BAC Information

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BAC

Clone NameB6Ng01-197G12
Chromosome10 (Build37)
Map Location 77,404,672 - 77,526,446
singlet/doubletdoublet
Overlap geneTrpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l
Upstream genePcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3
Downstream geneIcosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197G12.bB6Ng01-197G12.g
ACCGA019279GA019280
length1,168977
definitionB6Ng01-197G12.b B6Ng01-197G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,404,672 - 77,405,839)(77,525,473 - 77,526,446)
sequence
gaattctacatcttcatctgaaggctgctagtggaagagtgacttccagg
cagctaggatgagggccttaaagcccacacccacagtgacacacctattc
taacaaagtcacacttcctaatagtgccaatccctgggccaagcattata
taaaccatcacagcatccacatcaaacaaggccactcttgagtccttggc
aaatttaaaatgaggtgtctgtgcttccctaaattaccagtcagagagtt
cctgattttccattgttcagtcacagcccaagtcccttcataactccggt
gtggctagctccaggtgcccagtggcctatggttggtgggacctaaactc
aactcaactgaagcctagcactgctcacgctcaccccaagaagctcactt
agtaaacaaagctctgagagtgagcttgggagctctgagactcagcgtgc
cttgcaggggatattccaaatgtatagacacttgctacacactcggcatt
cgtttggtgcctctgcaggtctcgtgagggcaccacccctaaacccagct
tctggactggggagctggctacctctgaggtcactctttagtgctcttat
gaggagacaaggctggaccactcactgctgtgaccagtaaactcctctgc
tgtcagcataccaggtaagggccctcctgtgcttcctggcccttcccaag
taccacacccctctatctcaacaggctttgagtcccagaacagcactctc
aagctcgggtgtcccagaggggccctagcattctacgaatagtgttcaaa
acccagttctcctttggtatgctgtctgtcacatgcttcaaactctcagt
gcccaacccggttacctctcctcttctggggttcagagcccccatcatct
gcaaatccaatcatgcacccactctgaccaatcagatttcaggaatcctg
atgtgtctgggagtcagcctggtagtgcgtatgagcctccacctttttgg
tccattccacaatcttggttttcgtgaaagtctcaaaacattctcctgga
agaatatgctgagcttctgctggatcagagaatggtgatctcagagacag
gcagagtagctacctgacgatgacgttcagcactcgccaggtccctccac
tatccacgcaaggtgtgc
gaattcaaggtctaacggcaacgtcaccactgtgacatacagaagaaagg
tctcagtctcacacaccacaccagaacactaccagtaacaatcctatgat
atatttgaaaaacttcacaacaggtacacacagtttcagagaaacatggc
aggttatcccaccgggaacttgtgcagagccgtaggcacctcccaccccg
caaagtgagctgcacagaggcatcctggcaatcaaacaggagagaaaccc
gaaggcctgaaagcaaaccagagaaaactgtggagggaagagaccttagg
aagaaatctgccctggttctaggaaagactttcatcttatggtgattcat
ttctaaagaggaagtgagttttgagaaaaatacttgaagtactctctcag
cgggagaaggcagttcttcaccaggaggtcaactttcggggcgtccagct
tgctcctgcttctgacttgggcttgcagatactcttcttcctttggggtc
aggggcgcatgcttgctaccaaggaaagagtcacctgttagaaatgcagc
attggattgggtgctcgggagcgggggtgatggttggggggggcacagag
gcttgaggccctcacaaggtaaaggggatgcctgtggtctctggggaccc
tcaggaggacctaatggtgtctccacatcttaaaacagaagaataaatgg
ccctgcctcctacctgactctggatggattgggaacaggcaggcagagtt
tccaaagactaaaacctctaatatcgttccctacaccctttctctttcaa
gatgctgtctcactgtgtggctctggctggcctcgaaccactgagcaggc
ttttaaccactgcttctgctgtggtttaaagcaacgcatgtgtgctagcg
caccccaggtgagattttcaatctttgattccagttccagcatgtttccc
tttctggtgtgaagaggagagagcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77404672_77405839
seq2: B6Ng01-197G12.b_47_1214

seq1  GAATTCTACATCTTCATCTGAAGGCTGCTAGTGGAAGAGTGACTTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTCATCTGAAGGCTGCTAGTGGAAGAGTGACTTCCAGG  50

seq1  CAGCTAGGATGAGGGCCTTAAAGCCCACACCCACAGTGACACACCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGATGAGGGCCTTAAAGCCCACACCCACAGTGACACACCTATTC  100

seq1  TAACAAAGTCACACTTCCTAATAGTGCCAATCCCTGGGCCAAGCATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTCACACTTCCTAATAGTGCCAATCCCTGGGCCAAGCATTATA  150

seq1  TAAACCATCACAGCATCCACATCAAACAAGGCCACTCTTGAGTCCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCACAGCATCCACATCAAACAAGGCCACTCTTGAGTCCTTGGC  200

