BAC Information

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BAC

Clone NameB6Ng01-197C13
Chromosome10 (Build37)
Map Location 77,404,672 - 77,526,446
singlet/doubletdoublet
Overlap geneTrpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l
Upstream genePcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3
Downstream geneIcosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197C13.bB6Ng01-197C13.g
ACCGA019099GA019100
length1,1691,006
definitionB6Ng01-197C13.b B6Ng01-197C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,404,672 - 77,405,844)(77,525,439 - 77,526,446)
sequence
gaattctacatcttcatctgaaggctgctagtggaagagtgacttccagg
cagctaggatgagggccttaaagcccacacccacagtgacacacctattc
taacaaagtcacacttcctaatagtgccaatccctgggccaagcattata
taaaccatcacagcatccacatcaaacaaggccactcttgagtccttggc
aaatttaaaatgaggtgtctgtgcttccctaaattaccagtcagagagtt
cctgattttccattgttcagtcacagcccaagtcccttcataactccggt
gtggctagctccaggtgcccagtggcctatggttggtgggacctaaactc
aactcaactgaagcctagcactgctcacgctcaccccaagaagctcactt
agtaaacaaagctctgagagtgagcttgggagctctgagactcagcgtgc
cttgcaggggatattccaaatgtatagacacttgctacacactcggcatt
cgtttggtgcctctgcaggtctcgtgagggcaccacccctaaacccagct
tctggactggggagctggctacctctgaggtcactctttagtgctcttat
gaggagacaaggctggaccactcactgctgtgaccagtaaactcctctgc
tgtcagcataccaggtaagggccctcctgtgcttcctggcccttcccaag
taccacacccctctatctcaacaggctttgagtcccagaacagcactctc
aagctcgggtgtcccagaggggccctagcattctacgaatagtgttcaaa
acccagttctcctttggtatgctgtctgtcacatgcttcaaactctcagt
gcccaacccggttacctctcctcttctggggttcagagcccccatcatct
gcaaatccaatcatgcacccactctgaccaatcagatttcagaatcctga
tgtgtctgggagtcagcctggtagtgcgtatgagcctcacctttttggtc
cattccacatctggttttcggtgaagtctcaaacatcttctggagaatat
gctgagcttctgctggatcagagaatgtgatcctcagaggacaggcagag
tagctacctggagcgatgacgtcagcccactcggcgaacctcactatatt
cacgcagggtgttccattg
gaattcaaggtctaacggcaacgtcaccactgtgacatacagaagaaagg
tctcagtctcacacaccacaccagaacactaccagtaacaatcctatgat
atatttgaaaaacttcacaacaggtacacacagtttcagagaaacatggc
aggttatcccaccgggaacttgtgcagagccgtaggcacctcccaccccg
caaagtgagctgcacagaggcatcctggcaatcaaacaggagagaaaccc
gaaggcctgaaagcaaaccagagaaaactgtggagggaagagaccttagg
aagaaatctgccctggttctaggaaagactttcatcttatggtgattcat
ttctaaagaggaagtgagttttgagaaaaatacttgaagtactctctcag
cgggagaaggcagttcttcaccaggaggtcaactttcggggcgtccagct
tgctcctgcttctgacttgggcttgcagatactcttcttcctttggggtc
aggggcgcatgcttgctaccaaggaaagagtcacctgttagaaatgcagc
attggattgggtgctcgggagcgggggtgatggttggggggggcacagag
gcttgaggccctcacaaggtaaaggggatgcctgtggtctctggggaccc
tcaggaggacctaatggtgtctccacatcttaaaacagaagaataaatgg
ccctgcctcctacctgactctggatggattgggaacaggcaggcagagtt
tccaaagactaaaacctctaatatcgttccctacaccctttctctttcaa
gatgctgtctcactgtgtggctctggctggcctcgaaccactgagcaggc
ttttaaccactgcttctgctggggtaaaagcaacgcatgtgtgctagcgc
accccaggtgaagattttcatctttgatccagtccagcatgttccctttc
tggtgtgaagaggagagagcctagaagctgtcagaagggatgttgagcca
ttccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77404672_77405844
seq2: B6Ng01-197C13.b_46_1214

seq1  GAATTCTACATCTTCATCTGAAGGCTGCTAGTGGAAGAGTGACTTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTCATCTGAAGGCTGCTAGTGGAAGAGTGACTTCCAGG  50

seq1  CAGCTAGGATGAGGGCCTTAAAGCCCACACCCACAGTGACACACCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGATGAGGGCCTTAAAGCCCACACCCACAGTGACACACCTATTC  100

seq1  TAACAAAGTCACACTTCCTAATAGTGCCAATCCCTGGGCCAAGCATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTCACACTTCCTAATAGTGCCAATCCCTGGGCCAAGCATTATA  150

seq1  TAAACCATCACAGCATCCACATCAAACAAGGCCACTCTTGAGTCCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCACAGCATCCACATCAAACAAGGCCACTCTTGAGTCCTTGGC  200

