seq1  TGAACACTTTTGCACATGTATTTCTTTGAATCCTTTACCAGCTGAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTTTTGCACATGTATTTCTTTGAATCCTTTACCAGCTGAGAGGC  300

seq1  TGATGTTTTATCAGAGGGAAGTGTAGTGGTTGCTTTTCATAGCAGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTATCAGAGGGAAGTGTAGTGGTTGCTTTTCATAGCAGCACAA  350

seq1  TACAGTGCTTTCTTTTGGGTGGGACACTCTGTCCAGATTTCCTTTGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCTTTCTTTTGGGTGGGACACTCTGTCCAGATTTCCTTTGTACC  400

seq1  AGATGGCTGCCTCCCAACACCCAAAGCTCCTGGGATCACTAGGGATCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTGCCTCCCAACACCCAAAGCTCCTGGGATCACTAGGGATCCAG  450

seq1  -ATGTGCTCACTTCTGTAGCTCAACAGCTA-GGAGG-AGGCAGCTCCCTC  497
       ||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  AATGTGCTCACTTCTGTAGCTCAACAGCTAGGGAGGAAGGCAGCTCCCTC  500

seq1  CC--TGCA-GAGTCAGCCTTTAGACTT-CATAACCATGGGTAGGCACAC-  542
      ||   ||| |||||||||||||||||| ||||||||||||||||||||| 
seq2  CCCTGGCAGGAGTCAGCCTTTAGACTTCCATAACCATGGGTAGGCACACT  550

seq1  TTATAATGTATTTG-ATCATTGTTCACTTCTGATTTT-GATCTGC-AAAA  589
      |||||||||||||| |||||||||||||||||||||| ||||||| ||||
seq2  TTATAATGTATTTGAATCATTGTTCACTTCTGATTTTGGATCTGCAAAAA  600

seq1  TAAG-CGCCGTGTGGGGTTTTAAAATGTTTAAATTTTAAGTAGATGAC-T  637
      |||| ||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TAAGCCGCCGTGTGGGGTTTTAAAATGTTT-AATTTTAAGTAGATGACTT  649

seq1  GTGGATAAGGCATTGATGAACACCTGTCAGGG-ACTCAATCCTGAGTCCC  686
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  GTGGATAAGGCATGGATGAACACCTGTCAGGGAACTCAATCCTGAGTCCC  699

seq1  AGGGTTCAAGGC-TTCTCC--TTTCTTAATTCGCCAAACTTGTCCCTAGT  733
      |||||||||||| ||||||  |||||||||||||||||||||||||||||
seq2  AGGGTTCAAGGCTTTCTCCCTTTTCTTAATTCGCCAAACTTGTCCCTAGT  749

seq1  TCAATTATACTGTTTCC--ATTTGACAAGTTAATTCA-TTTTGTTCGTTA  780
      |||||||||||||||||   |||||||   ||||||| ||||||||||||
seq2  TCAATTATACTGTTTCCCATTTTGACA--GTAATTCATTTTTGTTCGTTA  797

seq1  GTAAGTACAATGCACTTTGATTTTAGGAAAAAAAAAAAAAAACAAACTGT  830
      || ||||||||||||||||||||||||    |||||||||| |||  |||
seq2  GT-AGTACAATGCACTTTGATTTTAGG----AAAAAAAAAACCAACTTGT  842

seq1  GAATT-CAC-TTCAATGTGCCCCAGATTGG-ATTTGTTTATTAAAGCTGG  877
      ||||| ||| |||||||||||| ||||||| |||||||||||||||   |
seq2  GAATTCCACTTTCAATGTGCCCAAGATTGGAATTTGTTTATTAAAGGCTG  892

seq1  TCTGCCTTATTTCCCACTTGTACCAATTAAAAATACTAATTATTTCTGTG  927
      |||| |||| ||||||| |||||| ||  ||||  |||| || |||||||
seq2  TCTGGCTTA-TTCCCACGTGTACCGAT--AAAAACCTAA-TAATTCTGTG  938

seq1  CTAGTATTCCAGGACCATCTTTCCACGCATGA  959
      |||||| |||||   |||| ||||||||||||
seq2  CTAGTA-TCCAG--ACATC-TTCCACGCATGA  966