seq1  AAATTTAAAATGAGGTGTCTGTGCTTCCCTAAATTACCAGTCAGAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAATGAGGTGTCTGTGCTTCCCTAAATTACCAGTCAGAGAGTT  250

seq1  CCTGATTTTCCATTGTTCAGTCACAGCCCAAGTCCCTTCATAACTCCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTTCCATTGTTCAGTCACAGCCCAAGTCCCTTCATAACTCCGGT  300

seq1  GTGGCTAGCTCCAGGTGCCCAGTGGCCTATGGTTGGTGGGACCTAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGCTCCAGGTGCCCAGTGGCCTATGGTTGGTGGGACCTAAACTC  350

seq1  AACTCAACTGAAGCCTAGCACTGCTCACGCTCACCCCAAGAAGCTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAACTGAAGCCTAGCACTGCTCACGCTCACCCCAAGAAGCTCACTT  400

seq1  AGTAAACAAAGCTCTGAGAGTGAGCTTGGGAGCTCTGAGACTCAGCGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACAAAGCTCTGAGAGTGAGCTTGGGAGCTCTGAGACTCAGCGTGC  450

seq1  CTTGCAGGGGATATTCCAAATGTATAGACACTTGCTACACACTCGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGGGATATTCCAAATGTATAGACACTTGCTACACACTCGGCATT  500

seq1  CGTTTGGTGCCTCTGCAGGTCTCGTGAGGGCACCACCCCTAAACCCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGTGCCTCTGCAGGTCTCGTGAGGGCACCACCCCTAAACCCAGCT  550

seq1  TCTGGACTGGGGAGCTGGCTACCTCTGAGGTCACTCTTTAGTGCTCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTGGGGAGCTGGCTACCTCTGAGGTCACTCTTTAGTGCTCTTAT  600

seq1  GAGGAGACAAGGCTGGACCACTCACTGCTGTGACCAGTAAACTCCTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACAAGGCTGGACCACTCACTGCTGTGACCAGTAAACTCCTCTGC  650

seq1  TGTCAGCATACCAGGTAAGGGCCCTCCTGTGCTTCCTGGCCCTTCCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCATACCAGGTAAGGGCCCTCCTGTGCTTCCTGGCCCTTCCCAAG  700

seq1  TACCACACCCCTCTATCTCAACAGGCTTTGAGTCCCAGAACAGCACTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCCCTCTATCTCAACAGGCTTTGAGTCCCAGAACAGCACTCTC  750

seq1  AAGCTCGGGTGTCCCAGAGGGGCCCTAGCATTCTACGAATAGTGTTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGGGTGTCCCAGAGGGGCCCTAGCATTCTACGAATAGTGTTCAAA  800

seq1  ACCCAGTTCTCCTTTGGTATGCTGTCTGTCACATGCTTCAAACTCTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTCTCCTTTGGTATGCTGTCTGTCACATGCTTCAAACTCTCAGT  850

seq1  GCCCAACCCGGTTACCTCTCCTCTTCTGGGGTTCAGAGCCCCCATCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACCCGGTTACCTCTCCTCTTCTGGGGTTCAGAGCCCCCATCATCT  900

seq1  GCAAATCCAATCATGCACCCACTCTGACCAATCAGATTTCAGGAATCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCAATCATGCACCCACTCTGACCAATCAGATTTCAGGAATCCTG  950

seq1  ATGTGTCTGGGAGTCAGCCTGGTAGGTGCGTATGAGCCT-CACCTTTTTG  999
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  ATGTGTCTGGGAGTCAGCCTGGTA-GTGCGTATGAGCCTCCACCTTTTTG  999

seq1  GTCCATTCCACAATC-TGGTTTTCGGTGAAAGTCTC-AAACA-TCTCCTG  1046
      ||||||||||||||| |||||||| ||||||||||| ||||| |||||||
seq2  GTCCATTCCACAATCTTGGTTTTC-GTGAAAGTCTCAAAACATTCTCCTG  1048

seq1  GAAGAATATGCTGAGCTTCTGCTGGATCAAGGAGATGGTGATCTCAGAGA  1096
      |||||||||||||||||||||||||||||  || ||||||||||||||||
seq2  GAAGAATATGCTGAGCTTCTGCTGGATCAGAGA-ATGGTGATCTCAGAGA  1097

seq1  CAGGCAGAGTAGCTACCTGAGCGATGACG-TCAGCCACTCGGCCAGAGCC  1145
      |||||||||||||||||||| |||||||| |||| ||||| |||||  ||
seq2  CAGGCAGAGTAGCTACCTGA-CGATGACGTTCAG-CACTC-GCCAGGTCC  1144

seq1  CTCCACTAT-CACGCAGGGTGTGC  1168
      ||||||||| |||||| |||||||
seq2  CTCCACTATCCACGCAAGGTGTGC  1168

seq1: chr10_77525473_77526446
seq2: B6Ng01-197G12.g_67_1042 (reverse)