seq1  AAATTTAAAATGAGGTGTCTGTGCTTCCCTAAATTACCAGTCAGAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAATGAGGTGTCTGTGCTTCCCTAAATTACCAGTCAGAGAGTT  250

seq1  CCTGATTTTCCATTGTTCAGTCACAGCCCAAGTCCCTTCATAACTCCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTTCCATTGTTCAGTCACAGCCCAAGTCCCTTCATAACTCCGGT  300

seq1  GTGGCTAGCTCCAGGTGCCCAGTGGCCTATGGTTGGTGGGACCTAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGCTCCAGGTGCCCAGTGGCCTATGGTTGGTGGGACCTAAACTC  350

seq1  AACTCAACTGAAGCCTAGCACTGCTCACGCTCACCCCAAGAAGCTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAACTGAAGCCTAGCACTGCTCACGCTCACCCCAAGAAGCTCACTT  400

seq1  AGTAAACAAAGCTCTGAGAGTGAGCTTGGGAGCTCTGAGACTCAGCGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACAAAGCTCTGAGAGTGAGCTTGGGAGCTCTGAGACTCAGCGTGC  450

seq1  CTTGCAGGGGATATTCCAAATGTATAGACACTTGCTACACACTCGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGGGATATTCCAAATGTATAGACACTTGCTACACACTCGGCATT  500

seq1  CGTTTGGTGCCTCTGCAGGTCTCGTGAGGGCACCACCCCTAAACCCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGTGCCTCTGCAGGTCTCGTGAGGGCACCACCCCTAAACCCAGCT  550

seq1  TCTGGACTGGGGAGCTGGCTACCTCTGAGGTCACTCTTTAGTGCTCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTGGGGAGCTGGCTACCTCTGAGGTCACTCTTTAGTGCTCTTAT  600

seq1  GAGGAGACAAGGCTGGACCACTCACTGCTGTGACCAGTAAACTCCTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACAAGGCTGGACCACTCACTGCTGTGACCAGTAAACTCCTCTGC  650

seq1  TGTCAGCATACCAGGTAAGGGCCCTCCTGTGCTTCCTGGCCCTTCCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCATACCAGGTAAGGGCCCTCCTGTGCTTCCTGGCCCTTCCCAAG  700

seq1  TACCACACCCCTCTATCTCAACAGGCTTTGAGTCCCAGAACAGCACTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCCCTCTATCTCAACAGGCTTTGAGTCCCAGAACAGCACTCTC  750

seq1  AAGCTCGGGTGTCCCAGAGGGGCCCTAGCATTCTACGAATAGTGTTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGGGTGTCCCAGAGGGGCCCTAGCATTCTACGAATAGTGTTCAAA  800

seq1  ACCCAGTTCTCCTTTGGTATGCTGTCTGTCACATGCTTCAAACTCTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTCTCCTTTGGTATGCTGTCTGTCACATGCTTCAAACTCTCAGT  850

seq1  GCCCAACCCGGTTACCTCTCCTCTTCTGGGGTTCAGAGCCCCCATCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACCCGGTTACCTCTCCTCTTCTGGGGTTCAGAGCCCCCATCATCT  900

seq1  GCAAATCCAATCATGCACCCACTCTGACCAATCAGATTTCAGGAATCCTG  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAAATCCAATCATGCACCCACTCTGACCAATCAGATTTCA-GAATCCTG  949

seq1  ATGTGTCTGGGAGTCAGCCTGGTAGGTGCGTATGAGCCTCACCTTTTTGG  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGTGTCTGGGAGTCAGCCTGGTA-GTGCGTATGAGCCTCACCTTTTTGG  998

seq1  TCCATTCCACAATCTGGTTTTCGGTGAAAGTCTCAAACATCTCCTGGAAG  1050
      |||||||||| ||||||||||||||| ||||||||||||||| |||| ||
seq2  TCCATTCCAC-ATCTGGTTTTCGGTG-AAGTCTCAAACATCTTCTGG-AG  1045

seq1  AATATGCTGAGCTTCTGCTGGATCAAGGAGATGGTGAT-CTCAGA-GACA  1098
      |||||||||||||||||||||||||  ||||  ||||| |||||| ||||
seq2  AATATGCTGAGCTTCTGCTGGATCA--GAGAATGTGATCCTCAGAGGACA  1093

seq1  GGCAGAGTAGCTACCT-GAGCGATGACGTCAG-CCACTCGGCCAGAGCCC  1146
      |||||||||||||||| ||||||||||||||| |||||||||  || || 
seq2  GGCAGAGTAGCTACCTGGAGCGATGACGTCAGCCCACTCGGC--GAACC-  1140

seq1  TCCACTA---TCACGCAGGGTGTGCCATTG  1173
        |||||   ||||||||||||| ||||||
seq2  -TCACTATATTCACGCAGGGTGTTCCATTG  1169