seq1  AGGCTCTCTCCTCTTCACACCAGAAAGGG-AACATGCTGG-ACTGG-ATC  47
      ||||||||||||||||||||||||||||| |||||||||| ||||| |||
seq2  AGGCTCTCTCCTCTTCACACCAGAAAGGGAAACATGCTGGAACTGGAATC  50

seq1  AAAGATTGAAAATCTCACCTGGGGTGCGCTAGCACACATGCGTTTGCTTT  97
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAGATTGAAAATCTCACCTGGGGTGCGCTAGCACACATGCG-TTGCTTT  99

seq1  TAACCCCAGCAGAAGCAGTGGTTAAAAGCCTGCTCAGTGGTTCGAGGCCA  147
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAGCAGAAGCAGTGGTTAAAAGCCTGCTCAGTGGTTCGAGGCCA  149

seq1  GCCAGAGCCACACAGTGAGACAGCATCTTGAAAGAGAAAGGGTGTAGGGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCCACACAGTGAGACAGCATCTTGAAAGAGAAAGGGTGTAGGGA  199

seq1  ACGATATTAGAGGTTTTAGTCTTTGGAAACTCTGCCTGCCTGTTCCCAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATATTAGAGGTTTTAGTCTTTGGAAACTCTGCCTGCCTGTTCCCAAT  249

seq1  CCATCCAGAGTCAGGTAGGAGGCAGGGCCATTTATTCTTCTGTTTTAAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGAGTCAGGTAGGAGGCAGGGCCATTTATTCTTCTGTTTTAAGA  299

seq1  TGTGGAGACACCATTAGGTCCTCCTGAGGGTCCCCAGAGACCACAGGCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGACACCATTAGGTCCTCCTGAGGGTCCCCAGAGACCACAGGCAT  349

seq1  CCCCTTTACCTTGTGAGGGCCTCAAGCCTCTGTGCCCCCCCCAACCATCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTACCTTGTGAGGGCCTCAAGCCTCTGTGCCCCCCCCAACCATCA  399

seq1  CCCCCGCTCCCGAGCACCCAATCCAATGCTGCATTTCTAACAGGTGACTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCTCCCGAGCACCCAATCCAATGCTGCATTTCTAACAGGTGACTC  449

seq1  TTTCCTTGGTAGCAAGCATGCGCCCCTGACCCCAAAGGAAGAAGAGTATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGGTAGCAAGCATGCGCCCCTGACCCCAAAGGAAGAAGAGTATC  499

seq1  TGCAAGCCCAAGTCAGAAGCAGGAGCAAGCTGGACGCCCCGAAAGTTGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCCAAGTCAGAAGCAGGAGCAAGCTGGACGCCCCGAAAGTTGAC  549

seq1  CTCCTGGTGAAGAACTGCCTTCTCCCGCTGAGAGAGTACTTCAAGTATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTGAAGAACTGCCTTCTCCCGCTGAGAGAGTACTTCAAGTATTT  599

seq1  TTCTCAAAACTCACTTCCTCTTTAGAAATGAATCACCATAAGATGAAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAACTCACTTCCTCTTTAGAAATGAATCACCATAAGATGAAAGT  649

seq1  CTTTCCTAGAACCAGGGCAGATTTCTTCCTAAGGTCTCTTCCCTCCACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTAGAACCAGGGCAGATTTCTTCCTAAGGTCTCTTCCCTCCACAG  699

seq1  TTTTCTCTGGTTTGCTTTCAGGCCTTCGGGTTTCTCTCCTGTTTGATTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGGTTTGCTTTCAGGCCTTCGGGTTTCTCTCCTGTTTGATTGC  749

seq1  CAGGATGCCTCTGTGCAGCTCACTTTGCGGGGTGGGAGGTGCCTACGGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCCTCTGTGCAGCTCACTTTGCGGGGTGGGAGGTGCCTACGGCT  799

seq1  CTGCACAAGTTCCCGGTGGGATAACCTGCCATGTTTCTCTGAAACTGTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAGTTCCCGGTGGGATAACCTGCCATGTTTCTCTGAAACTGTGT  849

seq1  GTACCTGTTGTGAAGTTTTTCAAATATATCATAGGATTGTTACTGGTAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTTGTGAAGTTTTTCAAATATATCATAGGATTGTTACTGGTAGT  899

seq1  GTTCTGGTGTGGTGTGTGAGACTGAGACCTTTCTTCTGTATGTCACAGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTGTGGTGTGTGAGACTGAGACCTTTCTTCTGTATGTCACAGTG  949

seq1  GTGACGTTGCCGTTAGACCTTGAATTC  974
      |||||||||||||||||||||||||||
seq2  GTGACGTTGCCGTTAGACCTTGAATTC  976