seq1: chr10_77525439_77526446
seq2: B6Ng01-197C13.g_64_1069 (reverse)

seq1  CTGGAATGGCTC-ACATCCCTTCCTGACAGCTTCTAGGCTCTCTCCTCTT  49
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  CTGGAATGGCTCAACATCCCTT-CTGACAGCTTCTAGGCTCTCTCCTCTT  49

seq1  CACACCAGAAAGGGAACATGCTGGACTGGATCAAAGATTGAAAATC-TCA  98
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  CACACCAGAAAGGGAACATGCTGGACTGGATCAAAGA-TGAAAATCTTCA  98

seq1  CCTGGGGTGCGCTAGCACACATGCGTTTGCTTTTAACCCCAGCAGAAGCA  148
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  CCTGGGGTGCGCTAGCACACATGCG-TTGCTTTT-ACCCCAGCAGAAGCA  146

seq1  GTGGTTAAAAGCCTGCTCAGTGGTTCGAGGCCAGCCAGAGCCACACAGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAAAGCCTGCTCAGTGGTTCGAGGCCAGCCAGAGCCACACAGTG  196

seq1  AGACAGCATCTTGAAAGAGAAAGGGTGTAGGGAACGATATTAGAGGTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATCTTGAAAGAGAAAGGGTGTAGGGAACGATATTAGAGGTTTT  246

seq1  AGTCTTTGGAAACTCTGCCTGCCTGTTCCCAATCCATCCAGAGTCAGGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGGAAACTCTGCCTGCCTGTTCCCAATCCATCCAGAGTCAGGTA  296

seq1  GGAGGCAGGGCCATTTATTCTTCTGTTTTAAGATGTGGAGACACCATTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGGCCATTTATTCTTCTGTTTTAAGATGTGGAGACACCATTAG  346

seq1  GTCCTCCTGAGGGTCCCCAGAGACCACAGGCATCCCCTTTACCTTGTGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTGAGGGTCCCCAGAGACCACAGGCATCCCCTTTACCTTGTGAG  396

seq1  GGCCTCAAGCCTCTGTGCCCCCCCCAACCATCACCCCCGCTCCCGAGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAGCCTCTGTGCCCCCCCCAACCATCACCCCCGCTCCCGAGCAC  446

seq1  CCAATCCAATGCTGCATTTCTAACAGGTGACTCTTTCCTTGGTAGCAAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCAATGCTGCATTTCTAACAGGTGACTCTTTCCTTGGTAGCAAGC  496

seq1  ATGCGCCCCTGACCCCAAAGGAAGAAGAGTATCTGCAAGCCCAAGTCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCCCTGACCCCAAAGGAAGAAGAGTATCTGCAAGCCCAAGTCAGA  546

seq1  AGCAGGAGCAAGCTGGACGCCCCGAAAGTTGACCTCCTGGTGAAGAACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGCAAGCTGGACGCCCCGAAAGTTGACCTCCTGGTGAAGAACTG  596

seq1  CCTTCTCCCGCTGAGAGAGTACTTCAAGTATTTTTCTCAAAACTCACTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCCGCTGAGAGAGTACTTCAAGTATTTTTCTCAAAACTCACTTC  646

seq1  CTCTTTAGAAATGAATCACCATAAGATGAAAGTCTTTCCTAGAACCAGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGAAATGAATCACCATAAGATGAAAGTCTTTCCTAGAACCAGGG  696

seq1  CAGATTTCTTCCTAAGGTCTCTTCCCTCCACAGTTTTCTCTGGTTTGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTTCCTAAGGTCTCTTCCCTCCACAGTTTTCTCTGGTTTGCTT  746

seq1  TCAGGCCTTCGGGTTTCTCTCCTGTTTGATTGCCAGGATGCCTCTGTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTTCGGGTTTCTCTCCTGTTTGATTGCCAGGATGCCTCTGTGCA  796

seq1  GCTCACTTTGCGGGGTGGGAGGTGCCTACGGCTCTGCACAAGTTCCCGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTTGCGGGGTGGGAGGTGCCTACGGCTCTGCACAAGTTCCCGGT  846

seq1  GGGATAACCTGCCATGTTTCTCTGAAACTGTGTGTACCTGTTGTGAAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAACCTGCCATGTTTCTCTGAAACTGTGTGTACCTGTTGTGAAGTT  896

seq1  TTTCAAATATATCATAGGATTGTTACTGGTAGTGTTCTGGTGTGGTGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATATATCATAGGATTGTTACTGGTAGTGTTCTGGTGTGGTGTGT  946

seq1  GAGACTGAGACCTTTCTTCTGTATGTCACAGTGGTGACGTTGCCGTTAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAGACCTTTCTTCTGTATGTCACAGTGGTGACGTTGCCGTTAGA  996

seq1  CCTTGAATTC  1008
      ||||||||||
seq2  CCTTGAATTC  1006